BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25910.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492226 jgi|Araly1|492226|fgenesh2_kg.7__1659__AT4G25910.1 1345 0.0
> Ahg492226 jgi|Araly1|492226|fgenesh2_kg.7__1659__AT4G25910.1
Length=1007
Score = 1345 bits (728), Expect = 0.0
Identities = 935/1028 (91%), Gaps = 41/1028 (4%)
Strand=Plus/Plus
Query 1 AAATCATCTCCAAGACGTATCAATATCATCATCAATCCACCAATGAAAAGTTCTCTCttt 60
||||||||||||||||||||| || ||||||| |||||||||||||||||||| || |
Sbjct 1 AAATCATCTCCAAGACGTATC-AT-CCATCATC-ATCCACCAATGAAAAGTTCTGTC--T 55
Query 61 ttttttCCCACTCTTACTCTGTTCTC-GCTACAGAATCTCCTGGGaaaaaaaaaaaaGAA 119
|||||| | | |||||||||||| || |||| | ||||||| |||||| ||
Sbjct 56 TTTTTT----C-C-TACTCTGTTCTCGGC-CCAGATTTTCCTGGG------AAAAAA-AA 101
Query 120 ACTTGATCCACCCGAATTCCCCAAATCTTCACAATTTCTGGAAACTCTCTCGATCGTGAA 179
||| |||||||||||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct 102 ACTCAATCCACCCGAATTCCCCAAATCTTCATTGTTTCAGGAAATTTTCTCGATCGTGAA 161
Query 180 GCAGAAAAGTGAGGTTCCAAATGGGTTCTGTTTCGGGTCAAACCCGAATTACAACGATGA 239
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 162 GCAGAAAAGTGAGGATCCAAATGGGTTCGGTTTCGGGTCAAACCCGAATTACAACGATGA 221
Query 240 ACCTCTCGCTCTCAACAGCAGAGAAGAACCCTAATTTCCGCTCGTCGCTTCTCAATTCTA 299
|||||||||||||| ||||||| ||||| ||||||||||||| |||||||| ||||| |
Sbjct 222 ACCTCTCGCTCTCATCAGCAGATAAGAATCCTAATTTCCGCTTATCGCTTCTAAATTCGA 281
Query 300 AGAACGCAATTTCAGATACTTTAGGGGTCTCTTCCAAATGCAGTACATTCCTCAGGGGTC 359
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 282 AGAACGCAATTTCAGATAGTTTAGGAGTCTCTTCCAAATGCAGTACATTCCTCAGGGGTC 341
Query 360 AATTTCAAAGAATACATTTTTC-TTGGCTACAACACACTCGACCTTTGAG-A-A--A--A 412
|||||||||||||||||||||| || | | |||||||||||||||||||| | | | |
Sbjct 342 AATTTCAAAGAATACATTTTTCTTTAG-TTCAACACACTCGACCTTTGAGAACACGATCA 400
Query 413 CGAACAGTATTTGGTCACGTGAGCTGCGTCATGCCGTTAACGGAAGAGAATGTGGAGAGA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CGAACAGTATTTGGTCACGTGAGCTGCGTCATGCCGTTAACGGAAGAGAATGTGGAGAGA 460
Query 473 GTGTTAGACGAAGTACGACCATCTCTAATGGCCGACGGAGGAAACGTGGCGTTGCACGAA 532
||| |||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 461 GTGCTAGATGAAGTACGACCATCTTTAATGGCTGACGGAGGAAACGTGGCGCTGCACGAA 520
Query 533 ATCGACGGACTTGTGGTGGTTTTAAAGCTACAAGGAGCTTGTGGTTCGTGTCCTAGCTCA 592
||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 521 ATCGACGGACTTGTGGTTGTTCTAAAGCTACAAGGAGCTTGTGGCTCGTGTCCTAGCTCG 580
Query 593 TCAATGACGTTGAAGATGGGAATCGAGAGTCGTCTTCGAGACAAGATTCCAGAGATCATG 652
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TCAATGACATTGAAGATGGGAATCGAGAGTCGTCTTCGAGACAAGATTCCAGAGATCATG 640
Query 653 TCCGTTGAGCAGTTTCTTGAATCCGAGACAGGAGGTTTAGAGCTGAACGATGAGAACATT 712
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 641 TCCGTTGAGCAGTTTCTTGAATCCGAGACTGGCGGGTTAGAGCTGAACGATGAGAACATT 700
Query 713 GAGAAGGTTCTCTCTGAGTTAAGGCCGTACCTATCCGGTACTGGAGGTGGGGGGCTTGAG 772
|| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 701 GAAAAGGTTCTCTCTGAGCTAAGGCCGTACCTATCCGGTACGGGAGGTGGGGGGCTTGAG 760
Query 773 TTAGTTGAGATTGATGGTTACGTGGTCAAGGTTCGACTCACTGGACCAGCTGCTGGAGTC 832
| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 761 CTGGTTGAGATTGATGGTTACGTGGTTAAGGTTCGGCTCACTGGACCAGCTGCTGGAGTC 820
Query 833 ATGACTGTTCGTGTCGCGTTGACTCAAAAACTGAGGGAAA-CAATTCCTTCTATAGGTGC 891
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 821 ATGACTGTTCGTGTCGCGTTGACTCAAAAACTGAGGGAAAACA-TTCCTTCTATTGGTGC 879
Query 892 AGTCCAGCTTCTAGAGTGACATTAACCTTTTT-ATTTTGTAACTT-----AT--AT--AC 941
|||||||||||||||||||||||||||||||| |||||||||||| || || ||
Sbjct 880 AGTCCAGCTTCTAGAGTGACATTAACCTTTTTTATTTTGTAACTTCTTCTATTCATCTAC 939
Query 942 AAGGCCTATTTTTGATTCAATATATTTTATTTCCAA-TTATATAATTAGTACAACTAATA 1000
|||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||||
Sbjct 940 AAGGCCTATTTTTGATTCTATATATTTTATTTCCAAATTCTAGAATTAGTACAATTAATA 999
Query 1001 CAATAACC 1008
|||| |||
Sbjct 1000 CAATGACC 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5