BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25940.1
Length=2138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492223 jgi|Araly1|492223|fgenesh2_kg.7__1656__AT4G25940.1 2979 0.0
Ahg917426 jgi|Araly1|917426|Al_scaffold_0008_2177 1382 0.0
Ahg887320 jgi|Araly1|887320|Al_scaffold_0161_2 579 4e-164
> Ahg492223 jgi|Araly1|492223|fgenesh2_kg.7__1656__AT4G25940.1
Length=2097
Score = 2979 bits (1613), Expect = 0.0
Identities = 1976/2139 (92%), Gaps = 73/2139 (3%)
Strand=Plus/Plus
Query 23 TAAGGCGACTAACAACAGAGCATATCAAAAACTTGGTCTTCGTCTTCTTCATCCTTATCT 82
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 TAAGGCGACTAATAACAGAGCATA-C-CAAACTTGGTCTTCGTCTTCTTCATCCTTATCT 58
Query 83 TCT-C-T--T-T--T--CTC-CATCTCTCCGTCCTAACCAAATCATTTCACAATTCCGGT 132
||| | | | | | ||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 59 TCTCCATCCTCTCCTCACTCTC-TCTCTCCGTCGTAACCAAATCATTTCACAATTCCGGT 117
Query 133 GATCGCCGGAATTATCAAGAAATTTATCCAGATTCCGATTTATCGC-TAGATGGCAACGT 191
||||||| | | || | || || | || |||| || | |||||||||||||
Sbjct 118 GATCGCC-------T---G-AA-TAAT-CA-A--CC-ATTTTTC-CATAGATGGCAACGT 159
Query 192 TTAACAGCTTCCGTAAAGCTGTCGGAGCAATCAAAGATTCCACTACCGTAAGTATCGCCA 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TTAACAGCTTCCGTAAAGCTGTCGGAGCAATCAAAGATTCCACTACCGTAAGTATCGCCA 219
Query 252 AGGTCAACAGCGAATTCAAGGATTTGGATGTTGCGATCGT-AAAGGCCACAAATCACGTA 310
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 220 AGGTCAACAGCGAATTCAAGGATTTGGATGTTGCGATCGTTAAAG-CCACAAATCACGTA 278
Query 311 GAATCTGCTCCCAAAGAACGTCACATTCGTAGAATATTCTCGGCGACATCGGTAGTGCAA 370
|||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 279 GAATCTTCTCCCAAAGAACGTCATATTCGTAAAATATTCTCGGCGACATCTGTAGTGCAA 338
Query 371 CCACGAGCAGATGTTGCTTACTGCATTCACGCATTAGCCAAAAGATTGTCAAAAACTCGC 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 CCACGAGCAGATGTTGCTTACTGCATTCACGCATTAGCCAAAAGATTGTCAAAAACTCGC 398
Query 431 AATTGGGTTGTTGCGATCAAGGTGTTAATAGTCATTCATAGAACACTAAGAGAAGGTGAT 490
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AATTGGGTTGTCGCGATCAAGGTGTTAATAGTCATTCATAGAACACTAAGAGAAGGTGAT 458
Query 491 CCAACATTTAGAGAAGAGCTTCTCAATTACTCACATAGAGGACATATACTTCGAATATCA 550
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 459 CCAACATTCAGAGAAGAGCTTCTCAATTACTCGCATAGAGGACATATACTGCGAATATCG 518
Query 551 AACTTCAAAGACGATACAAGTCCTCTTGCTTGGGATTGCTCTGCGTGGATTAGGACATAC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AACTTCAAAGACGATACAAGTCCTCTTGCTTGGGATTGCTCTGCGTGGATTAGGACATAC 578
Query 611 GCGCTTTTCCTCGAGGAGCGGCTTGAATGCTATCGGGTTTTGAAGTATGACATAGAAGCA 670
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GCGCTTTTTCTCGAGGAGCGGCTTGAATGCTATCGGGTTTTGAAGTATGACATAGAAGCA 638
Query 671 GAACGTTTACCAAAAGGTTCAGGTGCATCTTCAAAGAACGTAGATTTCAATGCTTCTCAA 730
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 639 GAACGTTTACCAAAAGGTTCAGGTGCATCTTCAAAGAACGGGGATTTCAATGCTTCTCAA 698
Query 731 ACGTATAGAACAAGGATGCTCTCCGATGAAGAATTGCTAGAGCAGTTACCTGCTTTGCAA 790
||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||
Sbjct 699 ACGTATAGAACAAGGATGCTCTCTGATGAAGAACTGCTAGAACAGTTACCTGCATTGCAA 758
Query 791 CAGCTGCTTTATAGGCTTATTGGTTGTCAGCCTGAAGGATCAGCATATAGCAACTACCTA 850
||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 759 CAGCTGCTTTACAGGCTTATTGGTTGTCAGCCTGAAGGAGCAGCCTATAGCAACTACCTA 818
Query 851 ATCCAGTATGCTCTTGCATTGGTGCTTAAAGAAAGCTTCAAAATCTACTGTGCCATTAAT 910
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 819 ATCCAATACGCTCTTGCATTGGTGCTTAAAGAAAGCTTCAAAATATACTGTGCCATTAAT 878
Query 911 GATGGAATCATTAATCTTGTAGACATGTTCTTTGAGATGTCAAGACATGATGCAGTTAAA 970
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 879 GATGGAATCATTAATCTTGTAGACATGTTTTTTGAGATGTCAAGACATGATGCAGTTAAA 938
Query 971 GCTCTAAATATATATAAACGAGCTGGCCAACAGGCTGAAAATTTGGCTGACTTTTATGAA 1030
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 939 GCTTTAAATATATATAAACGAGCTGGCCAACAGGCTGAAAATCTGGCTGACTTTTACGAG 998
Query 1031 TACTGCAAAGGTCTAGAGCTAGCGAGAAACTTTCAGTTCCCAACCTTAAGACAGCCTCCT 1090
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 999 TACTGCAAAGGTCTAGAGCTAGCGAGAAACTTTCAGTTCCCGACCTTGAGACAGCCTCCT 1058
Query 1091 CCTTCTTTCCTAGCAACAATGGAAGACTACATTAAAGAAGCGCCTCAAAGTGGTTCTGTA 1150
|||||||| || | |||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1059 CCTTCTTTTCTTGTAACAATGGAAGATTATATTAAAGAAGCACCTCAAAGTGGTTCTGTA 1118
Query 1151 CAGAAAAAGCTGGAGTATCAGgaaaaagaggaagaagaacaagaagaagaagaagcagaa 1210
|||||||||||||||||||| ||||||||||| |||||| || |||||||||||| ||
Sbjct 1119 CAGAAAAAGCTGGAGTATCAAGAAAAAGAGGAGGAAGAAGAACAAGAAGAAGAAG-AG-- 1175
Query 1211 CACTCTG-TCCAGCCTGAAGAACCTGCAGAAGCCGATAATCAAAAGGAAAACAGCGAAGG 1269
||||||| || |||| |||||| | ||||||||| |||||||| || |||| ||||||
Sbjct 1176 CACTCTGCTC-AGCCAGAAGAAGATAAAGAAGCCGAAAATCAAAATGAGAACACCGAAGG 1234
Query 1270 AGACCAGCCGCTTATCgaagaagaggaagaagac--caa-gaaaaaatagaagaggaaga 1326
|||||||||||||||||||||||| |||||||| ||| |||||||||||||| |||||
Sbjct 1235 AGACCAGCCGCTTATCGAAGAAGAAGAAGAAGAGGACAACGAAAAAATAGAAGAAGAAGA 1294
Query 1327 TGCTAAACCTTCTTTCCTGATAGACACTGATGATCTGCTGGGACTAAATGAGATCAACCC 1386
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1295 TGCTAAACCTTCTTTCCTGATAGACACTGATGATCTGCTGGGCCTGAATGAGATAAACCC 1354
Query 1387 TAAAGCCGCAGAGATAGAGGACCGAAATGCATTGGCTCTTGCAATATATCCACCAGGTCA 1446
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1355 TAAAGCCGCAGAGATAGAGGACCGCAATGCATTGGCTCTTGCAATATATCCACCAGGTCA 1414
Query 1447 TGAAGCTCCAGGACC-ATCAAACATTTTAAGTTTAATAGAAACCGGTGGATCCGGCTGGG 1505
|||||||||||| || |||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 1415 TGAAGCTCCAGG-CCTATCAAACAGTTTAAGCTTAATAGAAACCGGTGGATCCGGTTGGG 1473
Query 1506 AATTGGCACTGGTCACTCCTCAGaacaacaacaacaacaaTAATCCTCGCCCTGCGCCTA 1565
|| |||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 1474 AACTGGCACTGGTCACTCCTCAGAACAACAACAACAACAAT---CCTCGCCCTGTGCCAA 1530
Query 1566 ACACCAAACTTGCAGGAGGATTTGACAATCTATTGCTTGACAGTCTGTACGAGGATGATT 1625
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1531 ACACTAAACTTGCAGGAGGATTTGACAATCTATTACTTGACAGTCTGTACGAGGATGATT 1590
Query 1626 CAGCTAGGAGACAGATCCAGCTAACCAATGCGGGCTATGGACATGGTGGCATAGACACAA 1685
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 CAGCTAGGAGACAGATCCAACTAACCAATGCGGGCTATGGACATGGTGGCATAGACACAA 1650
Query 1686 CAGCAGCACCGCCAAACCCATTCCAAATGCAACAAGATCCTTTTGCAATGTCCAACAACA 1745
||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1651 CAGCACCACCACCAAACCCATTCGAGATGCAACAAGATCCTTTTGCAATGTCCAACAACA 1710
Query 1746 TTGCTCCTCCCACTAATGTTCAAATGGCAATGCAACAACAACAGCAACAACAGATGACGA 1805
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1711 TTGCTCCTCCAACTAACGTTCAAATGGCAATGCAACAACAACAGCAACAACAGATGATGA 1770
Query 1806 TGATGCATCAGAGTCCCTACAATTACACtcatcctcatgattatcatcaaaatcatcatc 1865
|||||||||||||||||||||||| ||||||| || ||| || ||||||||
Sbjct 1771 TGATGCATCAGAGTCCCTACAATTTTACTCATC---AT------CAT-AA--TCATCATC 1818
Query 1866 atcatcaGTTCTCAGCCGGTCCTTCTCCTTCTAATCCTTTTGGAGACGCTTTCCTTGCCC 1925
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1819 ATCATCAGTTCTCAGCAGGTCCTTCTCCTTCTAATCCTTTTGGAGACCCTTTCCTTGCCC 1878
Query 1926 TCCCACCTCCGCCAGGATCAGCTGGTCCGCAACAAAACAACCATCATCATATGCTCCTCT 1985
| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1879 TTCCACCTCCCCCAGGCTCAGCTGGTCCGCAACAAAATAACCATCATCATATGCTCCTAT 1938
Query 1986 AGAGTTACAACATCTCAGATAATAATCTCTCTTTCTCTTGGTTACCttt--tttttttGG 2043
|||||||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||
Sbjct 1939 AGAGTTACAACATCTCAGTTAATAATCTCTCCTTCTCTTGGTTACTTTTCCTTTTTTTGG 1998
Query 2044 TTT-AGT-TT------GATTATATATAT-T---CAGAGTGTTATTCTTTCATTCTTTCTA 2091
|| ||| || |||||||||||| | ||| |||||||||||||||||||||||
Sbjct 1999 ATTCAGTGTTTAATTTGATTATATATATATATTCAGGGTGTTATTCTTTCATTCTTTCTA 2058
Query 2092 CTAGACAACTCTACTCACTGATGATTTCTTAGCCATTTT 2130
|||||||||||||||||||||||||||||||||||||||
Sbjct 2059 CTAGACAACTCTACTCACTGATGATTTCTTAGCCATTTT 2097
> Ahg917426 jgi|Araly1|917426|Al_scaffold_0008_2177
Length=1773
Score = 1382 bits (748), Expect = 0.0
Identities = 1507/1854 (81%), Gaps = 129/1854 (7%)
Strand=Plus/Plus
Query 182 ATGGCAACGTTTAAC-AGCTTCCGTAAAGCTGT-CGGAGCAATCAAAGATTCCACTACCG 239
|||| |||| || || ||||| || ||||| || |||||| ||||||| | || ||||
Sbjct 1 ATGGGAACG-TTCACGAGCTTTCGAAAAGC-GTATGGAGCACTCAAAGACACAACCACCG 58
Query 240 TAAGTATCGCCAAGGTCAACAGCGAATTCAAGGATTTGGATGTTGCGATCG-TAAAGGCC 298
| || |||| |||||||||||||||||||||||||| ||| ||||||||| |||| ||
Sbjct 59 TTGGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTTAAA-GCA 117
Query 299 ACAAATCACGTAGAATCTGCTCCCAAAGAACGTCACATTCGTAGAATATTCTCGGCGACA 358
|| ||||| || |||||| | || ||||||||||| |||||| ||||||||||||||||
Sbjct 118 ACCAATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACA 177
Query 359 TCGGTAGTGCAACCACGAGCAGATGTTGCTTACTGCATTCACGCATTAGCCAAAAGATTG 418
|| ||| | ||||||||||||||||| ||||| |||||||| |||||| | ||||||||
Sbjct 178 TCTGTAATACAACCACGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTA 237
Query 419 TCAAAAACTCGCAATTGGGTTGTTGCGATCAAGGTGTTAATAGTCATTCATAGAACACTA 478
|| ||||||||||||||||||||||| || |||||||||||||| ||||| |||||| ||
Sbjct 238 TCGAAAACTCGCAATTGGGTTGTTGCAATGAAGGTGTTAATAGTAATTCACAGAACATTA 297
Query 479 AGAGAAGGTGATCCAACATTTAGAGAAGAGCTTCTCAATTACTCACATAGAGGACATATA 538
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 298 AGAGAAGGTGATCCAACATTCAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATA 357
Query 539 CTTC-GAATATCAAACTTCAAAGACGATACAAGTCCTCTTGCTTGGGATTGCTCTGCGTG 597
| || ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 358 C-TCAGAATATCTAACTTCAAAGACGATACAAGTCCTCTTGCGTGGGATTGTTCTGCTTG 416
Query 598 GATTAGGACATACGCGCT-TTTCCTCGAGGAGCGGCTTGAATGCTATCGGGTTTTGAAGT 656
| |||| ||||||||||| ||| || || |||||||||||||| ||||||||||| ||||
Sbjct 417 GGTTAGAACATACGCGCTCTTT-CTTGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGT 475
Query 657 ATGACATAGAAGCAGAACGTTTACCAAAAGGTTCAGGTGCATCTTCAAAGAACGTAGATT 716
||||||| || ||||| |||||||| ||| | | |||| || || |
Sbjct 476 ATGACATCGAGGCAGAGCGTTTACC-AAA-----A---G---CTTC--AG---GT-G--- 514
Query 717 TCAATGCTTCTCAA-ACGTATAGAACAAGGATGCTCTCCGATGAAGAAT-TGCTAGAGCA 774
| | ||||| ||| ||| |||||||||||||| | || | ||||| || | |||| ||
Sbjct 515 -C-A-GCTTC-CAAGACGCATAGAACAAGGATGTTGTCTGGTGAAG-ATCTATTAGAACA 569
Query 775 GTTACCTGCTTTGCAACAGCTGCTTTATAGGCTTATTGGTTGTCAGCCTGAAGGATCAGC 834
||||| || || |||||||| ||||| ||||||| || ||||||||||||||| ||||
Sbjct 570 ATTACCCGCGTTACAACAGCTTCTTTACCGGCTTATCGGATGTCAGCCTGAAGGAGCAGC 629
Query 835 ATATAGCAACTACCTAATCCAGTATGCTCTTGCATTGGTGCTTAAAGAAAGCTTCAAAAT 894
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 630 TTATAGCAACTATCTAATCCAATACGCTCTTGCATTGGTGCTTAAAGAAAGCTTCAAAAT 689
Query 895 CTACTGTGCCATTAATGATGGAATCATTAATCTTGTAGACATGTTCTTTGAGATGTCAAG 954
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CTATTGTGCCATCAATGATGGAATCATTAATCTTGTAGACATGTTCTTTGAGATGTCAAG 749
Query 955 ACATGATGCAGTTAAAGCTCTAAATATATATAAACGAGCTGGCCAACAGGCTGAAAATTT 1014
|||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||| |
Sbjct 750 ACATGATGCAGTTAAAGCTCTAAACGTATACAAACGGGCTGGTCAACAGGCTGAAAATCT 809
Query 1015 GGCTGACTTTTATGAATACTGCAAAGGTCTAGAGCTAGCGAGAAACTTTCAGTTCCCAAC 1074
|||||| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 810 GGCTGAGTTTTATGATTACTGCAAAGGGCTAGAGCTAGCTAGGAACTTTCAGTTCCCAAC 869
Query 1075 CTTAAGACAGCCTCCTCCTTC-TTTCCTAGCAACAATGGAAGACTACATTAAAGAAGCGC 1133
||||||||||||||||||||| |||| | || ||||||||||| ||||||||||||||||
Sbjct 870 CTTAAGACAGCCTCCTCCTTCGTTTC-TCGCGACAATGGAAGAGTACATTAAAGAAGCGC 928
Query 1134 CTCAAAGTGGTTCTGTACAGAAAAAGCTGGAGTATCAGgaaaaagaggaagaagaacaag 1193
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 929 CTCAGAGTGGTTCTGTACAGAAAAAACTGGAGTATCAGGAAAAAGAGGAAGAAGAA---G 985
Query 1194 aagaagaagaagcagaaCACTCTGTCCAGCCTGAAGAACCTGCAGAAGCCGATAATCAAA 1253
||||| ||||| || | || | || ||||||||||||||||| || || ||||
Sbjct 986 AAGAACAAGAA-CA-A-CA----G-CC----TGAAGAACCTGCAGAAGAAGAAAACCAAA 1033
Query 1254 AGGAAAACAGCGAAGGA-GACCAGCCGCTTATCgaagaagaggaagaaga-cc--aagaa 1309
| ||||||| |||| | || |||||| |||||||||||||||||||||| || ||||
Sbjct 1034 ACGAAAACACCGAAA-ATGATCAGCCGGTTATCGAAGAAGAGGAAGAAGAGCCTGAAGAG 1092
Query 1310 -a-aaatagaagaggaagaTGCTAAACCTTCTTTCC-T-GATAGACACTGATGATCTG-C 1364
| ||| | |||||||||| ||||||||||| || | ||||||||||||||| || |
Sbjct 1093 GAGAAA-A-AAGAGGAAGAAGCTAAACCTTCA--CCATTGATAGACACTGATGA-CTTAC 1147
Query 1365 TGGGACTAAATGAGATCAACCCTAAAGCCGCAGAGATAGAGGACCGA-AATGCATTGGCT 1423
||||| | |||| || || || |||||||||||||| ||| | | || ||||| |||
Sbjct 1148 TGGGATTGCATGAAATAAATCCAAAAGCCGCAGAGATTGAGCAAA-ACAACGCATTCGCT 1206
Query 1424 CTTGCAATATATCCACCAGGTCATGAAGCTCCAGGACCATCAAACATTTTAAGTTTAATA 1483
|| || |||||||||||||| |||||| || |||| ||||| || | | |||| ||||||
Sbjct 1207 CTCGCGATATATCCACCAGGACATGAAACTTCAGGCCCATCTAATAGTCTAAGCTTAATA 1266
Query 1484 GAAACCGGTGGATCCGGCTGGGAA-TTGGCACTGGTCACTCCTCAGaacaacaacaacaa 1542
||| | || ||| || |||||| ||| |||| ||||| || |||||||||||||||||
Sbjct 1267 GAAGCTGGAGGAAGTGGTTGGGAACTTG-CACTAGTCACACCACAGAACAACAACAACAA 1325
Query 1543 caaTAA------TCCTCG-CCCTGCGCCTAACACCAAA-CTTGCAGGAGGATTTGACAAT 1594
|||||| |||||| ||| || || || |||| || | |||||||| ||||||
Sbjct 1326 CAATAACAACAATCCTCGTCCC-GCAA-TAGCAACAAAACTCGGTGGAGGATTCGACAAT 1383
Query 1595 CTAT-TGCTTGACAGTCTGTACGAGGATGATTCAGCTAGGAGACAGATCCAGCTAACCAA 1653
|| | | || |||||||| ||||| || ||| |||| || ||||||||||| |||| ||
Sbjct 1384 CT-TCTACTAGACAGTCTCTACGAAGACGATACAGCAAGAAGACAGATCCAATTAACAAA 1442
Query 1654 TGCGGGCTATGGACATGGTGGCA----TAGACAC--A-A-C-AGC---AGCAC-CGCCAA 1700
|| || || ||| ||| | || || || | | | | ||| | || | ||||
Sbjct 1443 CGCCGGTTACGGATTTGGAGCCACCGCTATACCCGGAGAACCAGCCTTATCAAAC-CCAA 1501
Query 1701 ACCCATTCCAAATGCAACAAGATCCTTTTGCAATGTCCAACAACATTGCTCCTCCCACTA 1760
|||||||| ||||||||||||||||| |||||||| |||||||| ||||| || || |
Sbjct 1502 ACCCATTCGGGATGCAACAAGATCCTTTCGCAATGTCAAACAACATGGCTCCACCAACCA 1561
Query 1761 ATGTTCAAATGGCAATGCAACAACAACAGCAACAACAGATGACGATGA-TGCATCAGA-G 1818
| || ||||||||||||||||||||||| || ||||| ||||| | ||| || |
Sbjct 1562 ACGTCCAAATGGCAATGCAACAACAACA--AAT----GATGATGATGAATA-ATC-GAAG 1613
Query 1819 TCCCTACAATTACA-Ctcatcctcatgattatcatcaaaatcatca-t-catcatcaGTT 1875
||| || || ||| || || ||| ||||||||| |||||| | | ||| || |
Sbjct 1614 TCCATATAACAACAACT-AT--TCACC-TTATCATCA---TCATCAGTTC-TCACCAAAT 1665
Query 1876 C-T-CAGCCGGTCCTTCTCCTTCTAATCCTTTTGGAGACGCTTTCCTTGCCCTCCCACCT 1933
| | || | || | ||||| ||||||||||| ||| ||||||||||||||||| ||
Sbjct 1666 CCTTCAACT--TCAT-CTCCT---AATCCTTTTGGTGACCCTTTCCTTGCCCTCCCAGCT 1719
Query 1934 CCGCCAGGATCAGCTGGTCCGCAACAAAACAACCATCATCATATGCTCCTCTAG 1987
|| || ||| ||| || ||||||| ||| ||| |||||||||| ||||||
Sbjct 1720 CCTCCTTCATCTGCTACTCAGCAACAACACAGTCATAATCATATGCTTCTCTAG 1773
> Ahg887320 jgi|Araly1|887320|Al_scaffold_0161_2
Length=1071
Score = 579 bits (313), Expect = 4e-164
Identities = 461/532 (87%), Gaps = 12/532 (2%)
Strand=Plus/Plus
Query 182 ATGGCAACGTTTAAC-AGCTTCCGTAAAG-CTGTCGGAGCAATCAAAGATTCCACTACCG 239
|||| ||||||| || ||||| || |||| || | |||||| |||||||| | || ||||
Sbjct 1 ATGGGAACGTTT-ACGAGCTTTCGAAAAGCCTAT-GGAGCACTCAAAGATACAACCACCG 58
Query 240 TAAGTATCGCCAAGGTCAACAGCGAATTCAAGGATTTGGATGTTGCGATCGT-AAAGGCC 298
| || |||| |||||||||||||||||||||||||| ||| |||||||||| ||| ||
Sbjct 59 TTGGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAA-GCA 117
Query 299 ACAAATCACGTAGAATCTGCTCCCAAAGAACGTCACATTCGTAGAATATTCTCGGCGACA 358
|| ||||| || |||||| | || ||||||||||| |||||| ||||||||||||||||
Sbjct 118 ACGAATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACA 177
Query 359 TCGGTAG-TGCAACCACGAGCAGATGTTGCTTACTGCATTCACGCATTAGCCAAAAGATT 417
|| || | | |||||| |||||||||| ||||| |||||||| |||||| | ||||||||
Sbjct 178 TCTGT-GATACAACCAAGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATT 236
Query 418 GTCAAAAACTCGCAATTGGGTTGTTGCGATCAAGGTGTTAATAGTCATTCATAGAACACT 477
|| ||||||||||||||||||||||| || |||||||| ||||| ||||| |||||| |
Sbjct 237 ATCGAAAACTCGCAATTGGGTTGTTGCAATGAAGGTGTTGATAGTAATTCACAGAACATT 296
Query 478 AAGAGAAGGTGATCCAACATTTAGAGAAGAGCTTCTCAATTACTCACATAGAGGACATAT 537
||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct 297 AAGAGAAGGTGATCCAACATTCAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATAT 356
Query 538 ACTTC-GAATATCAAACTTCAAAGACGATACAAGTCCTCTTGCTTGGGATTGCTCTGCGT 596
|| || ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 357 AC-TCAGAATATCTAACTTCAAAGACGATACAAGTCCTCTTGCGTGGGATTGTTCTGCTT 415
Query 597 GGATTAGGACATACGCGCT-TTTCCTCGAGGAGCGGCTTGAATGCTATCGGGTTTTGAAG 655
|| |||| ||||||||||| |||| | || |||||||||||||| ||||||||||| |||
Sbjct 416 GGGTTAGAACATACGCGCTCTTTCTT-GAAGAGCGGCTTGAATGTTATCGGGTTTTAAAG 474
Query 656 TATGACATAGAAGCAGAACGTTTACCAAAAGGTTCAGGTGCATCTTCAAAGA 707
|||||||| || ||||| ||||||||||||| |||||||||| |||| ||||
Sbjct 475 TATGACATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCCAAGA 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80446597440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5