BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25920.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492225 jgi|Araly1|492225|fgenesh2_kg.7__1658__AT4G25920.1 1585 0.0
Ahg945488 jgi|Araly1|945488|scaffold_701717.1 259 3e-68
Ahg946973 jgi|Araly1|946973|scaffold_703202.1 167 2e-40
Ahg946972 jgi|Araly1|946972|scaffold_703201.1 167 2e-40
> Ahg492225 jgi|Araly1|492225|fgenesh2_kg.7__1658__AT4G25920.1
Length=1197
Score = 1585 bits (858), Expect = 0.0
Identities = 1096/1205 (91%), Gaps = 40/1205 (3%)
Strand=Plus/Plus
Query 1 ATGTCAAAGCTTATAATCAACCGAATATTCAAACCCTCTGTCTGCAAAAATTTCCTCAGA 60
|||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCACAGCTTATAATCAACAGAATGTTCAAACCCTCTGTCTGCAAAAAATTCCTCAGA 60
Query 61 CACGCAAACGTTCGTCTGTTCTCATCTG-----CA-AC-------------T-C----AC 96
|| |||||||||||||||||||||||| || || | | ||
Sbjct 61 CAAACAAACGTTCGTCTGTTCTCATCTGCAACTCACACGAGTGGGTTGGAGTCCGATGAC 120
Query 97 ACGAGTACTAAAGTGAATCAGCCCTTCTCGTCTAAACCAGCCTTCCCGTTTCTGTTGATT 156
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGAGTAGTAAAGTGAATCAGCCCTTCTCGTCTAAACCAGCCTTCCCGTTTCTGTTGATT 180
Query 157 GACTACATCCTAAACAACCCAAACTCTTCCTCCGATGGTCGCGTAACAACAAACGTTTAC 216
||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 181 GACTACATCCTTAACAACCCAAACTCTTCCTCGGATGGTCGCGTAACAACAAACGATTAC 240
Query 217 -GGT--AATGAAAAGGAAGTCTTGATTAAGGACAAGGATCTTAAGGAGGAGGTCTGTGAT 273
| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 241 TGTTCCAATGAAAAGGAAGTCTTGATTAAGGACAAAGATCTCAAGGAGGAGGTCTGTGAT 300
Query 274 GCGATGACTGTCGGGTTTTCTCGTGATGGGTTGCGAGTCGAGCTTTGTGGCAACCACGGC 333
||||||||||| || ||||| |||||||| ||||||||| ||||||||| |||| ||| |
Sbjct 301 GCGATGACTGTAGGATTTTCACGTGATGGATTGCGAGTCAAGCTTTGTGACAACTACGAC 360
Query 334 GAT-G--TATGTTCTCCCACCATCTTTTACAAGCCTACTGACCCCGAAATAGAAGACTTG 390
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 361 GATAGTTTATGTTCTCCCACCATCTTTTACAAGCCTACTGACCCCGAACTAGAAGACGTG 420
Query 391 ACCGTTGATCTACCTCCTCTA-CCGACGGGTTCACAAATCCAAAGCCTGGTCATGTCCTC 449
|||||| |||||||||||||| || || ||||| |||||||||||||||| |||||||||
Sbjct 421 ACCGTTTATCTACCTCCTCTAGCC-ACAGGTTCCCAAATCCAAAGCCTGGCCATGTCCTC 479
Query 450 TTTACCTAAACGAGACAAAAATTGGGTAGTTGTTGTCAAGTTATTGGGATCTCAGTTGAG 509
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 TTTACCTAAACGAGATAAAAATTGGGTAGTCGTTGTCAAGTTATTGGGATCTCAGTTGAG 539
Query 510 TATGTGCAGGCCTTTTGGCAGCCGTAAATGGATCAACATCCAAACCAAGCCTCAGAATAT 569
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 TATGTGCAGGCCTTTTGGCAGCCGTAAATGGATCAACATCAAAACCAAGCCTCAGAATAT 599
Query 570 AAACCCTTCATCGAGCATCATGTTTTCCAAGAAAGAGAAAAAGTTCTACGTTCCAACTCC 629
|||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 600 AAACCCTTTATCGAGCATCATGTTTTCCAAGAAAGATAAAAAGTTCTACATTCCAACTCC 659
Query 630 CGGAGGCAACATCTTGTGCTATTTGGAT-CCTCACTCAGAGGACGACGACCTAATTGATT 688
||| |||||||||||||||||||||||| ||| | |||||||||||||||| ||| ||||
Sbjct 660 CGGTGGCAACATCTTGTGCTATTTGGATCCCT-ATTCAGAGGACGACGACCAAATCGATT 718
Query 689 TCGTGGAATTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGA 748
|| | || ||||| ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 719 TCCTCGACTTGGATTTTGACGATCTTCCAGAATCGGTGTTTCAAGAGTTGGCGGACGTGA 778
Query 749 GTACATGTTCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCA 808
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 779 GTACATGTTCTAGGACGGACCACCTAGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCA 838
Query 809 AGTGGTATGGAGAGGATTTAGAGGACATTGACAACACCACACTGTATAATGTAACAAAAA 868
|||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct 839 AGTGGTATGGCGAGGATTTCGAGGACATTGACAACTGCACACTGTATCATGTAACAAAAA 898
Query 869 AGTTCATGGTGTTTAAAGAGGGAGAGAAACCGAGTTGTGTCTACACTAAGAAGATGATCT 928
||||||||||||||| ||||| |||| |||||| || |||| ||||||||||||||
Sbjct 899 AGTTCATGGTGTTTAGAGAGGAAGAGCAACCGA---GTAAATACAGTAAGAAGATGATCT 955
Query 929 ATACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGACATAGTGAGGCTTTCTGCGTCC 988
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 956 ACACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGTCATAGTGAGGCTTTCTGCGTCC 1015
Query 989 CGGCTAGCTCGTCCCCTGGCCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTTG 1048
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAGCTAGCTCATCCCCTGGACTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTTG 1075
Query 1049 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAAAAGATGATAATCCAT 1108
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1076 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAGAAGATGAAAATCCAT 1135
Query 1109 TAAGGAAATTGGAATTCCCTTACTGGCCTCCTCCGGCTTCCTTTCCAGTACTAGCTCCTA 1168
|||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||
Sbjct 1136 TAAGGAAATTGGAATTCCCTTACTGGCCTCCTCCGGCTTCCTCTCCAC--C-AGCTTCTA 1192
Query 1169 ATTAA 1173
|||||
Sbjct 1193 ATTAA 1197
> Ahg945488 jgi|Araly1|945488|scaffold_701717.1
Length=1044
Score = 259 bits (140), Expect = 3e-68
Identities = 191/215 (89%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 931 ACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGACATAGTGAGGCTTTCTGCGTCCCG 990
|||||||||||||||||||||||||| ||| |||| |||||||||||||||||| ||| |
Sbjct 792 ACAGAAGACATTGGAGATCTTTGCATCTTTCTTGGGCATAGTGAGGCTTTCTGCATCCAG 851
Query 991 GCTAGCTCGT-CCCCTGGCCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTT-G 1048
|| || || | |||| || ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 852 GCCAGTTCTTGCCCC-GGGCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAA-TTTCG 909
Query 1049 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCT-CACAAAAGATGATAATCCA 1107
|||| ||||||||||||||||||||||||||||| ||| | ||| |||| || ||||
Sbjct 910 GTGTGTATGATCTCACCACCAAAACTTGCACTATCTTC-TACACGGAAGAGGACGTTCCA 968
Query 1108 TTAAGGAAATTGGAATTCCCTTACTGGCCTCCTCC 1142
|||||||| ||||||||||||||||||||||||||
Sbjct 969 TTAAGGAACTTGGAATTCCCTTACTGGCCTCCTCC 1003
> Ahg946973 jgi|Araly1|946973|scaffold_703202.1
Length=672
Score = 167 bits (90), Expect = 2e-40
Identities = 110/120 (92%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 697 TTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGAGTACATGT 756
||||| || ||| |||||||||| |||||| |||| |||||||| ||||||||| |||||
Sbjct 495 TTGGAATTCGACAATCTTCCAAAGTCGGTGATTCATGAGTTGGCGGACGTGAGTTCATGT 554
Query 757 TCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCAAGTGGTAT 816
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 555 TCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTTGTCAAGTGGTAT 614
> Ahg946972 jgi|Araly1|946972|scaffold_703201.1
Length=706
Score = 167 bits (90), Expect = 2e-40
Identities = 155/185 (84%), Gaps = 10/185 (5%)
Strand=Plus/Plus
Query 634 GGCAACATCTTGTGCTATTTGGATCCTC-ACTC--A-GAGGACGACGA-CCTAATTGATT 688
|||||| |||||||||| |||| | ||| |||| | ||| | ||||| || || | |
Sbjct 468 GGCAACTTCTTGTGCTACTTGGGT-CTCAACTCTAAGGAGAATGACGAGCCCAA--G--T 522
Query 689 TCGTGGAATTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGA 748
| | || ||||| |||||| | |||||||| || |||||||| |||||||| |||||||
Sbjct 523 CCATCGACTTGGAATTTGACAAACTTCCAAAGTCTGTGTTTCAGGAGTTGGCGGACGTGA 582
Query 749 GTACATGTTCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCA 808
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 583 GTTCATGTTCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCA 642
Query 809 AGTGG 813
|||||
Sbjct 643 AGTGG 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5