BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25850.1
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329088 jgi|Araly1|329088|fgenesh1_pm.C_scaffold_7001315 1801 0.0
Ahg889567 jgi|Araly1|889567|Al_scaffold_0007_1553 1594 0.0
> Ahg329088 jgi|Araly1|329088|fgenesh1_pm.C_scaffold_7001315
Length=1188
Score = 1801 bits (975), Expect = 0.0
Identities = 1120/1191 (94%), Gaps = 6/1191 (1%)
Strand=Plus/Plus
Query 227 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCGTTGGAAGATGAAAAAGATTCTGAA 286
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCATTGGAAGATGAAAAAGATTCTGAG 60
Query 287 CACACTGCTTCGAATGTCATCCGCAAGATCCTCAGCCTCTTTAAGACCGTACGCCCAGGA 346
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 CACACAGCTTCGAATGTCATCCGCAAGATCCTCAGCCTCTTCAAGACCGTACGTCCAGGA 120
Query 347 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCCAA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCCAA 180
Query 407 TGTTACGGCGAGATGGTCTACAGCTTCGTCGGTCAGGATCTGCTTGGGGAATGCAGCCGC 466
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 181 TGTTACGGCGAGATGGTCTACAGCTTCGGCGGTCAGGATCTGCTTGGGGAATGCAACCGC 240
Query 467 CGTGATCTTCCCATTGAACGGCTCAAATCAGTGGTGACGTGGAACATCTCCACACTCCGT 526
||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||||
Sbjct 241 CGTGATCTTCCCATTGAACGGTTTAAATCGGTGGTGACGTGGAATATATCCACACTCCGT 300
Query 527 CCGGTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACTCACCACGTATCG 586
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 301 CCGCTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACACACCACGTCTCC 360
Query 587 AACGGTCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTTTCCGCTCTT 646
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 361 AACGGTCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTGTCCGCACTT 420
Query 647 CATGCGACTCACGAACAAGAAAATATCGACGTGACATGGTGTCAATATTTCACTCCTAAA 706
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 CATGCGACTCACGAACAAGAAAATATCGATGTGACATGGTGTCAATATTTCACTCCTAAA 480
Query 707 TTTCGTGGTACTCACGTGGACGTTGAGGTAAAGGGTAAAAGGGTAATGAAGCTTCTGAAT 766
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TTTCGTGGTACTTACGTGGACGTTGAGGTAAAGGGTAAAAGAGTAATGAAGCTTCTGAAT 540
Query 767 CATATAGAGACTTATGAGATGGACCAACCGAGACTAATAATGAGATTCTTACCGGCGCCG 826
| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 CGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATCATGAGATTCTTACCGGCGCCG 600
Query 827 GGAGCTTACTGGGCCGGAAAAGTGAAAATAAAGTGTCCGGAGACTGATCTCGAAGCTGAG 886
|||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 601 GGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTAATCTCGAAGCTGAG 660
Query 887 TTACATTTGATCTCCGATTCATTCATTGAAAGATTCAGAGGCAACAACAACAGATCAATA 946
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 661 TTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAACAACAGATCACTT 720
Query 947 AAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATTTTTGGCCATTGG 1006
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 721 AAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATGGCCATTGG 780
Query 1007 GACAGAACGGTAATGGCGAAAAATATAAAGACTGGTGAGCTCGAGGTCATTTACAATGCC 1066
||||||||||||||||| |||||| | |||||||||||| ||||||| || |||||||||
Sbjct 781 GACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGGTCGAGGTTATCTACAATGCC 840
Query 1067 AAGGAGAATATCACAGGACTCAAACCTCCAACAGTCAAGAACCTGGAGGAGGTAACGGAG 1126
|||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||
Sbjct 841 AAGGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAGGTAATGGAG 900
Query 1127 AGCGAGTCGACAATGGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAAAGATTGGGA 1185
|||||||| || ||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 901 AGCGAGTCAACGATGGTGTGGAGTGAAGTAAGTGA-GCGTATACTGAAGAAAGATTGGGA 959
Query 1186 AAGAGCAAGAGAAGCTAAGATAGTTGTGGAGGAGAAGCAGAGAGCGTCTTTAAAACAGAG 1245
|||||||||||||||||||||| ||||||||||||||||||||| | || | ||||||||
Sbjct 960 AAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCTGAAACAGAG 1019
Query 1246 AGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTTAGTGGTCAA-AGACGGTAAAG 1304
|||| ||||||||||||||||||||||||||||||||| ||||||||| | | |||||||
Sbjct 1020 AGAGACTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAATA-AGGGTAAAG 1078
Query 1305 ACTGGGATTGTTCACCGCTACAGCCTACGGTTCCTCCGGCGCCACTCGTCATCACATAGG 1364
||||||| || |||||||||||||| ||||||||||||| ||||||||| |||||| |||
Sbjct 1079 ACTGGGACTGCTCACCGCTACAGCCCACGGTTCCTCCGGGGCCACTCGTAATCACAGAGG 1138
Query 1365 AGCAAGGACGAA-TCATTCACCGGTTTCAAGATTCCAAAACTCTATGTTGA 1414
||||||| ||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 1139 CGCAAGGA-GAAATCATAAACCGGTTTCAAGATTCCAACACTCTATGTTGA 1188
> Ahg889567 jgi|Araly1|889567|Al_scaffold_0007_1553
Length=1143
Score = 1594 bits (863), Expect = 0.0
Identities = 1050/1140 (92%), Gaps = 14/1140 (1%)
Strand=Plus/Plus
Query 227 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCGT-TGGAAGATGAAAAAGATTCTGA 285
||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1 ATGAGAAGGCACCTTGTGCTGGCCAAACCTTTTTC-TCTGGAAGATGAGAAAGATTCTGA 59
Query 286 ACACACTGCTTCGAA-TGTCATCCGCAAGATCCTCAGCCTCTTTAAGACCGTACGCCCAG 344
| ||| ||||| || ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 60 GCTCACAGCTTC-AAGTGTCATCCGCAAGATCCTCAGTCTCATTAAGACCGTACGCCCAG 118
Query 345 GATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCC 404
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 119 GATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTCC 178
Query 405 AATGTTACGGCGAGATGGTCTACAGCTTCGTCGGTCAGGATCTGCTTGGGGAATGCAGCC 464
||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 179 AATGTTATGGCGAGATGATCTACAGCTTCGGCGGTCAGGATCTACTTGGGGAATGCAGCC 238
Query 465 GCCGTGA-TCTTCCCATTGAACGGCTCAAATCAGTGGTGACGTGGAACATCTCCACACTC 523
|||| || ||| || | |||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 GCCG-GAATCTGCCTGTCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACACTC 297
Query 524 CGTCCGGTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACTCACCACGTA 583
||||| || ||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 298 CGTCCCGTAGTCGTTGGCATGTCTCCGTATAACCCCGTTCTCGGCGAGACTCACCACGTC 357
Query 584 TCGAACGG-TCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTTTCCGC 642
|| ||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 358 TCCAACGGCT-ACATCAACGTCCTCACCGAACAAGTAGTGCATCATCCTCCGGTGTCCGC 416
Query 643 TCTTCATGCGACTCACGAACAAG-AAAATATCGACGTGACATGGTGTCAATATTTCACTC 701
|||||||| |||||||| ||| |||| || ||||||||||||||||||||||||||||
Sbjct 417 ACTTCATGCAACTCACGAG-AAGGAAAAGATTGACGTGACATGGTGTCAATATTTCACTC 475
Query 702 CTAAATTTCGTGGTAC-TCACGTGGACGTTGAGGTAAAGGGTAAAAGGGTAATGAAGCTT 760
|||||||||||||| | | ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 476 CTAAATTTCGTGGTGCGT-ACGTGGATGTTGAGGTAAATGGTAAAAGGGTAATGAAGCTT 534
Query 761 CTGAATCATATAGAGACTTATGAGATGGACCAACCGAGACTAATAATGAGATTCTTACCG 820
||| ||| || ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 CTGCATCGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAGATTCTTACCG 594
Query 821 GCGCCGGGAGCTTACTGGGCCGGAAAAGTGAAAATAAAGTGTCCGGAGACTGATCTCGAA 880
|||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 595 GCGCCGGGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTGATCTCGAA 654
Query 881 GCTGAGTTACATTTGATCTCCGATTCATTCATTGAAAGATTCAGAGGCAACAACAACAGA 940
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 655 GCTGAGTTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAATAACAGA 714
Query 941 TCAATAAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATTTTTGGC 1000
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 715 TCAATTAAAGGAAAGATATTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATGGC 774
Query 1001 CATTGGGACAGAACGGTAATGGCGAAAAATATAAAGACTGGTGAGCTCGAGGTCATTTAC 1060
||||||||||||||||||||||| |||||| | |||||||||||| ||||||| || |||
Sbjct 775 CATTGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGGTCGAGGTTATCTAC 834
Query 1061 AATGCCAAGGAGAATATCACAGGACTCAAACCTCCAACAGTCAAGAACCTGGAGGAGGTA 1120
||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||
Sbjct 835 AATGCCAAGGAGAATATCACAGGACTCAATCCTCCAACTGTCAAGAATCTGCAGGAGGTA 894
Query 1121 ACGGAGAGCGAGTCGACAATGGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAAAGA 1179
| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 895 ATGGAGAGCGAGTCGACGATGGTGTGGAGTGAAGTAAGTGA-GCGAATACTGAAGAAAGA 953
Query 1180 TTGGGAAAGAGCAAGAGAAGCTAAGATAGTTGTGGAGGAGAAGCAGAGAGCGTCTTTAAA 1239
|||||||||||||||||||||||||||| ||||||||||||||||||||| | || | ||
Sbjct 954 TTGGGAAAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCTGAA 1013
Query 1240 ACAGAGAGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTTAGTGGTCAAAGACGG 1299
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1014 ACAGAGAGAGACTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAAAAACGG 1073
Query 1300 TAAAGACTGGGATTGTTCACCGCTACAGCCTACGGTTCCTCCGGCGCCACTCGTCATCAC 1359
|||||||||||| || ||||||| |||||| |||||||||| ||| ||||||||||||||
Sbjct 1074 TAAAGACTGGGACTGCTCACCGCCACAGCCCACGGTTCCTCGGGCTCCACTCGTCATCAC 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5