BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25950.1

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492222 jgi|Araly1|492222|fgenesh2_kg.7__1655__AT4G25950.1         606    3e-173


> Ahg492222 jgi|Araly1|492222|fgenesh2_kg.7__1655__AT4G25950.1
Length=385

 Score =  606 bits (328),  Expect = 3e-173
 Identities = 367/386 (95%), Gaps = 2/386 (1%)
 Strand=Plus/Plus

Query  1    GAACATAAGCCATGGATTCTTTAAGAGGCCAAGGTGGGATTCAGATGCTTTTAACTGCTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAACATAAGCCATGGATTCTTTAAGAGGCCAAGGTGGGATTCAGATGCTTTTAACTGCTG  60

Query  61   AACAAGAAGCCGGACGGATTGTTTCAGCTGCGAGGACCGCAAAACTAGCAAGAATGAAGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AACAAGAAGCCGGACGGATTGTTTCAGCTGCGAGGACCGCAAAACTAGCAAGAATGAAGC  120

Query  121  AAGCGAAAGATGAGGCTGAGAAGGAGATGGAAGAATACA-GATCCCGATTAGAAGAAGAG  179
            ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct  121  AAGCGAAAGATGAGGCTGAGAAGGAGATGGAAGAATACAAG-TCTCGATTAGAAGAAGAG  179

Query  180  TATCAAACTCAAGTTTCTGGGACGGATCAAGAAGCAGATGCAAAACGTTTAGATGATGAG  239
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  180  TATCAAACTCAAGTTTCTGGGACGGATCAAGAAGCAGCTGCAAAACGTTTAGATGATGAG  239

Query  240  ACAGATGTCAGGATTACGAACCTTAAGGAATCTAGTTCAAAGGTCTCCAAGGATATTGTC  299
            ||||| | |||||||| ||||||||||||||||||||||||||||||||| || ||||| 
Sbjct  240  ACAGACGCCAGGATTAAGAACCTTAAGGAATCTAGTTCAAAGGTCTCCAAAGAGATTGTA  299

Query  300  AAGATGCTCATCAAGTATGTCACCACTACTGCAGCATGATTCTCACTACACCGCCCCCAT  359
            |||||||||||||| ||||| |||||||||| ||||||||||||||||||||  || |||
Sbjct  300  AAGATGCTCATCAAATATGTTACCACTACTGGAGCATGATTCTCACTACACCAACCTCAT  359

Query  360  CGTATCTTATTCTCCTGATAATAAAA  385
              |||||||||||||| |||||||||
Sbjct  360  AATATCTTATTCTCCTCATAATAAAA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14346501464


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5