BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25830.1

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889572 jgi|Araly1|889572|Al_scaffold_0007_1558                    854    0.0  


> Ahg889572 jgi|Araly1|889572|Al_scaffold_0007_1558
Length=528

 Score =  854 bits (462),  Expect = 0.0
 Identities = 506/528 (96%), Gaps = 0/528 (0%)
 Strand=Plus/Plus

Query  199  ATGGTGAAACTGAGAGAAACAGAAGTGATCCTGAGACTCTGCATCGTCTTTTTTCTTCTC  258
            ||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||| |||||
Sbjct  1    ATGGTGAGACTGAGAGAAACAGAAGGGATCCTGAGGCTCTGTATCGTCTTTTTTATTCTC  60

Query  259  CTCACTTCTTGTTTGATCGGTTTGGATTCTCAGACCAAAGAGATTGCTTATATCCACAAG  318
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTCAGTTCTTGTTTGATCGGTTTGGATTCTCAGACCAAAGAGATTGCTTATATCCACAAG  120

Query  319  AACGTCAGTTTCAGATATTTGTTAGCTCTCGAGGCTGAGTTATACATAGATGTTGTGGTT  378
            || |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  121  AAAGTCAGTTTCAGATACTTGTTAGCTCTCGAGGCTGAGTTATACATAAATGTTGTGGTT  180

Query  379  GCTGCGTATAATTTGGTTCAACTAGGGCTTGGTTGGTACAATGTTGAACAAAAGACCTCC  438
            ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct  181  GCTGCGTATAATTTGGTTCAAATAGGGCTTGGTTGGTATAATGTTGAACAAAAGACCTCC  240

Query  439  AATCCCAAATGGTTCTCTTACCTCTTGGATCAGACGGCGGCATACGTGGTTTTCGCCGGG  498
            ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  241  AATCCCAAATGGTTCTCTTACCTCTTGGATCAGACAGCGGCGTACGTGGTTTTCGCGGGG  300

Query  499  ACATCAGCCGCGGCGCAACACTCATTGCTAGTGGTGACGGGTTCAAGGGAGCTTCAGTGG  558
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  301  ACATCAGCCGCGGCGCAACACTCATTGCTGGTGGTGACGGGTTCAAGGGAGCTTCAGTGG  360

Query  559  ATGAAATGGTGCTACAAGTTCACAAGGTTCTGTTTTCAGATGGGAAGTGCCATCATCTTA  618
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  ATGAAGTGGTGTTACAAGTTCACAAGGTTCTGTTTTCAGATGGGAAGTGCCATCATCTTA  420

Query  619  AACTACATTGCGGCAGCTCTCATGGTCCTCCTCTCTTCCATCTCCGCCTTCAACCTCTTC  678
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  AACTACATTGCGGTGGCTCTCATGGTCCTCCTCTCTTCCATCTCCGCCTTCAACCTCTTC  480

Query  679  CGTCTCTATTCCCCTAAACGtttttttCGCTTTAAGTCATCCTCCTAA  726
            || |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  481  CGCCTCTATTCCCCTAAACGTTTCTTTCGCTTTAAGTCCTCCTCCTAA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35644927395


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5