BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25845.1

Length=734
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945497 jgi|Araly1|945497|scaffold_701726.1                        545    1e-154


> Ahg945497 jgi|Araly1|945497|scaffold_701726.1
Length=397

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 355/383 (93%), Gaps = 7/383 (2%)
 Strand=Plus/Plus

Query  175  TTCTAATTATGAAGAAGGATACATGCAAGGAAGGATCATCAATCTCGAGAAACTCATCGG  234
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  16   TTCTAATTATGAAGAAGGATATATGCAAGGAAGGATCATCAATCTCGAGAAACTCATCGG  75

Query  235  TGGGATACTATGATGAACGGATGCCAGAGGGTGTTCCGTTCGAGTGGGAGATGCAGCCAG  294
            |||||||||| ||||| |||| |||||||||| |||| ||| ||||||||||||||||||
Sbjct  76   TGGGATACTACGATGAGCGGAGGCCAGAGGGTATTCCTTTCAAGTGGGAGATGCAGCCAG  135

Query  295  GGACTCCCATTAATACTCAACCACGGGAGGTTGTTCCTCCATTAAGTCCTCCTCCAGCTA  354
            ||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||| |
Sbjct  136  GGACTCCCATTAATACTCACCCACAGGAGGATGTTCCTCCATTAAGTCCCCCTCCAGCGA  195

Query  355  TGCTCAGCCTCGGCCTCCCCAAGCCATCCATCTCCATCGAAGAGCCAAAGAACTTTGTGT  414
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  196  TGCTCAGCCTTGGCCTCCCCAAGCCATCCATCTCCATCGAAGAGCCAAAGAACTTTGTGT  255

Query  415  TTCCA---A--C-GAAGCTGAAGCTGCGGAATTGGAAACATCTTCATTGCAAGAGATATT  468
            |||||   |  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  256  TTCCAGCGAAGCTGAAGCTGAAGCTGCGGAATTGGAAACATCTTCATTGCAAGAGATATT  315

Query  469  TTTCTAGATTGACTAACAAAATGGTTTTGTCTTCAATTTGTTTGTACCCTGATAAACGCT  528
            ||||||||||||||||||||| |||||||||||| ||||||||||||| | | |||||||
Sbjct  316  TTTCTAGATTGACTAACAAAACGGTTTTGTCTTCGATTTGTTTGTACCATAACAAACGCT  375

Query  529  ACATGTGGAAAAAATGAATCAAA  551
            | ||||| ||||| ||||| |||
Sbjct  376  AAATGTGCAAAAA-TGAATAAAA  397



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27029148153


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5