BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25930.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg945486 jgi|Araly1|945486|scaffold_701715.1 717 0.0 > Ahg945486 jgi|Araly1|945486|scaffold_701715.1 Length=892 Score = 717 bits (388), Expect = 0.0 Identities = 495/546 (91%), Gaps = 9/546 (2%) Strand=Plus/Plus Query 561 GAAGAATAAAAAATTTCTCAGTGTTAGTCCTTCTGGGACGTATCTT-TGGTACTTGGATC 619 |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| Sbjct 329 GAAGAATAAAAAATTTCTCAGTGTTAGTCCTTCTGGGAAGTAT-TTGTGGTACTTGGATC 387 Query 620 TTCACTTCGATGAGGATGATGTCGAGCCCTACTCATCATATTTATAT-TTTAGGGAGGAC 678 | ||||||||||||||| ||||| ||||| ||| ||| ||||||| | |||| ||||||| Sbjct 388 TCCACTTCGATGAGGATAATGTCCAGCCCAACTTATCTTATTTAT-TGTTTAAGGAGGAC 446 Query 679 CCTCTCCTGAGGTTGTATAAGATGGATTTGGAAGATTACATCTGGCGTTTCAGAACAGAC 738 ||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 447 CCTCTCCAGAAGTTGTATAAGACGGATTTGGAAGATTACATCTGGCGTTCCAGAACAGAC 506 Query 739 CACCTGGCGGAGTTACCCTCCGGTGAACATTTCCTCGTCAAGTGGTTCTTTAAGGACGTG 798 ||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||| | Sbjct 507 CACCTGGTGGAGTCACCCTCCGGTGAACATTTCCTCGTCAAGTGGTTCTGTGAGGA--AG 564 Query 799 ATGATGAACGTGGGGAAAATCACCCAGAAAACGGATGGGTTTAAGGTGTTTAGAGTGGAT 858 | | | ||| | |||||||| |||||||||| ||||||||| ||||||||||| |||| Sbjct 565 A-CAGGGACGACGAGAAAATCATCCAGAAAACGCATGGGTTTATGGTGTTTAGAGCGGAT 623 Query 859 ACAATTTGCGGTCACTTGACTAACACGCAAGACATTGGAGATCTTTGTATCTTTCTTGGA 918 ||||| |||||| | |||| ||||||||||||||||||| |||||||||| ||||||||| Sbjct 624 ACAATCTGCGGTGAATTGATTAACACGCAAGACATTGGAAATCTTTGTATATTTCTTGGA 683 Query 919 CATGGTGAAGCATACTGTGTCCCGGCAAGCTCGTCTCCTGGACTCAGACCTAACTCCATC 978 ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 684 CATGGTGAAGCATTCTGTGTCCCGGCAAGCTCGTCTCCTGGACTTATACCTAACTCCATC 743 Query 979 TATTATGTGGGCTGTAACTTTGGTGTTCACGATATTGCAACCGACACTACCACTAACTTC 1038 ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 744 TATTACGTGGGCTGTAACTTTGGTGTTCACGATATCGCAACCAACACTACCACTAACTTC 803 Query 1039 TACACACACAG-TAATGTTCCTTTAAGGTCCACTGAGTTCCCTTACTGGCCTCTTCCTCT 1097 |||||| | || ||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 804 TACACA-AAAGATAAAGTTCCATTAAGGTCCACTGAGTTCCCTTACTGGCCTCTTCCTCT 862 Query 1098 CTCTTA 1103 |||||| Sbjct 863 CTCTTA 868 Score = 407 bits (220), Expect = 1e-112 Identities = 289/319 (91%), Gaps = 17/319 (5%) Strand=Plus/Plus Query 1 ATGTCTCAGCTCATAAACCGACTTTTGAAGCCATCTGTCTGCAAAAATGTCATCAGATCT 60 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 21 ATGTCTCAGCTCATTAACCGACTCTTGAAGCCATCTGTCTGCAAAAATGTCATCAGATCT 80 Query 61 CACAGCAAGCAGGTTCGGATGTTCTC--C-TCTAAGCCGACATACCCGTACTTGTTGATT 117 |||| |||| | |||||||||||||| | |||||| |||||||||||||| |||||||| Sbjct 81 CACAACAAGAACGTTCGGATGTTCTCATCATCTAAGTCGACATACCCGTACGTGTTGATT 140 Query 118 GACCACCTCCTTAAGACGACGGAACACTGTTCCAATGATCAAGTATACTACGATGATAAA 177 ||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| Sbjct 141 GACCACCTCCTTAAGACGACGAAACACTGTTCCAATGATCAAGTATACTATGCTGATAA- 199 Query 178 TATTACGAAAAGAATCTCGTGATTAAGGACCAGGGACTCGCAGAGGAGGTCCGAGAGGTG 237 ||| | |||||||||||||||||||||||||||||||||||||||||| || Sbjct 200 ------GAA--G---CTCGTGATTAAGGACCAGGGACTCGCAGAGGAGGTCCGAGAGATG 248 Query 238 ATGACCGTTGGATTTTCACATAAAGATG-ATTGGAGAGTTCACTTGGAGAAATCTGAGGA 296 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 249 ATGACCGTTGGATTTTCACATAAAGATGGAT-GGAGAGTTCACTTGGAGAAATCTGAGTA 307 Query 297 TAGTTCCACAAGTCTCATG 315 |||||||| |||||||||| Sbjct 308 TAGTTCCAAAAGTCTCATG 326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5