BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25970.1
Length=2330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492220 jgi|Araly1|492220|fgenesh2_kg.7__1653__AT4G25970.1 3779 0.0
Ahg917424 jgi|Araly1|917424|Al_scaffold_0008_2175 1589 0.0
Ahg359372 jgi|Araly1|359372|fgenesh1_pg.C_scaffold_161000001 942 0.0
> Ahg492220 jgi|Araly1|492220|fgenesh2_kg.7__1653__AT4G25970.1
Length=2345
Score = 3779 bits (2046), Expect = 0.0
Identities = 2255/2352 (96%), Gaps = 29/2352 (1%)
Strand=Plus/Plus
Query 1 TCGGTGACACAGATATTTTGCTTCCAAATA-AAACGAGTCCGGTCACTGGCGCTCACTGA 59
|||||||||||| ||||||| |||||| ||| || ||||||||||| ||||||||||
Sbjct 1 TCGGTGACACAGGTATTTTG----CAAATAGAAA-GACTCCGGTCACTGCCGCTCACTGA 55
Query 60 CTTCGTCTTCCTCCATCTCCG-A--TCC-AT----TGGTTTAACAAGCGCGTGAGGGCCA 111
|||| |||||||||||||||| | ||| || || ||| ||||||||||||| | |
Sbjct 56 CTTCTTCTTCCTCCATCTCCGAATTTCCGATCCACAGGATTACCAAGCGCGTGAGGTCTA 115
Query 112 GATAGACCGAGAATCATGGGAAACGGAAACTCAACGGAGACGAAAGAGTCGCGCCGATCA 171
|| || |||||| |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 116 GAGAGTTCGAGAACCATGGGAAACGGAAACTCCACGGAGGCGAAAGAGTCGCGCCGATCA 175
Query 172 AAGATGCGTA-AGAAGATTCAAAACTTTCGCAGCCGCCGCCGTCTTAGTCGTCCAGGATC 230
|||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 176 AAGATGCG-ACAGAAGATTCAGAACTTTCGCAGCCGCCGCCGTCTTAGTCGTCCAGGATC 234
Query 231 CGGAAGCGTCTCTGGATTGGCTAGTCAGAGATCTGTGAGCGCAGATGATTTCGCCGGCAT 290
|||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 235 CGGAAGCGTCTCCGGATTGGTTAGTCAGAGATCTGTTAGCGCAGATGATTTCGCCGGCAT 294
Query 291 TGCTCTTCTCACTCTTATCGGCGCGGAGATGAAGTTCAAGGACAAGTGGCTCGCCTGTGT 350
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TGCTCTTCTCACTCTCATCGGCGCGGAGATGAAGTTCAAGGACAAGTGGCTCGCCTGTGT 354
Query 351 TTCCTTCGGGGAACAAACTTTCCGTTCGGAAATTTCAGATTCCACAGAGAAGCCGATTTG 410
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 355 TTCCTTCGGGGAACAAACTTTCCGTTCGCAGATTTCAGATTCCACAGAGAAGCCGATTTG 414
Query 411 GAACTCGGAAAAGAAGCTTCTCCTGGAGAAAAATGGACCAAGTCTGGCTAGAATCTCTGT 470
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAATTCGGAAAAGAAGCTTCTCCTGGAGAAAAATGGACCAAGTCTGGCTAGAATCTCTGT 474
Query 471 ATTTGAGACCAATAGACTCTTGAAGAACAATATCGTTGGTTATTGTGAGCTTGATCTACT 530
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATTTGAGACCAATAGACTCTCGAAGAACAATATCGTTGGTTATTGTGAGCTTGATCTACT 534
Query 531 TGATTTCGTAGTACAGGAACCTGACTCTACTTGCAAGTCATTTGACCTGTTAGACCCGGC 590
||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct 535 TGAATTCGTAGTGCAGGAACCTGACTCTGCTTGCAAATCATTTGACCTGTTAGACCCTGC 594
Query 591 CTCATCTAACGTTGTTGGCAGCATGTTTGTTTCATGCTCCGTTGAGGATCCTGTTGAAAC 650
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 595 CTCATCTAATGTTGTTGGCAGCATGTTTGTCTCATGCTCCGTTGAGGATCCTGTTGAAAC 654
Query 651 CGAGACATGTTTCGCGAAGCGTATTTTGTCCATAGTGGATTATGACGAAGATGGAAAACT 710
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 655 CGAGACATGTTTCGCAAAGCGTATTTTGTCCATAGTGGACTATGACGAAGATGGAAAACT 714
Query 711 CTCATTCTCAGAGTTCTCTGATCTGATGAATGCTTTTGGGAATGTAGTGGCTGCTAACAA 770
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 715 CTCATTCTCAGAGTTCTCTGATCTGGTGAATGCTTTTGGGAATATAGTGGCTGCTAACAA 774
Query 771 GAAAGAGGAGTTGTTCAAAGCCGCTGACCTGAATGGGGATGGTGTTGTTACAATTGATGA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GAAAGAGGAGTTGTTCAAAGCCGCTGACCTGAATGGGGATGGTGTTGTTACAATTGATGA 834
Query 831 GTTGGCTGCACTTCTTGCCGTTCAACAGGAACAGGAGCCAATTATAAATAGTTGTCCGGT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTTGGCTGCACTTCTTGCCGTTCAACAGGAACAGGAGCCAATTATAAATAGTTGTCCGGT 894
Query 891 TTGCGGTGAGGCTCTTCAACTTGACAAGCTCAATGCAATGATCCATATGACTCTCTGTTT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTGCGGTGAGGCTCTTCAACTTGACAAGCTCAATGCAATGATCCATATGACTCTCTGTTT 954
Query 951 TGACGAAGGAACTGGTAATCAAA---TGACCGGAGGGTTCTTGACTGATAGGCAGGCTTC 1007
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 955 TGACGAAGGAACTGGTAATCAAACGATGACCGGAGGGTTCTTGACTGATAGGCAGGCTTC 1014
Query 1008 ATATGGATGGATGTTCAAACTAAGTGAATGGACTCATCTATCAACTTATGATGTTGGTTT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ATATGGATGGATGTTCAAACTAAGTGAATGGACTCATCTATCAACTTATGATGTTGGTTT 1074
Query 1068 GAATACTGGTTCAAGTGCTTCACATATTGTGGTGATTGATAGGAAGACTAAGAGGCTCGT 1127
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1075 GAATACTGGTTCAAGTGCTTCACATATTGTGGTGATTGATCGGAAGACTAAGAGGCTCGT 1134
Query 1128 GGAAGAGTTGATTGATTCAAAGATTGTTATGTCTATGAGAGCTATTTACCAGTCAAAAAT 1187
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1135 GGAAGAGTTGATTGATTCAAAGATTGTTATGTCGATGAGAGCTATTTACCAGTCAAAAAT 1194
Query 1188 AGGACTCCGGCTTATGGACCAAGGAGCAAAAGAGATTTTGCAGAACCTTTCTGAGAAACA 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CGGACTCCGGCTTATGGACCAAGGAGCAAAAGAGATTTTGCAGAACCTTTCTGAGAAACA 1254
Query 1248 GGGGaaaaaaaTGAACTCAGTTGAATCTGCCCAAAATATTCCCAGCTTTCTCGAGTTTTT 1307
|||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1255 GGGGAAGAAGATGAACACAGTTGAATCTGCCCAAAATATACCCAGCTTTCTCGAGTTTTT 1314
Query 1308 CAAGGATCAAATAAACATGGCCGAAGTCAAGTATCCTCTGGACCATTTTAAGACGTTCAA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CAAGGATCAAATAAACATGGCCGAAGTCAAGTATCCTCTGGACCATTTTAAGACGTTCAA 1374
Query 1368 TGAATTCTTCGTACGGGAGTTAAAGCCTGGTGCAAGACCAATTGCGTGCATGGATCAGGA 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TGAATTCTTCGTACGGGAGTTAAAGCCTGGTGCAAGACCAATTGCGTGCATGGATCAGGA 1434
Query 1428 TGATGTTGCTGTATCTGCTGCTGATTGTCGATTAATGGCATTTCAATCGGTTGATGATAG 1487
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1435 TGATGTTGCTGTATCTGCTGCTGATTGTCGATTAATGGCGTTTCAATCGGTGGATGATAG 1494
Query 1488 CACACGGTTCTGGATCAAGGGCCGTAAGTTTTCAATCAAAGGCCTCCTTGGAAATGATGT 1547
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1495 CACGCGGTTCTGGATCAAGGGCCGTAAGTTTTCAATCAAAGGTCTCCTTGGGAATGATGT 1554
Query 1548 GCAGTCGGATGCTTTCCTTGATGGATCTTTGGTGATATTCCGATTGGCGCCACAGGACTA 1607
|||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1555 GCAGTCAGATGCTTTTATTGATGGATCTTTGGTGATATTCCGATTGGCTCCACAGGACTA 1614
Query 1608 TCATCGTTTTCATTCTCCTGTCTCTGGTGTCATTGAAAAGTTTGTCAATGTTTCTGGAAG 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TCATCGTTTTCATTCTCCTGTCTCTGGTGTCATTGAAAAGTTTGTCAATGTTTCTGGAAG 1674
Query 1668 CTTATATACGGTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAA 1727
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CTTATATACAGTTAATCCGATAGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAA 1734
Query 1728 TAAACGGACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGGTCGCATTTGTTGCGAT 1787
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TAAACGGACAATCGTAATTATATCAACAGCAGAGTTTGGAAAGGTCGCATTTGTTGCGAT 1794
Query 1788 TGGAGCAACAATGGTTGGTAGTATCAGCTTTGTTAGGCAAGAGGGAGACCATGTGAAGAA 1847
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1795 TGGAGCGACAATGGTTGGTAGTATCACCTTTGTTAGGCAAGAGGGAGACCATGTGAAGAA 1854
Query 1848 AGGGGACGAGCTTGGTTACTTTTCATTTGGTGGAAGCACAGTTATATGCGTCTTTGAAAA 1907
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1855 AGGGGACGAGCTTGGTTACTTTTCATTTGGTGGAAGCACAGTTATAAGCGTCTTTGAAAA 1914
Query 1908 GGACTCGATTAAGATTGATGAGGATCTCTTAGCTAACAGTGCTAGGTCCTTGGAGACATT 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GGACTCGATTAAGATTGATGAGGATCTCTTAGCTAACAGTGCTAGGTCCTTGGAGACATT 1974
Query 1968 AGTTACTGTTGGAATGCAACTTGGTGTCTCCTTTCCAAAGCTGGAAAACTGTGT-ACTTG 2026
||||||||||||||||||||| |||||||||||||||||| | ||||||||||| | |||
Sbjct 1975 AGTTACTGTTGGAATGCAACTAGGTGTCTCCTTTCCAAAGATAGAAAACTGTGTTA-TTG 2033
Query 2027 AGCCCTGAACTGCTTCAAACTATGTGAGTTAGTACGAAACGACAGATGATTTTCTATGGT 2086
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2034 AACCCTGAACTGCTTCAAACTATGTGAGTTAGTACGAAACGACAGATGATTTTCTTTGGT 2093
Query 2087 TTGGTTTG-----ATTTGATTTAGTTTTCACTTTTCATCAAGAAAGAACTCAATTCCTCT 2141
|||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2094 TTGGTTTGGTTTGATTTGATTTAGTTTTCTCTTTTTATCAAGAAAGAACTCAATTCCTCT 2153
Query 2142 CTGTTTAATACACAATGACTTTGCTCTGTATATATAAACACCAGTA-T--GTCCCGGGCA 2198
|||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 2154 CTGTTTGATACACAATGACTTTGCTCTGTATATATAAACACCAGTAATATGTCCTGGGCA 2213
Query 2199 GTGATACTTGTTAATGTTTACGGTATTTCGCtttttttGTTGAGTGTTTTTCCTAGGTGA 2258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2214 GTGATACTTGTTAATGTTTACGGTATTTCGCTTTTTTTGTTGAGTGTTTTTGCTAGGTGA 2273
Query 2259 CAATTTTACATGCAAATAAGGTTAAACACATGTCTGTCTCTATTCCGGTCTTAATGAAGA 2318
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2274 CAATTTTACATGCAAATAAGGTTAAACACATGTCTGTCTCTATTCCTGTCTTAATGAAGA 2333
Query 2319 GACTTTGTCTGT 2330
||||||||||||
Sbjct 2334 GACTTTGTCTGT 2345
> Ahg917424 jgi|Araly1|917424|Al_scaffold_0008_2175
Length=1863
Score = 1589 bits (860), Expect = 0.0
Identities = 1334/1557 (86%), Gaps = 55/1557 (4%)
Strand=Plus/Plus
Query 477 GACCAATAGACTCTTGAA-GAACAATATCGTTGGTTATTGTGAGCTTGATCTACTT-GAT 534
||| ||||| ||| | || |||||| ||| | |||||||||||||||||| || || |||
Sbjct 294 GACAAATAGGCTC-TCAAGGAACAAAATCATCGGTTATTGTGAGCTTGATATA-TTCGAT 351
Query 535 TTCGTAGTACAGGAACCTGACTCTACTTGCAAGTCATTTGACCTGTTAGA-CCCGGCCTC 593
|| | ||| ||||||||||| || | || |||||||||||| ||||||| ||| | ||
Sbjct 352 TTTGCAGTGCAGGAACCTGAGTCGGCGTGTAAGTCATTTGACTTGTTAGATCCC-ACATC 410
Query 594 ATCTAACGTTGTTGGCAGCATGTTT-GTTTCATGCTCCGTTGAGGATCCTGTTGAAACCG 652
||| || |||||||||| ||| ||| |||| ||| | |||||||||||||||||||||
Sbjct 411 ATCCAATGTTGTTGGCACCAT-TTTCCTTTCTTGCGCTATTGAGGATCCTGTTGAAACCG 469
Query 653 AGA--CATGTTTCGCGAAGCGTATTTTGTCCATA---GT---GGATTATGACGAAGATGG 704
||| | |||| || |||||||| ||||||||| || ||| || | ||||||||
Sbjct 470 AGAGGC-GGTTT-GCAAAGCGTATCTTGTCCATAGTGGTGCAGGACTACAATGAAGATGG 527
Query 705 AAAACTCTCATTCTCAGAGTTCTCTGATCTGATGAATGCTTTTGGGAATGTAGTGGCTGC 764
| |||| || || || |||||||||||||| || || |||||||| ||| ||||||||||
Sbjct 528 ACAACTGTCGTTTTCGGAGTTCTCTGATCTAATAAAGGCTTTTGGAAATTTAGTGGCTGC 587
Query 765 TAACAAGAAAGAGGAGTTGTTCAAAGCCGCTGACCTGAATGGGGATGGTGTTGTTACAAT 824
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 588 TAACAAGAAAGAAGAGTTGTTCAAAGCTGCTGACCTGAATGGGGACGGTGTTGTGACGAT 647
Query 825 TGATGAGTTGGCTGCACTTCTTGC-CGTTCAACAGGAACAGGAGCCAATTATAAATAGTT 883
||| |||||||||| |||||||| | ||||||| |||||||||||||| ||||||| ||
Sbjct 648 TGACGAGTTGGCTGTGCTTCTTGCTC-TTCAACAAGAACAGGAGCCAATAATAAATAATT 706
Query 884 GTCCGGTTTGCGGTGAGGCTCTTCA--ACT-TGACAAGCTCAATGCAATGATCCATATGA 940
||||||| || |||||||||||||| || |||||||||||| || ||||| |||||||
Sbjct 707 GTCCGGTGTGTGGTGAGGCTCTTCAGCTCTCTGACAAGCTCAACGCGATGATTCATATGA 766
Query 941 CTCTCTGTTTTGACGAAGGAACTGGTAATCAA---ATGACCGGAGGGTTCTTGACTGATA 997
|||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 767 CTCTTTGTTTTGACGAAGGAACGGGTAATCAAGTGATGACCGGAGGGTTTTTGACTGATA 826
Query 998 GGCAGGCTTCATATGGATGGATGTTCAAACTAAGTGAATGGACTCATCT-ATCAACTTAT 1056
| || ||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 827 GACAAGCTTCTTATGGATGGATGTTCAAACTAAGTGAATGGACACA-CTTATCAACTTAT 885
Query 1057 GATGTTGGTTTGAATACTGGTTCAAGTGCTTCACATATTGTGGTGATTGATAGGAAGACT 1116
|| |||||||||||||||||||||||||| ||| |||||||||| ||||| |||||| |
Sbjct 886 GACGTTGGTTTGAATACTGGTTCAAGTGCCTCATATATTGTGGTAATTGACCGGAAGAGT 945
Query 1117 AAGAGGCTCGTGGAAGAGTTGATTGATTCAAAGATTGTTATGTCTATGAGAGCTATTTAC 1176
||||| ||||||||||||||||| || |||||||||||| | || ||||||||||||||
Sbjct 946 AAGAGACTCGTGGAAGAGTTGATAGACTCAAAGATTGTTCTCTCCATGAGAGCTATTTAT 1005
Query 1177 CAGTCAAAAATAGGACTCCGGCTTATGGACCAAGGAGCAAAAGAGATTTTGCAGA-ACCT 1235
||||||||||| ||||| || |||||||| ||||| ||||| |||||| |||||| || |
Sbjct 1006 CAGTCAAAAATTGGACTTCGACTTATGGATCAAGGGGCAAAGGAGATTCTGCAGAGAC-T 1064
Query 1236 TTCTGAGAAACAGGGGaaaaaaaTGAACTCAGTTGAATCTGCCCAAAATATTCC-CAGCT 1294
||||||||| |||||||| ||||||| ||| |||||||| || ||||| || || | |||
Sbjct 1065 TTCTGAGAAGCAGGGGAAGAAAATGAGCTCTGTTGAATCCGCACAAAAAATACCAC-GCT 1123
Query 1295 TTCTCGAGTT-TTTCAAGGATCAAATAAACATGGCCGAAGTCAAGTATCCTCTGGACCAT 1353
|||||||||| ||| |||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1124 TTCTCGAGTTCTTT-AAGGATCAAATAAACATGGCTGAAGTCAAGTATCCTCTGCAGCAT 1182
Query 1354 TTTAAGACGTTCAATGAATTCTTCGTACGGGAGTT-AAAGCCTGGTGCAAGACCAATTGC 1412
||||||||||||||||| |||||| | |||||||| ||| ||||||||||||||||||||
Sbjct 1183 TTTAAGACGTTCAATGAGTTCTTCATCCGGGAGTTGAAA-CCTGGTGCAAGACCAATTGC 1241
Query 1413 GTGCATGGATCAGG--ATGATGTTGCTGTATCTGCTGCTGATTGTCGATTAATGGCATTT 1470
|||||| | ||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1242 TTGCATGAA--AGGCGATGATGTTGCCGTATGTGCTGCTGATTGTCGATTAATGGCATTT 1299
Query 1471 CAATCGGTTGATGATAGCACACGGTTCTGGATCAAGGGCCGTAAGTTTTCAATCAA-AGG 1529
|| ||||| || ||||| || || ||||||||||||||| ||||||||||| || |||
Sbjct 1300 CAGTCGGTGGAGGATAGTACCCGTTTCTGGATCAAGGGCAAAAAGTTTTCAAT-AAGAGG 1358
Query 1530 CCTCCTTGG-AA-A-TGA-TGTGCAGT-CGGATGCTTTCCTTGATGGATCTTTGGTGATA 1584
||| ||||| || | | | |||| | | | |||| ||||||||||||||||||||||||
Sbjct 1359 CCTTCTTGGGAAGAGT-ACTGTGAA-TACAAATGCCTTCCTTGATGGATCTTTGGTGATA 1416
Query 1585 TTCCGATTGGCGCCACAGGACTATCATCGTTTTCAT-TCTCCTGTCTCTGGTGTCATTGA 1643
|||||| | || |||||||| |||||||| |||||| || ||||||||||| ||||||||
Sbjct 1417 TTCCGACTAGCACCACAGGATTATCATCGGTTTCATGTC-CCTGTCTCTGGAGTCATTGA 1475
Query 1644 AAAGTTTGTCAATGTTTCTGGAAGCTTATATACGGTTAATCCGATTGCTGTCAATAGCAA 1703
||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1476 AAAGTTTGTGGATCTTTCTGGAAGCTTATATACAGTTAATCCGATTGCGGTCAATAGCAA 1535
Query 1704 GTACTGTAATGTGTTCACTGAGAATAAACGGACCATCGTAATTATATCAACAGCAGAGTT 1763
|||||||||||| ||||| || |||||||| ||| | | |||||||||||||||||| ||
Sbjct 1536 GTACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATT 1595
Query 1764 TGGAAAGGTCGCATTTGTTGCGATTGGAGCAACAATGGTTGGTAGTATCAGCTTTGTTAG 1823
||||||||| || |||||||| || || || |||||||||||||| || | |||| ||
Sbjct 1596 TGGAAAGGTTGCTTTTGTTGCAATCGGTGCGACAATGGTTGGTAGCATAAATTTTGAGAG 1655
Query 1824 GCAAG-AGGGAGACCATGTGAAGAAAGGGGACGAGCTTGGTTACTTTTCATTTGGTGGAA 1882
||| | ||||| ||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1656 A-AAGGAAGGAGAACATGTGAAGAAAGGGGATGAACTTGGTTATTTTTCATTTGGTGGAA 1714
Query 1883 GCACAGTTATATGCGTCTTTGAAAAGGACTCGATTAAGATTGATGAGGATCTCTTAGCTA 1942
||||||||||||| |||||||||||||||||||| ||| |||||||||||||| | ||
Sbjct 1715 GCACAGTTATATGTGTCTTTGAAAAGGACTCGATCCGGATCGATGAGGATCTCTTGGTTA 1774
Query 1943 ACAGTGCTAGGTCCTTGGAGACATTAGTTACTGTTGGAATGCAACTT-GGTGTCTCC 1998
|||||| ||||||||| ||||||||||| | ||||||||||||| || |||||||||
Sbjct 1775 ACAGTGGTAGGTCCTTAGAGACATTAGTGAGTGTTGGAATGCAA-TTAGGTGTCTCC 1830
> Ahg359372 jgi|Araly1|359372|fgenesh1_pg.C_scaffold_161000001
Length=1503
Score = 942 bits (510), Expect = 0.0
Identities = 793/926 (86%), Gaps = 34/926 (4%)
Strand=Plus/Plus
Query 1096 GTGGTGATTGATAGGAAGACTAAGAGGCTCGTGGAAGAGTTGATTGATTCAAAGATTGTT 1155
||||| ||||| |||||| |||||| ||||||||||||||||| || ||||||||||||
Sbjct 556 GTGGTAATTGACCGGAAGAGTAAGAGACTCGTGGAAGAGTTGATAGACTCAAAGATTGTT 615
Query 1156 ATGTCTATGAGAGCTATTTACCAGTCAAAAATAGGACTCCGGCTTATGGACCAAGGAGCA 1215
| || |||||||||||||| ||||||||||| ||||| || |||||||| ||||| |||
Sbjct 616 CTCTCCATGAGAGCTATTTATCAGTCAAAAATTGGACTTCGACTTATGGATCAAGGGGCA 675
Query 1216 AAAGAGATTTTGCAGA-ACCTTTCTGAGAAACAGGGGaaaaaaaTGAACTCAGTTGAATC 1274
|| |||||| |||||| | ||||||||||| |||||||| ||||||| ||| ||||||||
Sbjct 676 AAGGAGATTCTGCAGAGA-CTTTCTGAGAAGCAGGGGAAGAAAATGAGCTCTGTTGAATC 734
Query 1275 TGCCCAAAATATTCCCA-GCTTTCTCGAGTT-TTT----C----AAGGATCAAATAAACA 1324
|| ||||| | | ||| ||||||||||||| ||| | || |||||||||||||
Sbjct 735 CGCACAAAA-AATACCACGCTTTCTCGAGTTCTTTAAGGCATGGAAAGATCAAATAAACA 793
Query 1325 TGGCCGAAGTCAAGTATCCTCTGGACCATTTTAAGACGTTCAATGAATTCTTCGTACGGG 1384
|||| |||||||||||||||||| | |||||||||||||||||||| |||||| | ||||
Sbjct 794 TGGCTGAAGTCAAGTATCCTCTGCAGCATTTTAAGACGTTCAATGAGTTCTTCATCCGGG 853
Query 1385 AGTT-AAAGCCTGGTGCAAGACCAATTGCGTGCATGGATCA-G-GATGATGTTGCTGTAT 1441
|||| ||| |||||||||||||||||||| ||||| || | | ||||||||||| ||||
Sbjct 854 AGTTGAAA-CCTGGTGCAAGACCAATTGCTTGCAT-GA-AAGGCGATGATGTTGCCGTAT 910
Query 1442 CTGCTGCTGATTGTCGATTAATGGCATTTCAATCGGTTGATGATAGCACACGGTTCTGGA 1501
|||||||||||||||||||||||||||||| ||||| || ||||| || || |||||||
Sbjct 911 GTGCTGCTGATTGTCGATTAATGGCATTTCAGTCGGTGGAGGATAGTACCCGTTTCTGGA 970
Query 1502 TCAAGGGCCGTAAGTTTTCAATCAA-AGGCCTCCTT-GGAA-ATG-A-TGTGCAGT-CGG 1555
|||||||| ||||||||||| || |||||| ||| |||| | | | |||| | | |
Sbjct 971 TCAAGGGCAAAAAGTTTTCAAT-AAGAGGCCTTCTTGGGAAGA-GTACTGTG-AATACAA 1027
Query 1556 ATGCTTTCCTTGATGGATCTTTGGTGATATTCCGATTGGCGCCACAGGACTATCATCGTT 1615
|||| |||||||||||||||||||||||||||||| | || |||||||| |||||||| |
Sbjct 1028 ATGCCTTCCTTGATGGATCTTTGGTGATATTCCGACTAGCACCACAGGATTATCATCGGT 1087
Query 1616 TTCAT-TCTCCTGTCTCTGGTGTCATTGAAAAGTTTGTCAATGTTTCTGGAAGCTTATAT 1674
||||| || ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1088 TTCATGTC-CCTGTCTCTGGAGTCATTGAAAAGTTTGTGGATCTTTCTGGAAGCTTATAT 1146
Query 1675 ACGGTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAATAAACGG 1734
|| |||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1147 ACAGTTAATCCGATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGA 1206
Query 1735 ACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGGTCGCATTTGTTGCGATTGGAGCA 1794
||| | | |||||||||||||||||| ||||||||||| || |||||||| || || ||
Sbjct 1207 ACCGTTGCAATTATATCAACAGCAGAATTTGGAAAGGTTGCTTTTGTTGCAATCGGTGCG 1266
Query 1795 ACAATGGTTGGTAGTATCAGCTTTGTTAGGCAAG-AGGGAGACCATGTGAAGAAAGGGGA 1853
|||||||||||||| || | |||| || ||| | ||||| |||||||||||||||||
Sbjct 1267 ACAATGGTTGGTAGCATAAATTTTGAGAGA-AAGGAAGGAGAACATGTGAAGAAAGGGGA 1325
Query 1854 CGAGCTTGGTTACTTTTCATTTGGTGGAAGCACAGTTATATGCGTCTTTGAAAAGGACTC 1913
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1326 TGAACTTGGTTATTTTTCATTTGGTGGAAGCACAGTTATATGTGTCTTTGAAAAGGACTC 1385
Query 1914 GATTAAGATTGATGAGGATCTCTTAGCTAACAGTGCTAGGTCCTTGGAGACATTAGTTAC 1973
||| ||| |||||||||||||| | |||||||| ||||||||| ||||||||||| |
Sbjct 1386 GATCCGGATCGATGAGGATCTCTTGGTTAACAGTGGTAGGTCCTTAGAGACATTAGTGAG 1445
Query 1974 TGTTGGAATGCAACTT-GGTGTCTCC 1998
||||||||||||| || |||||||||
Sbjct 1446 TGTTGGAATGCAA-TTAGGTGTCTCC 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87759924480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5