BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25900.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492227 jgi|Araly1|492227|fgenesh2_kg.7__1660__AT4G25900.1 1888 0.0
> Ahg492227 jgi|Araly1|492227|fgenesh2_kg.7__1660__AT4G25900.1
Length=1301
Score = 1888 bits (1022), Expect = 0.0
Identities = 1189/1267 (94%), Gaps = 22/1267 (2%)
Strand=Plus/Plus
Query 22 TAAGTTTCATTTCCTGTTTTTAGGCTCACTCGTGGACtttttttAATTTCTTTCCTTTGC 81
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2 TAAGTTTCATTTCCTGTTTTTAGGCTCACTCGTTGACTTTTTTCAATTTCTTTCCTTTGG 61
Query 82 CATATTTATAAAATAAAAGAGAGAGAAAGAATTTTCAATAATTTTCAACAAGC-----A- 135
|||||||||||||||| | |||||| || ||| |||||||||||||||||||| |
Sbjct 62 CATATTTATAAAATAAGA-AGAGAG-AA-AATCTTCAATAATTTTCAACAAGCAAAGGAG 118
Query 136 A-A-G-TTCATGATGGGGAATAAGCGAAATCTCGGATTTGTGATCTTCTTCTGGGCTCTG 192
| | | ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 119 AGACGACTCATGATGGGGAATAAGGGAAATCTCGGATTTGTGATCTTCTTATGGGCTCTG 178
Query 193 GTGGTTGCAGTAGTAGCCACGGCCATCGAGCATCGTCGCAATGAGAGGACTAAAGGCGTC 252
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 179 GTGGTTGCAGTAGTAGCCACGGCCATCGAGCATCGTCCCATTGAGAGGACTAAAGGCATT 238
Query 253 AATGGTCTTGACAAGATCATCATCCGCGACCGTCGTGGCCGATCTGCTGAGGTTTACTTG 312
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 AATGGTCTTGACAAGATCATCATCCGCGACCGCCGTGGCCGATCTGCTGAGGTTTACTTG 298
Query 313 TATGGAGGTCAAGTCAGTTCTTGGAAAAATGAGAATGGAGAGGAGTTACTTGTTATGAGT 372
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 299 TATGGAGGTCAAGTGAGTTCTTGGAAGAATGAGAAGGGAGAGGAGTTACTTGTTATGAGT 358
Query 373 AGCAAGGCTATATTCCAGCCTCCAACACCGATTCGTGGAGGAATTCCAGTATTGTTTCCG 432
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 359 AGCAAGGCTATATTTCAGCCTCCAACACCGATTCGTGGGGGAATTCCAGTATTGTTTCCG 418
Query 433 CAATACAGTAACACCGGTCCACTTCCCTCACATGGATTTGTAAGACAGAGGTTCTGGGAG 492
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 419 CAATATAGTAACACCGGTCCACTTCCCTCACATGGATTTGCAAGGCAGAGGTTCTGGGAA 478
Query 493 GTTGAGACTAAACCACCTCCTTTGCCATCACTTTCTACTGCTCATGTTGACCTGATCGTA 552
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 479 GTTGAGGCTAAACCACCTCCTTTGCCATCAATTTCTTCTGCTCATGTTGACCTGATCCTA 538
Query 553 AGATCATCCAATGAGGATTTGAAGATCTGGCCGCATAAGTTTGAGTATAGACTGAGAGTA 612
| |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 539 AAATCATCCAATGATGATTTGAAGATCTGGCCTCATAAGTTTGAGTACCGACTGAGAGTA 598
Query 613 GCATTGGGACATGATGGAGATTTGACGTTAACATCTCGTGTTAAGAATACTGATACAAAA 672
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 599 GCATTGGGACATGATGGAGATTTGACGTTGACATCTCGTGTTAAGAATTCTGATACTAAA 658
Query 673 CCATTTAACTTCACATTTGCTCTTCACCCCTACTTCGCTGTTTCCAATATCAGTGAAATC 732
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 659 CCATTTAACTTCACATTTGCTCTTCACCCCTATTTCGCTGTTTCCAATATCAGTGAAGTC 718
Query 733 CATGTCGAAGGATTACACAACTTGGATTACCTTGACCAACAAAAGAACAGAACACGTTTC 792
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 719 CACGTCGAAGGATTACACAACTTGGATTATCTTGACCAACAAAAGAACAGAACACGTTTC 778
Query 793 ACTGATCATGAGAAGGTTATAACTTTCAATGCTCAACTTGACAGGTTGTACCTAAGCACT 852
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTGATCATGACAAAGTTATAACTTTCAATGCTCAACTTGACAGGTTGTACCTAAGCACT 838
Query 853 CCAGATCAACTAAGAATCGTGGACCATAAGAAAAAGAAGACTATTGTTGTACACAAGGAG 912
||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 839 CCAAATAAACTAAGAATCGTAGACCACAAGAAAAAGAAGACTATTGTTGTACACAAGGAG 898
Query 913 GGACAAGTTGATGCCGTGGTGTGGAATCCATGGGATAAGAAAGTATCCGATTTGGGAGTT 972
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 899 GGACAAGTTGATGCCGTGGTGTGGAATCCATGGGACAAGAAAGTGTCAGATTTGGGAGTT 958
Query 973 GAAGACTATAAGCGTTTTGTAACGGTGGAAAGCGCGGCTGTCGCGAAACCGATCACAGTG 1032
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 GAAGACTATAAGCGTTTTGTAACGGTGGAAAGCGCGGCTGTCGAGAAACCGATCACAGTG 1018
Query 1033 AACCCCGGCAAAGAATGGAAAGGAATACTCCATGTTTCTGTGGTTCCATCAAATCGGAAA 1092
|||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||||
Sbjct 1019 AACCCCGGCAAAGAATGGAAAGGAATACTCCAAGTATCTGTGGTTCCTTCAAATTGGAAA 1078
Query 1093 GCTTGACCCTATAAAAGTCTTGCATTCATCATCCTCATCCTTTaaaaaaaaaaaCTTAAA 1152
|||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1079 GCTTGAACCTA-AAAAGTCTTGCATTCATCATCCTCATC-TT-AAAAAAAAAAACTTAAA 1135
Query 1153 A-CTGTCTTTATTAAAGTATA--CTTAATGTTCCCGAGAGACATCACATGGTGAACACAA 1209
| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1136 AACTGTCTTTATTAAAATATATACTTAATGTTCCCGAGAGACATCACATGGTGAACACAA 1195
Query 1210 AGTTAGTTGGGTTCCAAACTGGACTCTTGACCAGTTTTATTGTTTTGTAACTTTAGCATT 1269
||||||||||||||||||||||||||| ||||||||| |||||||||||| | || |||
Sbjct 1196 AGTTAGTTGGGTTCCAAACTGGACTCT-GACCAGTTTCATTGTTTTGTAA-T--AGTATT 1251
Query 1270 CATGAAT 1276
|||||||
Sbjct 1252 CATGAAT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5