BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25820.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329091 jgi|Araly1|329091|fgenesh1_pm.C_scaffold_7001318 1155 0.0
> Ahg329091 jgi|Araly1|329091|fgenesh1_pm.C_scaffold_7001318
Length=870
Score = 1155 bits (625), Expect = 0.0
Identities = 787/864 (91%), Gaps = 16/864 (2%)
Strand=Plus/Plus
Query 53 ATGGCGTGTTTCGCAACCAAACAGCCTCTGTTGTTGTCTCTCCTCCTTGCCATTGGCTTC 112
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGTGTTTCGCAACCAAACAGCCTCTGTTGTTGTCTCTCCTCCTCGCCATTGGCTTC 60
Query 113 TTTGTGGTGGCTGCATCTGCCGGAAACTTCTATGAGAGCTTTGATATCACTTGGGGTAAT 172
||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| |||
Sbjct 61 TTTGTGGTGGCTGCATCCGCCGGAAGCTTCTACGAGAGCTTTGATATCACTTGGGGCAAT 120
Query 173 GGTCGTGCCAACATATTCGAGAATGGACAGCTTCTCACTTGTACTCTTGACAAGGTCTCC 232
|||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 GGTCGTGCTAATATATTCGAGAATGGACAGCTTCTCACTTGTACTCTTGACAAGATCTCT 180
Query 233 GGCTCAGGTTTTCAATCCAAGAAGGAGTACTTGTTTGGTAAGATCGACATGAAGCTCAAG 292
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GGCTCCGGTTTTCAATCCAAGAAGGAGTACTTGTTTGGTAAGATCGACATGAGGCTCAAG 240
Query 293 CTTGTCGCTGGAAACTCTGCTGGCACCGTCACCGCCTACTACCTATCGTCAAAAGGCA-C 351
|||||| |||||||| ||||| || |||||||| |||||||| || || ||||| | |
Sbjct 241 CTTGTCAAGGGAAACTCCGCTGGTACTGTCACCGCATACTACCTTTCATCCAAAGG-AGC 299
Query 352 GGCATGGGATGAGATTGACTTCGAGTTTTTGGGAAATCGCACAGGACATCCTTACACTAT 411
| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 300 GACATGGGATGAGATTGACTTCGAGTTTTTGGGAAATCTCACAGGACAGCCTTACACTAT 359
Query 412 CCACACCAATGTGTTCACCGGAGGTAAAGGCGACCGTGAGATGCAGTTCCGTCTCTGGTT 471
|||||||||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 360 CCACACCAATGTCTTCACTGGAGGTAAAGGTGACCGCGAGATGCAGTTCCATCTCTGGTT 419
Query 472 CGATCCCACTGCGGATTTCCACACCTACACCGTCCACTGGAACCCTGTTAACATCATCTT 531
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 CGATCCCACCGCGGATTTCCACACCTACACCGTCCACTGGAACCCTCTTAACATCATCTT 479
Query 532 CCTTGTGGATGGGATCCCAATTCGGGTGTTCAAGAACAACGAGAAAAATGGGGTGGCTTA 591
|||||||||||| || ||||||||||| ||||||||| |||||||| |||||||||||||
Sbjct 480 CCTTGTGGATGGTATTCCAATTCGGGTATTCAAGAACTACGAGAAATATGGGGTGGCTTA 539
Query 592 CCCTAAGAACCAGCCGATG-AGGATATACTCAAGCCTTTGGGAAGCCGATGACTGGGCTA 650
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
Sbjct 540 CCCTAAGAACCAGCCGATGCAA-ATATACTCAAGTCTTTGGGAAGCCGATGACTGGGCGA 598
Query 651 CAGAAGGCGGTCGCGTGAAGATCGACTGGAGCAACGCACCATTCAAG-GCCTCTTACAGA 709
|| |||||||||| |||||||| |||||||||||||||||||||| | ||||| ||||||
Sbjct 599 CACAAGGCGGTCGTGTGAAGATTGACTGGAGCAACGCACCATTCA-GCGCCTCCTACAGA 657
Query 710 AACTTCAACGACCAAAGCTCATGCAGCAGGACATC-AAGCTCAAAATGGGTGACTTGCGA 768
|||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct 658 GACTTCAACGACCAAAGCTCATGCAGCAGGACATCGAACCT-AACATGGGTGACTTGCGA 716
Query 769 GCCAAACAGCAACTCGTGGATGTGGACGACTCTCAAT--CCTGCCCAGTACGGAAAAATG 826
||||||| |||||| ||||||||||| |||||| | || ||| |||||||| | |||
Sbjct 717 CCCAAACAACAACTCATGGATGTGGACCTCTCTCAGTGACC-GCC-AGTACGGACAGATG 774
Query 827 ATGTGGGTGCAACGA-GACTT-CATGATCTACAACTATTGTACCGATTTTAAGAGATTCC 884
| |||||||||| || || || ||||||||||||||||||||| |||| |||||| ||||
Sbjct 775 AAGTGGGTGCAA-GACGA-TTACATGATCTACAACTATTGTACTGATTATAAGAGGTTCC 832
Query 885 CTCAAGGCCTCCCCAAGGAGTGTA 908
|||| || ||||||||||| ||||
Sbjct 833 CTCAGGGTCTCCCCAAGGAATGTA 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5