BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25930.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945486 jgi|Araly1|945486|scaffold_701715.1 717 0.0
> Ahg945486 jgi|Araly1|945486|scaffold_701715.1
Length=892
Score = 717 bits (388), Expect = 0.0
Identities = 495/546 (91%), Gaps = 9/546 (2%)
Strand=Plus/Plus
Query 561 GAAGAATAAAAAATTTCTCAGTGTTAGTCCTTCTGGGACGTATCTT-TGGTACTTGGATC 619
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct 329 GAAGAATAAAAAATTTCTCAGTGTTAGTCCTTCTGGGAAGTAT-TTGTGGTACTTGGATC 387
Query 620 TTCACTTCGATGAGGATGATGTCGAGCCCTACTCATCATATTTATAT-TTTAGGGAGGAC 678
| ||||||||||||||| ||||| ||||| ||| ||| ||||||| | |||| |||||||
Sbjct 388 TCCACTTCGATGAGGATAATGTCCAGCCCAACTTATCTTATTTAT-TGTTTAAGGAGGAC 446
Query 679 CCTCTCCTGAGGTTGTATAAGATGGATTTGGAAGATTACATCTGGCGTTTCAGAACAGAC 738
||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 447 CCTCTCCAGAAGTTGTATAAGACGGATTTGGAAGATTACATCTGGCGTTCCAGAACAGAC 506
Query 739 CACCTGGCGGAGTTACCCTCCGGTGAACATTTCCTCGTCAAGTGGTTCTTTAAGGACGTG 798
||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 507 CACCTGGTGGAGTCACCCTCCGGTGAACATTTCCTCGTCAAGTGGTTCTGTGAGGA--AG 564
Query 799 ATGATGAACGTGGGGAAAATCACCCAGAAAACGGATGGGTTTAAGGTGTTTAGAGTGGAT 858
| | | ||| | |||||||| |||||||||| ||||||||| ||||||||||| ||||
Sbjct 565 A-CAGGGACGACGAGAAAATCATCCAGAAAACGCATGGGTTTATGGTGTTTAGAGCGGAT 623
Query 859 ACAATTTGCGGTCACTTGACTAACACGCAAGACATTGGAGATCTTTGTATCTTTCTTGGA 918
||||| |||||| | |||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct 624 ACAATCTGCGGTGAATTGATTAACACGCAAGACATTGGAAATCTTTGTATATTTCTTGGA 683
Query 919 CATGGTGAAGCATACTGTGTCCCGGCAAGCTCGTCTCCTGGACTCAGACCTAACTCCATC 978
||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 684 CATGGTGAAGCATTCTGTGTCCCGGCAAGCTCGTCTCCTGGACTTATACCTAACTCCATC 743
Query 979 TATTATGTGGGCTGTAACTTTGGTGTTCACGATATTGCAACCGACACTACCACTAACTTC 1038
||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 744 TATTACGTGGGCTGTAACTTTGGTGTTCACGATATCGCAACCAACACTACCACTAACTTC 803
Query 1039 TACACACACAG-TAATGTTCCTTTAAGGTCCACTGAGTTCCCTTACTGGCCTCTTCCTCT 1097
|||||| | || ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 804 TACACA-AAAGATAAAGTTCCATTAAGGTCCACTGAGTTCCCTTACTGGCCTCTTCCTCT 862
Query 1098 CTCTTA 1103
||||||
Sbjct 863 CTCTTA 868
Score = 407 bits (220), Expect = 1e-112
Identities = 289/319 (91%), Gaps = 17/319 (5%)
Strand=Plus/Plus
Query 1 ATGTCTCAGCTCATAAACCGACTTTTGAAGCCATCTGTCTGCAAAAATGTCATCAGATCT 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCTCAGCTCATTAACCGACTCTTGAAGCCATCTGTCTGCAAAAATGTCATCAGATCT 80
Query 61 CACAGCAAGCAGGTTCGGATGTTCTC--C-TCTAAGCCGACATACCCGTACTTGTTGATT 117
|||| |||| | |||||||||||||| | |||||| |||||||||||||| ||||||||
Sbjct 81 CACAACAAGAACGTTCGGATGTTCTCATCATCTAAGTCGACATACCCGTACGTGTTGATT 140
Query 118 GACCACCTCCTTAAGACGACGGAACACTGTTCCAATGATCAAGTATACTACGATGATAAA 177
||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 141 GACCACCTCCTTAAGACGACGAAACACTGTTCCAATGATCAAGTATACTATGCTGATAA- 199
Query 178 TATTACGAAAAGAATCTCGTGATTAAGGACCAGGGACTCGCAGAGGAGGTCCGAGAGGTG 237
||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 200 ------GAA--G---CTCGTGATTAAGGACCAGGGACTCGCAGAGGAGGTCCGAGAGATG 248
Query 238 ATGACCGTTGGATTTTCACATAAAGATG-ATTGGAGAGTTCACTTGGAGAAATCTGAGGA 296
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 249 ATGACCGTTGGATTTTCACATAAAGATGGAT-GGAGAGTTCACTTGGAGAAATCTGAGTA 307
Query 297 TAGTTCCACAAGTCTCATG 315
|||||||| ||||||||||
Sbjct 308 TAGTTCCAAAAGTCTCATG 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5