BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25920.1 Length=1204 Score E Sequences producing significant alignments: (Bits) Value Ahg492225 jgi|Araly1|492225|fgenesh2_kg.7__1658__AT4G25920.1 1585 0.0 Ahg945488 jgi|Araly1|945488|scaffold_701717.1 259 3e-68 Ahg946973 jgi|Araly1|946973|scaffold_703202.1 167 2e-40 Ahg946972 jgi|Araly1|946972|scaffold_703201.1 167 2e-40 > Ahg492225 jgi|Araly1|492225|fgenesh2_kg.7__1658__AT4G25920.1 Length=1197 Score = 1585 bits (858), Expect = 0.0 Identities = 1096/1205 (91%), Gaps = 40/1205 (3%) Strand=Plus/Plus Query 1 ATGTCAAAGCTTATAATCAACCGAATATTCAAACCCTCTGTCTGCAAAAATTTCCTCAGA 60 |||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||||||| Sbjct 1 ATGTCACAGCTTATAATCAACAGAATGTTCAAACCCTCTGTCTGCAAAAAATTCCTCAGA 60 Query 61 CACGCAAACGTTCGTCTGTTCTCATCTG-----CA-AC-------------T-C----AC 96 || |||||||||||||||||||||||| || || | | || Sbjct 61 CAAACAAACGTTCGTCTGTTCTCATCTGCAACTCACACGAGTGGGTTGGAGTCCGATGAC 120 Query 97 ACGAGTACTAAAGTGAATCAGCCCTTCTCGTCTAAACCAGCCTTCCCGTTTCTGTTGATT 156 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAGAGTAGTAAAGTGAATCAGCCCTTCTCGTCTAAACCAGCCTTCCCGTTTCTGTTGATT 180 Query 157 GACTACATCCTAAACAACCCAAACTCTTCCTCCGATGGTCGCGTAACAACAAACGTTTAC 216 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 181 GACTACATCCTTAACAACCCAAACTCTTCCTCGGATGGTCGCGTAACAACAAACGATTAC 240 Query 217 -GGT--AATGAAAAGGAAGTCTTGATTAAGGACAAGGATCTTAAGGAGGAGGTCTGTGAT 273 | | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 241 TGTTCCAATGAAAAGGAAGTCTTGATTAAGGACAAAGATCTCAAGGAGGAGGTCTGTGAT 300 Query 274 GCGATGACTGTCGGGTTTTCTCGTGATGGGTTGCGAGTCGAGCTTTGTGGCAACCACGGC 333 ||||||||||| || ||||| |||||||| ||||||||| ||||||||| |||| ||| | Sbjct 301 GCGATGACTGTAGGATTTTCACGTGATGGATTGCGAGTCAAGCTTTGTGACAACTACGAC 360 Query 334 GAT-G--TATGTTCTCCCACCATCTTTTACAAGCCTACTGACCCCGAAATAGAAGACTTG 390 ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 361 GATAGTTTATGTTCTCCCACCATCTTTTACAAGCCTACTGACCCCGAACTAGAAGACGTG 420 Query 391 ACCGTTGATCTACCTCCTCTA-CCGACGGGTTCACAAATCCAAAGCCTGGTCATGTCCTC 449 |||||| |||||||||||||| || || ||||| |||||||||||||||| ||||||||| Sbjct 421 ACCGTTTATCTACCTCCTCTAGCC-ACAGGTTCCCAAATCCAAAGCCTGGCCATGTCCTC 479 Query 450 TTTACCTAAACGAGACAAAAATTGGGTAGTTGTTGTCAAGTTATTGGGATCTCAGTTGAG 509 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 480 TTTACCTAAACGAGATAAAAATTGGGTAGTCGTTGTCAAGTTATTGGGATCTCAGTTGAG 539 Query 510 TATGTGCAGGCCTTTTGGCAGCCGTAAATGGATCAACATCCAAACCAAGCCTCAGAATAT 569 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 540 TATGTGCAGGCCTTTTGGCAGCCGTAAATGGATCAACATCAAAACCAAGCCTCAGAATAT 599 Query 570 AAACCCTTCATCGAGCATCATGTTTTCCAAGAAAGAGAAAAAGTTCTACGTTCCAACTCC 629 |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 600 AAACCCTTTATCGAGCATCATGTTTTCCAAGAAAGATAAAAAGTTCTACATTCCAACTCC 659 Query 630 CGGAGGCAACATCTTGTGCTATTTGGAT-CCTCACTCAGAGGACGACGACCTAATTGATT 688 ||| |||||||||||||||||||||||| ||| | |||||||||||||||| ||| |||| Sbjct 660 CGGTGGCAACATCTTGTGCTATTTGGATCCCT-ATTCAGAGGACGACGACCAAATCGATT 718 Query 689 TCGTGGAATTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGA 748 || | || ||||| ||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 719 TCCTCGACTTGGATTTTGACGATCTTCCAGAATCGGTGTTTCAAGAGTTGGCGGACGTGA 778 Query 749 GTACATGTTCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCA 808 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 779 GTACATGTTCTAGGACGGACCACCTAGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCA 838 Query 809 AGTGGTATGGAGAGGATTTAGAGGACATTGACAACACCACACTGTATAATGTAACAAAAA 868 |||||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||| Sbjct 839 AGTGGTATGGCGAGGATTTCGAGGACATTGACAACTGCACACTGTATCATGTAACAAAAA 898 Query 869 AGTTCATGGTGTTTAAAGAGGGAGAGAAACCGAGTTGTGTCTACACTAAGAAGATGATCT 928 ||||||||||||||| ||||| |||| |||||| || |||| |||||||||||||| Sbjct 899 AGTTCATGGTGTTTAGAGAGGAAGAGCAACCGA---GTAAATACAGTAAGAAGATGATCT 955 Query 929 ATACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGACATAGTGAGGCTTTCTGCGTCC 988 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 956 ACACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGTCATAGTGAGGCTTTCTGCGTCC 1015 Query 989 CGGCTAGCTCGTCCCCTGGCCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTTG 1048 | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1016 CAGCTAGCTCATCCCCTGGACTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTTG 1075 Query 1049 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAAAAGATGATAATCCAT 1108 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 1076 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAGAAGATGAAAATCCAT 1135 Query 1109 TAAGGAAATTGGAATTCCCTTACTGGCCTCCTCCGGCTTCCTTTCCAGTACTAGCTCCTA 1168 |||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||| Sbjct 1136 TAAGGAAATTGGAATTCCCTTACTGGCCTCCTCCGGCTTCCTCTCCAC--C-AGCTTCTA 1192 Query 1169 ATTAA 1173 ||||| Sbjct 1193 ATTAA 1197 > Ahg945488 jgi|Araly1|945488|scaffold_701717.1 Length=1044 Score = 259 bits (140), Expect = 3e-68 Identities = 191/215 (89%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 931 ACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGACATAGTGAGGCTTTCTGCGTCCCG 990 |||||||||||||||||||||||||| ||| |||| |||||||||||||||||| ||| | Sbjct 792 ACAGAAGACATTGGAGATCTTTGCATCTTTCTTGGGCATAGTGAGGCTTTCTGCATCCAG 851 Query 991 GCTAGCTCGT-CCCCTGGCCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTT-G 1048 || || || | |||| || ||||||||||||||||||||||||||||||||||| ||| | Sbjct 852 GCCAGTTCTTGCCCC-GGGCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAA-TTTCG 909 Query 1049 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCT-CACAAAAGATGATAATCCA 1107 |||| ||||||||||||||||||||||||||||| ||| | ||| |||| || |||| Sbjct 910 GTGTGTATGATCTCACCACCAAAACTTGCACTATCTTC-TACACGGAAGAGGACGTTCCA 968 Query 1108 TTAAGGAAATTGGAATTCCCTTACTGGCCTCCTCC 1142 |||||||| |||||||||||||||||||||||||| Sbjct 969 TTAAGGAACTTGGAATTCCCTTACTGGCCTCCTCC 1003 > Ahg946973 jgi|Araly1|946973|scaffold_703202.1 Length=672 Score = 167 bits (90), Expect = 2e-40 Identities = 110/120 (92%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 697 TTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGAGTACATGT 756 ||||| || ||| |||||||||| |||||| |||| |||||||| ||||||||| ||||| Sbjct 495 TTGGAATTCGACAATCTTCCAAAGTCGGTGATTCATGAGTTGGCGGACGTGAGTTCATGT 554 Query 757 TCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCAAGTGGTAT 816 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 555 TCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTTGTCAAGTGGTAT 614 > Ahg946972 jgi|Araly1|946972|scaffold_703201.1 Length=706 Score = 167 bits (90), Expect = 2e-40 Identities = 155/185 (84%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 634 GGCAACATCTTGTGCTATTTGGATCCTC-ACTC--A-GAGGACGACGA-CCTAATTGATT 688 |||||| |||||||||| |||| | ||| |||| | ||| | ||||| || || | | Sbjct 468 GGCAACTTCTTGTGCTACTTGGGT-CTCAACTCTAAGGAGAATGACGAGCCCAA--G--T 522 Query 689 TCGTGGAATTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGA 748 | | || ||||| |||||| | |||||||| || |||||||| |||||||| ||||||| Sbjct 523 CCATCGACTTGGAATTTGACAAACTTCCAAAGTCTGTGTTTCAGGAGTTGGCGGACGTGA 582 Query 749 GTACATGTTCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCA 808 || ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 583 GTTCATGTTCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCA 642 Query 809 AGTGG 813 ||||| Sbjct 643 AGTGG 647 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44946919143 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5