BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25840.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492235 jgi|Araly1|492235|fgenesh2_kg.7__1668__AT4G25840.1 1530 0.0
> Ahg492235 jgi|Araly1|492235|fgenesh2_kg.7__1668__AT4G25840.1
Length=1120
Score = 1530 bits (828), Expect = 0.0
Identities = 1059/1161 (91%), Gaps = 53/1161 (5%)
Strand=Plus/Plus
Query 1 GTCGTTAAAGTATGTTAACAACTCCGACAAGATTCGTTGCTC---TAAGAATCCCATTCC 57
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GTCGTCAAACTATGTTAACAACTCCGACAAGATTCGTTGCTCTAATAAGAATCCCATTCC 60
Query 58 GATCTTCCAATAAGATTCCGATCTCCATTGCTCCCTCTCCCAAAGTTTTTCCTCGGAAAC 117
||||||||| |||| |||||||||||||||||| || |||||||| || ||||| ||||
Sbjct 61 GATCTTCCATTAAGTTTCCGATCTCCATTGCTCACTTTCCCAAAGGTTATCCTCAGAAAA 120
Query 118 CAGTTATCAGAG-TTCCAGCAAGTCTCCGATTTGTAGCGACGATGTCGACCCCTGCCGCC 176
|||||||||||| || | ||| ||||| | | |||||||||||||||| ||||
Sbjct 121 CAGTTATCAGAGCTT-TATCAAATCTCC-A-----A---ACGATGTCGACCCCTGACGCC 170
Query 177 GCCGTCAACGCCACCGTCACAGTCACCGATGCCGGCAGAGGATCGATCACTCACGTCATA 236
||||||| ||||| | | |||||||| ||||| ||||||||||||||||||||||||
Sbjct 171 GCCGTCAGCGCCA----C-C-GTCACCGACGCCGGAAGAGGATCGATCACTCACGTCATA 224
Query 237 TTCGACATGGATGGTCTCCTTCTCGACACGGAGAAGTTTTACACGGAGGTCCAGGAAAAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TTCGACATGGATGGTCTCCTTCTCGACACGGAGAAGTTTTACACGGAGGTCCAGGAAAAG 284
Query 297 ATACTTGCTAGATACAATAAAACATTTGATTGGTCTTTGAAAGCAAAGATGATGGGGAGA 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 285 ATACTTGCTAGATACAATAAAACATTTGATTGGTCTTTGAAGGCAAAGATGATGGGGAGA 344
Query 357 AAAGCCATAGAAGCTGCAAGGCTTTTCGTTGACGAAAGTGGAATCAGTGACTCTCTTTCT 416
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 AAAGCGATCGAAGCTGCCAGGCTTTTCGTTGACGAAAGTGGAATCAGTGACTCTCTTTCT 404
Query 417 GCTGAAGATTTCATTGTAGAAAGAGAGTCAATGTTGCAAGACCTCTTCCCCACAAGTGAC 476
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GCTGAAGAGTTCATTGTAGAAAGAGAGTCAATGTTGCAAGACCTCTTCCCCACAAGTGAC 464
Query 477 CTAATGCCAGGAGCTAGCCGGCTTCTTAGACATCTCCATGGGAAAGGAATTCCAATATGT 536
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 465 CTTATGCCAGGAGCTAGCCGGCTTCTCAGACATCTCCATGGAAAAGGAATTCCAATTTGT 524
Query 537 ATAGCCACAGGTACACATACACGACATTTTGATCTTAAAACACAAAGACACCGTGAGCTT 596
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 525 ATAGCCACAGGTACACACACACGACATTTTGATCTTAAAACACAAAGACACCGTGAGCTG 584
Query 597 TTTTCGCTT-ATGCATCACGTAGTACGGGGGGATGACCCAGAGGTGAAGGAAGGGAAGCC 655
|||||| || |||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 585 TTTTCG-TTGATGCATCACGTAGTGCGGGGGGATGACCCAGAGGTAAAGCAAGGGAAGCC 643
Query 656 CGCGCCAGACGGCTTTCTTGCTGCATCCAGGAGATTTGAGGACGGTCCTGTAGATCCAC- 714
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 CGCTCCAGACGGCTTTCTTGCTGCATCCAGGAGATTTGAGGACGGTCCTGTAGATCCACA 703
Query 715 GCAAGGTTCTCGTGTTTGAAGATGCGCCTTCTGGAGTCCAGGCAGCTAAAAACGCCGGAA 774
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 704 G-AAGGTTCTCGTGTTTGAAGATGCGCCTTCTGGAGTCCAGGCAGCTAAAAATGCGGGAA 762
Query 775 TGAATGTAATAATGGTACCGGATTCAAGGTTAGATAAGTCCTACTGCAATGTTGCAGACC 834
||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||| ||||
Sbjct 763 TGAATGTGATAATGGTACCGGATCCAAGATTAGATAAGTCTTACTGCAATGTTGCGGACC 822
Query 835 AAGTTCTGGCCTCTCTGCTAGATTTCAAACCAGAGGAATGGGGCTTACCTTCCTTCCAGG 894
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AAGTTCTGGCCTCTTTGCTAGATTTCAAACCAGAGGAATGGGGCTTACCTTCCTTCCAGG 882
Query 895 ATTCACACAACTAAAACAACAAAG-CTTTCAGGGCAACGTTATCCTCAAGCTAACGATAC 953
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 883 ATTCACACAACTAAAACCACAAAATCTTTCAGGGCAACGTTATCCTCAAGCTAACGATAC 942
Query 954 TTGACTCGTT-A--ACTTTGATTCTTTAAGCCTCT-TACGCTATACGAGAAAGATTATTG 1009
|||||||||| | |||||| ||| | |||||| ||| ||||||||||||||| ||||
Sbjct 943 TTGACTCGTTGACGACTTTGGTTC---A-GCCTCTGTACCCTATACGAGAAAGATCATTG 998
Query 1010 CAAATTATAGATTCTTATTGGGGTAATTTAAAACAATATATTTATGTTCGTGATTTGTTT 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AAAATTATAGATTCTTATTGGGGTAATTTAAAACAATATATTTATGTTCGTGATTTGTT- 1057
Query 1070 TCTTGATTCATGAATTTGTAATTGTTATCCAGACCGTTAAGTGTGACTTTGGTGAGAATG 1129
| | | | || || | |||||||||||||||||||||||||||||||| |
Sbjct 1058 ----G-T--A--A-TT-GT--T----ATCCAGACCGTTAAGTGTGACTTTGGTGAGAAGG 1100
Query 1130 ATATTAGAAT-GATTGTTGTG 1149
|||| || | ||||||||||
Sbjct 1101 ATATGGGA-TCGATTGTTGTG 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5