BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25860.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889567 jgi|Araly1|889567|Al_scaffold_0007_1553 1834 0.0
Ahg329088 jgi|Araly1|329088|fgenesh1_pm.C_scaffold_7001315 1652 0.0
> Ahg889567 jgi|Araly1|889567|Al_scaffold_0007_1553
Length=1143
Score = 1834 bits (993), Expect = 0.0
Identities = 1098/1148 (96%), Gaps = 10/1148 (1%)
Strand=Plus/Plus
Query 50 ATGAGAAGGCAACTTGTGCTGGCCAAACCTTTTTCTCTGGAAGATGAGAAAGATTCTGAG 109
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAGGCACCTTGTGCTGGCCAAACCTTTTTCTCTGGAAGATGAGAAAGATTCTGAG 60
Query 110 CTCACAGCTTCAAGTGTCATCCGCAAGATCCTCAGTCTCATTAAGACCGTACGTCCAGGA 169
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCACAGCTTCAAGTGTCATCCGCAAGATCCTCAGTCTCATTAAGACCGTACGCCCAGGA 120
Query 170 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTCCAA 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTCCAA 180
Query 230 TGTTATGGGGAGATGATCTACAGCTTCGGCGGTCAGGATCTACT-GGGCGAATGCAGCCG 288
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 181 TGTTATGGCGAGATGATCTACAGCTTCGGCGGTCAGGATCTACTTGGG-GAATGCAGCCG 239
Query 289 CCGTAA-CATTCCCATCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACACTCC 347
||| || | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGGAATC-TGCCTGTCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACACTCC 298
Query 348 GTCCCGTGGTCGTTGGCATGTCTCCGTACAACCCCATTCTCGGCGAGACTCATCACGTCT 407
||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 299 GTCCCGTAGTCGTTGGCATGTCTCCGTATAACCCCGTTCTCGGCGAGACTCACCACGTCT 358
Query 408 CCAACGGCTACATCAACGTCCTCACCGAACAAGTAATGCATCATCCTCCGGTGTCCGCAC 467
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 CCAACGGCTACATCAACGTCCTCACCGAACAAGTAGTGCATCATCCTCCGGTGTCCGCAC 418
Query 468 TTCATGCGACTCACGAACAAG-AAAATATCGACGTCACATGGTGTCAATATTTCACTCCC 526
||||||| |||||||| ||| |||| || ||||| |||||||||||||||||||||||
Sbjct 419 TTCATGCAACTCACGAG-AAGGAAAAGATTGACGTGACATGGTGTCAATATTTCACTCCT 477
Query 527 AAATTTCGTGGTGCGTACGTGGATGTTGAGGTAAATGGTAAAAGGATAATGAAGCTTCTG 586
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 AAATTTCGTGGTGCGTACGTGGATGTTGAGGTAAATGGTAAAAGGGTAATGAAGCTTCTG 537
Query 587 CATCATAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAAATTCTTACCGGCG 646
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 CATCGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAGATTCTTACCGGCG 597
Query 647 CCGGGAGCTCATTGGGCCGGAAAAGTCAAGATAAAGTGTCCTGAGACTGATCTCGAAGCT 706
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 CCGGGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTGATCTCGAAGCT 657
Query 707 GAGTTACATTTGATCTCCGACTCATTCATTGAAAGATTCAGAGGCAACAACAACAGATCA 766
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 658 GAGTTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAATAACAGATCA 717
Query 767 ATCAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATCTTTGGCCAT 826
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 718 ATTAAAGGAAAGATATTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATGGCCAT 777
Query 827 TGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTG-GGCTCGAGGTTATCTACAA 885
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 778 TGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGG-TCGAGGTTATCTACAA 836
Query 886 TGCCAATGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAGGTAAT 945
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 TGCCAAGGAGAATATCACAGGACTCAATCCTCCAACTGTCAAGAATCTGCAGGAGGTAAT 896
Query 946 GGAGAGCGAGTCGACAATAGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAAAGATT 1004
||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||
Sbjct 897 GGAGAGCGAGTCGACGATGGTGTGGAGTGAAGTAAGTGA-GCGAATACTGAAGAAAGATT 955
Query 1005 GGGAAAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCTGAAAC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GGGAAAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCTGAAAC 1015
Query 1065 AGAGAGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTAGTCAAAGACGGTA 1124
|||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1016 AGAGAGAGACTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAAAAACGGTA 1075
Query 1125 AAGACTGGCACTGCTCACCGCTACAGCCCACGGTTCCTCGGGCTCCACTCGTCATCACAG 1184
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1076 AAGACTGGGACTGCTCACCGCCACAGCCCACGGTTCCTCGGGCTCCACTCGTCATCACGG 1135
Query 1185 AGAAATAA 1192
||||||||
Sbjct 1136 AGAAATAA 1143
> Ahg329088 jgi|Araly1|329088|fgenesh1_pm.C_scaffold_7001315
Length=1188
Score = 1652 bits (894), Expect = 0.0
Identities = 1068/1149 (93%), Gaps = 24/1149 (2%)
Strand=Plus/Plus
Query 50 ATGAGAAGGCAACTTGTGCTGGCCAAACCTTTTTC-TCTGGAAGATGAGAAAGATTCTGA 108
||||||| ||| ||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCAT-TGGAAGATGAAAAAGATTCTGA 59
Query 109 GCTCACAGCTTC-AAGTGTCATCCGCAAGATCCTCAGTCTCATT-AAGACCGTACGTCCA 166
|| ||||||||| || ||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 60 GCACACAGCTTCGAA-TGTCATCCGCAAGATCCTCAGCCTC-TTCAAGACCGTACGTCCA 117
Query 167 GGATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTC 226
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 118 GGATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTC 177
Query 227 CAATGTTATGGGGAGATGATCTACAGCTTCGGCGGTCAGGATCTAC-TGGGCGAATGCAG 285
|||||||| || |||||| ||||||||||||||||||||||||| | |||| |||||||
Sbjct 178 CAATGTTACGGCGAGATGGTCTACAGCTTCGGCGGTCAGGATCTGCTTGGG-GAATGCAA 236
Query 286 CCGCCGT-AACATTCCCATCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACAC 344
||||||| | | ||||||| |||||| | |||||||||||||||||||| || |||||||
Sbjct 237 CCGCCGTGATC-TTCCCATTGAACGGTTTAAATCGGTGGTGACGTGGAATATATCCACAC 295
Query 345 TCCGTCCCG-TGGTCGTTGGCATGTCTCCGTACAACCCCATTCTCGGCGAGACTCATCAC 403
||||| ||| ||||| |||||||||||||||||||| || ||||||||||||| || |||
Sbjct 296 TCCGT-CCGCTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACACACCAC 354
Query 404 GTCTCCAACGGCT-ACATCAACGTCCTCACCGAACAAGTAATGCATCATCCTCCGGTGTC 462
||||||||||| | ||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 355 GTCTCCAACGG-TCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTGTC 413
Query 463 CGCACTTCATGCGACTCACGAACAAGAAAATATCGACGTCACATGGTGTCAATATTTCAC 522
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 414 CGCACTTCATGCGACTCACGAACAAGAAAATATCGATGTGACATGGTGTCAATATTTCAC 473
Query 523 TCCCAAATTTCGTGGTGCGTACGTGGATGTTGAGGTAAATGGTAAAAGGA-TAATGAAGC 581
||| |||||||||||| | |||||||| ||||||||||| ||||||| || |||||||||
Sbjct 474 TCCTAAATTTCGTGGTACTTACGTGGACGTTGAGGTAAAGGGTAAAA-GAGTAATGAAGC 532
Query 582 TTCTGCATCATAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAAATTCTTAC 641
||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 533 TTCTGAATCGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATCATGAGATTCTTAC 592
Query 642 CGGCGCCGGGAGCTCATTGGGCCGGAAAAGTCAAGATAAAGTGTCCTGAGACTGATCTCG 701
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 593 CGGCGCCGGGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTAATCTCG 652
Query 702 AAGCTGAGTTACATTTGATCTCCGACTCATTCATTGAAAGATTCAGAGGCAACAACAACA 761
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 653 AAGCTGAGTTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAACAACA 712
Query 762 GATCAATCAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATCTTTG 821
||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 713 GATCACTTAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATG 772
Query 822 GCCATTGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTG-GGCTCGAGGTTATC 880
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 773 GCCATTGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGG-TCGAGGTTATC 831
Query 881 TACAATGCCAATGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAG 940
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TACAATGCCAAGGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAG 891
Query 941 GTAATGGAGAGCGAGTCGACAATAGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAA 999
||||||||||||||||| || || ||||||||||||||||||| || | |||||||||||
Sbjct 892 GTAATGGAGAGCGAGTCAACGATGGTGTGGAGTGAAGTAAGTG-AGCGTATACTGAAGAA 950
Query 1000 AGATTGGGAAAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCT 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AGATTGGGAAAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCT 1010
Query 1060 GAAACAGAGAGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTAGTCAA-AG 1118
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1011 GAAACAGAGAGAGACTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAATA- 1069
Query 1119 ACGGTAAAGACTGGCACTGCTCACCGCTACAGCCCACGGTTCCTC-GGGCTCCACTCGTC 1177
| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1070 AGGGTAAAGACTGGGACTGCTCACCGCTACAGCCCACGGTTCCTCCGGGG-CCACTCGTA 1128
Query 1178 ATCACAGAG 1186
|||||||||
Sbjct 1129 ATCACAGAG 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5