BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25820.1 Length=1089 Score E Sequences producing significant alignments: (Bits) Value Ahg329091 jgi|Araly1|329091|fgenesh1_pm.C_scaffold_7001318 1155 0.0 > Ahg329091 jgi|Araly1|329091|fgenesh1_pm.C_scaffold_7001318 Length=870 Score = 1155 bits (625), Expect = 0.0 Identities = 787/864 (91%), Gaps = 16/864 (2%) Strand=Plus/Plus Query 53 ATGGCGTGTTTCGCAACCAAACAGCCTCTGTTGTTGTCTCTCCTCCTTGCCATTGGCTTC 112 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGCGTGTTTCGCAACCAAACAGCCTCTGTTGTTGTCTCTCCTCCTCGCCATTGGCTTC 60 Query 113 TTTGTGGTGGCTGCATCTGCCGGAAACTTCTATGAGAGCTTTGATATCACTTGGGGTAAT 172 ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||| Sbjct 61 TTTGTGGTGGCTGCATCCGCCGGAAGCTTCTACGAGAGCTTTGATATCACTTGGGGCAAT 120 Query 173 GGTCGTGCCAACATATTCGAGAATGGACAGCTTCTCACTTGTACTCTTGACAAGGTCTCC 232 |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 GGTCGTGCTAATATATTCGAGAATGGACAGCTTCTCACTTGTACTCTTGACAAGATCTCT 180 Query 233 GGCTCAGGTTTTCAATCCAAGAAGGAGTACTTGTTTGGTAAGATCGACATGAAGCTCAAG 292 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 GGCTCCGGTTTTCAATCCAAGAAGGAGTACTTGTTTGGTAAGATCGACATGAGGCTCAAG 240 Query 293 CTTGTCGCTGGAAACTCTGCTGGCACCGTCACCGCCTACTACCTATCGTCAAAAGGCA-C 351 |||||| |||||||| ||||| || |||||||| |||||||| || || ||||| | | Sbjct 241 CTTGTCAAGGGAAACTCCGCTGGTACTGTCACCGCATACTACCTTTCATCCAAAGG-AGC 299 Query 352 GGCATGGGATGAGATTGACTTCGAGTTTTTGGGAAATCGCACAGGACATCCTTACACTAT 411 | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 300 GACATGGGATGAGATTGACTTCGAGTTTTTGGGAAATCTCACAGGACAGCCTTACACTAT 359 Query 412 CCACACCAATGTGTTCACCGGAGGTAAAGGCGACCGTGAGATGCAGTTCCGTCTCTGGTT 471 |||||||||||| ||||| ||||||||||| ||||| ||||||||||||| ||||||||| Sbjct 360 CCACACCAATGTCTTCACTGGAGGTAAAGGTGACCGCGAGATGCAGTTCCATCTCTGGTT 419 Query 472 CGATCCCACTGCGGATTTCCACACCTACACCGTCCACTGGAACCCTGTTAACATCATCTT 531 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 420 CGATCCCACCGCGGATTTCCACACCTACACCGTCCACTGGAACCCTCTTAACATCATCTT 479 Query 532 CCTTGTGGATGGGATCCCAATTCGGGTGTTCAAGAACAACGAGAAAAATGGGGTGGCTTA 591 |||||||||||| || ||||||||||| ||||||||| |||||||| ||||||||||||| Sbjct 480 CCTTGTGGATGGTATTCCAATTCGGGTATTCAAGAACTACGAGAAATATGGGGTGGCTTA 539 Query 592 CCCTAAGAACCAGCCGATG-AGGATATACTCAAGCCTTTGGGAAGCCGATGACTGGGCTA 650 ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| | Sbjct 540 CCCTAAGAACCAGCCGATGCAA-ATATACTCAAGTCTTTGGGAAGCCGATGACTGGGCGA 598 Query 651 CAGAAGGCGGTCGCGTGAAGATCGACTGGAGCAACGCACCATTCAAG-GCCTCTTACAGA 709 || |||||||||| |||||||| |||||||||||||||||||||| | ||||| |||||| Sbjct 599 CACAAGGCGGTCGTGTGAAGATTGACTGGAGCAACGCACCATTCA-GCGCCTCCTACAGA 657 Query 710 AACTTCAACGACCAAAGCTCATGCAGCAGGACATC-AAGCTCAAAATGGGTGACTTGCGA 768 |||||||||||||||||||||||||||||||||| || || || ||||||||||||||| Sbjct 658 GACTTCAACGACCAAAGCTCATGCAGCAGGACATCGAACCT-AACATGGGTGACTTGCGA 716 Query 769 GCCAAACAGCAACTCGTGGATGTGGACGACTCTCAAT--CCTGCCCAGTACGGAAAAATG 826 ||||||| |||||| ||||||||||| |||||| | || ||| |||||||| | ||| Sbjct 717 CCCAAACAACAACTCATGGATGTGGACCTCTCTCAGTGACC-GCC-AGTACGGACAGATG 774 Query 827 ATGTGGGTGCAACGA-GACTT-CATGATCTACAACTATTGTACCGATTTTAAGAGATTCC 884 | |||||||||| || || || ||||||||||||||||||||| |||| |||||| |||| Sbjct 775 AAGTGGGTGCAA-GACGA-TTACATGATCTACAACTATTGTACTGATTATAAGAGGTTCC 832 Query 885 CTCAAGGCCTCCCCAAGGAGTGTA 908 |||| || ||||||||||| |||| Sbjct 833 CTCAGGGTCTCCCCAAGGAATGTA 856 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40562783688 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5