BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25890.1

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492228 jgi|Araly1|492228|fgenesh2_kg.7__1661__AT4G25890.1         734    0.0  


> Ahg492228 jgi|Araly1|492228|fgenesh2_kg.7__1661__AT4G25890.1
Length=487

 Score =  734 bits (397),  Expect = 0.0
 Identities = 459/489 (94%), Gaps = 3/489 (1%)
 Strand=Plus/Plus

Query  50   TTTTTCCAGAAATCTCTCACTATCGCCATCGATTTTAGCAGACATTGAAGAAGATGGGAG  109
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTTTTCCAGAAATCTCTCACAATCGCCATCGATTTTAGCAGACATTGAAGAAGATGGGAG  60

Query  110  TATTCACATTCGTATGCAAGAATGGAGGCGGCGCGTGGAGCGCGAAGCAACACGAAGGAG  169
            ||||||||||||| || || ||||| ||||||||||||  ||||||||||||||||||||
Sbjct  61   TATTCACATTCGTGTGTAAAAATGGCGGCGGCGCGTGGTCCGCGAAGCAACACGAAGGAG  120

Query  170  AACTTGAATCTTCAGCTTCTTCTACCTACGAGCTCCAGCGTAAGCTCGTTC-AGGTATCT  228
            |||||||| |||| ||||||||||||||||||||||||||||||||||| | || |  ||
Sbjct  121  AACTTGAAGCTTCCGCTTCTTCTACCTACGAGCTCCAGCGTAAGCTCGTCCAAGCT-GCT  179

Query  229  CTCTCCGCTGATTCCTCCGGTGGCGTTCAGTCTTCGTTTTCTCTTGTCTCCCCTACCTCC  288
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  CTCTCCGCCGATTCCTCCGGTGGCGTTCAGTCTTCGTTTTCTCTTGTCTCCCCTACCTCC  239

Query  289  GCCGTATTCCAGGTAATTGTtggtggtggtggtggtggAGGATTCTCTGCTGGAGGAGCT  348
            |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct  240  GCCGTATTCCAGGTGATTGTCGGTGGTGGTGGTGGTGGAGGATTCGCTGCTGGAGGAGCT  299

Query  349  GCCTCAAGTGGAGGTGGTGCGGGTGAAGCTGCAGCTGCCCCTaaggaagatgagaagaag  408
            |||||  |||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct  300  GCCTCGGGTGGAGGTGGCGCGGGTGAATCTGCAGCTGCTCCTAAGGAAGATGAGAAGAAG  359

Query  409  aaagaagaatcagaagaggaagaaggagaCTTCGGATTCGATCTCTTTGGTTAAGATTGA  468
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct  360  AAAGAAGAATCAGAAGAGGAAGAAGGAGACTTCGGATTTGATCTCTTTGGTTAAGATGGA  419

Query  469  AATAGTATTTTGGAGGTGTTGGTTTGAGCTTTCCATTTTTGTGTGGGGTGTTTCTTCCAT  528
            |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | 
Sbjct  420  AATAGTATTTTGGAGGTGTTAGTTTGAGCTT-CCATTTTTGTGTGGGGTGTTTCTTCTAC  478

Query  529  TGTCAAGTG  537
            ||||| |||
Sbjct  479  TGTCATGTG  487



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22111291860


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5