BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25870.1
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492232 jgi|Araly1|492232|fgenesh2_kg.7__1665__AT4G25870.1 2366 0.0
Ahg495825 jgi|Araly1|495825|fgenesh2_kg.8__1641__AT5G57270.1 856 0.0
> Ahg492232 jgi|Araly1|492232|fgenesh2_kg.7__1665__AT4G25870.1
Length=1492
Score = 2366 bits (1281), Expect = 0.0
Identities = 1431/1501 (95%), Gaps = 19/1501 (1%)
Strand=Plus/Plus
Query 19 AGGAGGATCAAATTATACTTTTTTGAGATCTGGGTTCGGACAAAGATTCTGTCTTTCTGC 78
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGAGGATCAAATTCGACCTTTTTGAGATCTGGGTTCGGACAAAGATTCTGTCTTTCTGC 60
Query 79 ATTCTCTACCGTTTCGATTCAGCTCGAGGCAATGCCAATCTAAAAGGAG----T----AG 130
| | ||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 61 A-T-TCTACCGTTTCGATTCAGCTCCAGGCAATGCCAATCTAAAAGGAGTATATGCAGAG 118
Query 131 GTGAAAAAAGATTCAATTTTTGTATGCCTATCAATTAGAAAGGAGAAGAGGGGAGGTGGT 190
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||
Sbjct 119 GTGAAAAAAGATTCAATTTTTGTATGCCTATCAATTAGAAAGGAG-A-A-GGGAGGT-GT 174
Query 191 TAGATTGGTTTCAATGGGTGAGACGCAGAAGATTTTGCAAGGGCCACGTCACCACACATC 250
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 175 TAGATTGGTTTCAATGGGTGAGACGAAGAAGATTTTGCAAGGGCCACGTCACCACACATC 234
Query 251 TCTGAAGAAGCCCTTATGGGTTGTTTTGACAGTCTCAGTGACCAGCATGCTTCTAATCTG 310
||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||
Sbjct 235 TCTGAAGAAGCCCTTATGGCTTGTTTTGACAGTTTCAGTGACTAGCATGCTTCTCATCTG 294
Query 311 TACTCACATGTATCCAAAACATGGCAAGAGCTCCTCGTGTCACGGCCTCT-ATAGCACCA 369
||||||||||||||||| ||| |||||||||||||||||||| ||||| | ||||||||
Sbjct 295 TACTCACATGTATCCAAGACAGGGCAAGAGCTCCTCGTGTCATGGCCT-TGGTAGCACCA 353
Query 370 GAGGCTGTGAGGATGCTCTCTCTAAGTGGCTACCTGTTCATGTCAGGAAATTCACTGATG 429
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GAGGCTGCGAGGATGCTCTCTCTAAGTGGCTACCTGTTCATGTCAGGAAATTCACTGATG 413
Query 430 AGGAGATAGCAGCTCGAGCAGTGGTTAGAGACATACTAAGAACGCCTCCCTTCATAACC- 488
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 414 AGGAGATAGCAGCTCGAGCAGTGGCCAGAGACATACTAAGAACGCCTCCCTTCATAACCG 473
Query 489 AATAACTCCAAAATCGCTTTCTTGTTCTTGACTCCCGGTACTTTGCCATTTGAGAAGCTC 548
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 474 AA-AACTCCAAAATCGCTTTCTTGTTCTTGACTCCTGGTACTTTGCCATTCGAGAAGCTA 532
Query 549 TGGGATGAATTTTTCAAGGGTCATGAAGGGAAATTCTCGATATATATCCACCCGTCAAAG 608
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 533 TGGGATGAATTTTTCAAGGGTCATGAAGGGAAGTTCTCGATTTATATCCACCCGTCAAAG 592
Query 609 GAACGACCAGTTCACATCAGCCGTCACTTTTCTGATCGAGAGATTCACAGTGATGAGGTT 668
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 593 GAACGACCAGTTCACATCAGCCGTCACTTTTCTGATCGTGAGATCCACAGTGATGAGGTC 652
Query 669 ACTTGGGGAAGGATTTCTATGGTTGATGCTGAGAAGCGGTTACTGGTTAGCGCTCTTGAA 728
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 653 ACTTGGGGAAGGATTTCTATGGTTGATGCCGAGAAGCGGTTACTGGTTAGCGCTCTTGAA 712
Query 729 GATCCTGACAACCAACACTTTGTTCTTGTTTCAGAGAGTTGTATTCCGTTGCATACTTTT 788
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 713 GATCCTGACAACCAACACTTTGTTCTTCTTTCAGAGAGTTGTATTCCATTGCATACTTTT 772
Query 789 GACTACACTTATAGATATTTGTTGTACTCCAACGTTAGCTTCATTGAGAGTTTTGTGGAT 848
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 773 GACTACACTTATAGATATTTGCTGTACTCCAGTGTTAGCTTCATTGAGAGTTTTGTAGAT 832
Query 849 CCGGGTCCACATGGAACCGGTAGACATATGGAACACATGTTACCAGAAATCGCCAAGGAA 908
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 833 CCTGGTCCACATGGGACCGGTAGACATATGGAACACATGCTACCAGAAATCGCCAGGGAA 892
Query 909 GATTTTAGAAAGGGTGCTCAGTGGTTCACAATGAAGCGACAACACGCGATTATAGTGATG 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GATTTTAGAAAGGGTGCTCAGTGGTTCACAATGAAGCGACAACACGCGATTATAGTGATG 952
Query 969 GCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGACCTGGAATAGAGGCCGAC 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGACCTGGAATAGAGGCCGAC 1012
Query 1029 AAGAACTGCATTGCCGATGAACATTACTTGCCAACATTCTTCAATATGATTGATCCCATG 1088
|||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1013 AAGAACTGCATTTCTGATGAACATTACTTGCCAACATTTTTCAATATGATTGATCCCATG 1072
Query 1089 GGGATCTCAAATTGGTCAGTGACGTTTGTTGATTGGTCTGAACGAAGGTGGCATCCAAAG 1148
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1073 GGGATCTCAAACTGGTCAGTGACGTATGTTGATTGGTCTGAACGAAGGTGGCATCCAAAG 1132
Query 1149 ACATACGGAGGAAACGAGATTTCATTAGAATTTATGAAAAATGTCACATCCGAGGACATG 1208
|||||||||||||| ||||||||| |||| || |||||||||||||| ||||||||||||
Sbjct 1133 ACATACGGAGGAAATGAGATTTCACTAGAGTTCATGAAAAATGTCACGTCCGAGGACATG 1192
Query 1209 AGTGTACATGTCACCAGTGTGGGGAAGCATGGAGATGAGCTGCATTGGCCTTGTACATGG 1268
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1193 AGTGTACACGTCACCAGTGTGGGCAAGCATGGAGATGAGCTGCATTGGCCTTGTACATGG 1252
Query 1269 AACGGGATTAAACGGCCTTGCTATCTATTTGCAAGAAAGTTCCATCCTGATACTCTCGAC 1328
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AACGGGATTACACGGCCTTGTTATCTATTTGCAAGAAAGTTCCATCCTGATACTCTCGAC 1312
Query 1329 ACATTGGTCAACCTCTTCCCAAACTACACAAACACAGCTGTCTGAGAGAGGATTCTTGAA 1388
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1313 ACATTGGTCAACCTCTTCCCAAACTACACAAGCACAGCTGTCTGAGAGAGGATTCTTGAA 1372
Query 1389 CCAAACACACACATTCTTGGACCTAATTGTGTTCCAAATATGTCTCAGAGATGGATATTT 1448
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CCAAA-ACACACATTCTTGGACCTAATTGTGTTCCAAATATGTCTCAGAGATGGATATTT 1431
Query 1449 TAGATACTGTAAATTTTCTGAAGAAACTGAAATTATTCTTGGATTTTGATGTTTCTTGAT 1508
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1432 TAGATACTGTAAATTTTCTGAAGAAACTGAAATTATTCTTGGAATTTGATGTTTCTTGAT 1491
Query 1509 G 1509
|
Sbjct 1492 G 1492
> Ahg495825 jgi|Araly1|495825|fgenesh2_kg.8__1641__AT5G57270.1
Length=1781
Score = 856 bits (463), Expect = 0.0
Identities = 855/1039 (82%), Gaps = 48/1039 (5%)
Strand=Plus/Plus
Query 396 TGGCTACCTGTTCATGTCAGGAAATTCACTGATG-AGGAGATAGCAGCTCGAGCAGTGGT 454
||||| ||||||||||| |||||||| || |||| || || |||||||||||| ||| |
Sbjct 516 TGGCTTCCTGTTCATGTGAGGAAATTTACGGATGAAGAAG-TAGCAGCTCGAGTTGTGAT 574
Query 455 TAGAGACATACTAAGAAC-GCCTCCCT--TCATAACCAATAACTCCAAAATCGCTTTCT- 510
| ||| || || || || ||| ||| || ||||| ||| || ||||||||||| |
Sbjct 575 CAAAGATATTCTGAG-ACTACCT-CCTGCTC-TAACCGCTAAATCGAAAATCGCTTT-TA 630
Query 511 TGTTCTTGACTCCCGGTACTTTGCCATTTGAGAAGCTCTGGGATGAA-TTTTTCAAGGGT 569
||||||||||||| ||||||||||||||||||||||| |||||| || |||||| |||||
Sbjct 631 TGTTCTTGACTCCTGGTACTTTGCCATTTGAGAAGCTTTGGGAT-AAGTTTTTCCAGGGT 689
Query 570 CATGAAGGGAA-ATTCTCGATATATATCCACCCGTCAAAGG-AACGACCAGTTCACATCA 627
|| ||| |||| |||||| || || |||||||| || |||| ||||||||||||||| |
Sbjct 690 CAAGAA-GGAAGATTCTCTATTTACATCCACCCATC-AAGGTTACGACCAGTTCACATTA 747
Query 628 GCCGTCACTTTTCTGATCGAGAGATTCACAGTGATGAGGTTACTTGGGGAAGGATTTCTA 687
||||||||||||| || || ||||||||||| ||| | || |||||||||||||||||||
Sbjct 748 GCCGTCACTTTTCAGACCGTGAGATTCACAGCGATCATGTCACTTGGGGAAGGATTTCTA 807
Query 688 TGGTTGATGCTGAGAAGCGG-TTACTGGTTAGCGCTCTTGAAGATCCTGACAACCAACAC 746
|||||||||| ||||| ||| || || | | ||||||||||||||||||||||||||||
Sbjct 808 TGGTTGATGCCGAGAAACGGCTT-CTAGCAAACGCTCTTGAAGATCCTGACAACCAACAC 866
Query 747 TTTGTTCTTGTTTCAGAGAGTTGTATTCCGTTGCATACTTTTGACTACACTTATAGATAT 806
||||||||| ||||||| |||||||| ||||||||||| |||||||| || ||| |||||
Sbjct 867 TTTGTTCTTCTTTCAGAAAGTTGTATACCGTTGCATACATTTGACTATACCTATCGATAT 926
Query 807 TTGTTGTACTCCAACGTTAGCTTCATTGAGAGTTTTGTGGATCCGGGTCCACATGGAACC 866
||| || || | || || ||||||||||| ||||||| ||||| ||||| || || ||
Sbjct 927 TTGATGCACGCAAATGTCAGCTTCATTGATAGTTTTGAGGATCTTGGTCCTCACGGGACT 986
Query 867 GGTAGACATATGGAACACATGTTACCAGAAATCGCCAAGG-AAGATTTTAGAAAGGGTGC 925
|| ||||| ||||| ||||||||||| || ||| |||||| ||||||| |||||||||||
Sbjct 987 GGCAGACACATGGATCACATGTTACCTGAGATC-CCAAGGCAAGATTTCAGAAAGGGTGC 1045
Query 926 TCAGTGGTTCACAATGAAGCGACAACACGC-GATTATAGTGATGGCCGATGGTCTTTACT 984
|||||||||||||||||||| || ||||| | | ||||||||||| |||||||| ||||
Sbjct 1046 ACAGTGGTTCACAATGAAGCGTCAGCACGCTG-TAATAGTGATGGCTGATGGTCTCTACT 1104
Query 985 ACTCAAAATTCCGCGAGTATTGTGGACCTGGAATAGAGGCCGACAAGAACTGCATTGCCG 1044
|||| |||||||| |||||||| |||| || |||| || ||||||||||||| || |
Sbjct 1105 ACTCGAAATTCCGGGAGTATTGCAGACCCGGGGTAGAAGCAAACAAGAACTGCATCGCAG 1164
Query 1045 ATGAACATTACTTGCCAACATTCTTCAATATGATTGATCCCATGG-GGA-TCTCAAATTG 1102
||||||||||| |||||||||||||| ||||| ||||||| ||| ||| |||| || ||
Sbjct 1165 ATGAACATTACCTGCCAACATTCTTCCATATGCTTGATCC--TGGAGGAATCTCGAACTG 1222
Query 1103 GTCAGTGACGTTTGTTGATTGGTCTGAACGAAGGTGGCATCCAAAGACATACGGAGGAAA 1162
|||||| || | ||||||||||||||| || || |||||||||||||||||| ||| |
Sbjct 1223 GTCAGTCACATATGTTGATTGGTCTGAGCGTAGATGGCATCCAAAGACATACAGAGCA-- 1280
Query 1163 CGAGAT-T-TCATTAGAATTTAT-GAAAAATGTCACATCCGAGGACATGAGTGTACATGT 1219
|| ||| | ||| | || | | ||||||| |||| ||||| |||||||||||||||||
Sbjct 1281 CGCGATGTCTCACTC-AAGCTCTTGAAAAATATCACGTCCGATGACATGAGTGTACATGT 1339
Query 1220 CACCAGTGTGGGGAAGCATGGAGATGAGCTGCATTGGCCTTGTACATGGAACGGGA-TTA 1278
|| || || || |||| ||||| |||||||||||||||||||||||||| |||| |||
Sbjct 1340 AACAAGCGTTGGCAAGCGCGGAGAAGAGCTGCATTGGCCTTGTACATGGAA-GGGAATTA 1398
Query 1279 AACGGCCTTGCTATCTATTTGCAAGAAAGTTCCA-TCCTGATACTCTCGACACATTGGTC 1337
||| || || |||||||| ||||| ||||| || || ||| |||| ||| | |||||
Sbjct 1399 GACGTCCATGTTATCTATTCGCAAGGAAGTTTCACTCA-GATGCTCTTTACAAACTGGTC 1457
Query 1338 A-ACCTCTTCCCAAACTACACAAACACAGCTG-TCTGAG--AGAGG-A--TTCTTGAA-C 1389
| || |||| ||||||||||| | | ||| || |||||| ||| | |||||||| |
Sbjct 1458 AGAC-TCTTTCCAAACTACACGAGCTCAG-TGGTCTGAGCCAGAAACAAATTCTTGAAAC 1515
Query 1390 CAAACACACACA-TTCTTG 1407
||||| || ||| ||||||
Sbjct 1516 CAAAC-CATACAATTCTTG 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5