BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25980.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329078 jgi|Araly1|329078|fgenesh1_pm.C_scaffold_7001305 1748 0.0
> Ahg329078 jgi|Araly1|329078|fgenesh1_pm.C_scaffold_7001305
Length=1113
Score = 1748 bits (946), Expect = 0.0
Identities = 1062/1118 (95%), Gaps = 7/1118 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTCTCTATTCCGGTCTTAATGAAGAGACTTTGTCTGTATAActctctctctctc 60
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGTCTGTCTCTATTCCTGTCTTAATGAAGAGACTTTGTCTGTATAA--CTCTCTCTCT- 57
Query 61 tttctttttcacctctttccctcaccctctctggctctctcattctctGTTGAGTTGAAC 120
| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 58 TATCTTTTTCACCTCTTTCCCTCACCCTCTTTCGCTCTCTCGTTCTCTGTTGAGTTGAAC 117
Query 121 TTACTAAAAGCACAAATGGTTTGGGCAAATGCTAAGATGAGGCTAGCTTTGTCTCTTGTT 180
|||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||| ||
Sbjct 118 TTACTAAAAGCACAAATGGTGTGGGCAAAGGCTAGGATGAGACTAGCTTTGTCTCTTATT 177
Query 181 ACGGTTTTCTTCGGCATCTCTCTTGCTAATCTTGAAGTCGGATTTTACTCCAATACATGC 240
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 178 ACGGTTTTCCTCGGCATCTCTCTTGCTGATCTTGAAGTTGGATTTTACTCCAATACATGT 237
Query 241 CCTCAAGCCGAGTCAATCGTTAAGAGGGTTGTCTCAGGG-GCTGCTCTTTCCGACCCTAA 299
|||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||
Sbjct 238 CCTCAAGCCGAGTCAATCGTTAGGAGAGTTGTCT-TGGGAGCTGCTCTTTCCGACCCTAA 296
Query 300 CCTCCCAGCCATACTTCTACGGCTCCATTTCCATGATTGCTTTGTTGAGGGATGTGATGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCTCCCAGCCATACTTCTACGGCTCCATTTCCATGATTGCTTTGTTGAGGGATGTGATGG 356
Query 360 CTCGATCCTCGTGAACAACGGAGCAATCTCTGAAAAGAATGCATTTGGACATGAAGGCGT 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 CTCGATCCTCGTGAACAACGGAGCAATCTCTGAAAAGAATGCATTTGGGCATGAAGGCGT 416
Query 420 TAGAGGATTTGAGATAGTAGAAGCCGTCAAAGCCGAGCTTGAAGCTGCATGCCCCGGTGT 479
||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 417 TAGAGGATTTGAGATTGTAGAAGCTGCCAAAGCCGAGCTTGAAGCTGCATGCCCCGGTGT 476
Query 480 TGTCTCCTGCTCAGACATTGTTGCCTTGGCTGCACGTGATGCCATATCTTTGGCGAATGG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 TGTCTCCTGCTCAGACATTGTTGCCTTGGCTGCACGTGATGCCATATCTTTGGCAAATGG 536
Query 540 ACCGGCGTATGAGGTGCCAACTGGGCGGAGAGATGGTCGGGTTTCGAACATGTCATTGGC 599
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 537 ACCGGCATATGAGGTGCCAACTGGGCGGAGAGATGGTCGTGTTTCGAACATATCATTGGC 596
Query 600 TAAGGACATGCCGGAGGTGAGTGACTCGATTGAGATACTAAAGGCTAAGTTCATGCAGAA 659
||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 597 TAAGGACATGCCGGAGGTGAGTGACTCGATTCAGATACTAAAGGATAAGTTTATGCAGAA 656
Query 660 AGGACTCAACGCCAAAGACCTCGTGCTTCTCAGTGCTGCTCACACTATCGGAACAACGGC 719
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 657 GGGACTCAACGCCAAAGACCTCGTGCTTCTCAGTGCTGCTCACACTATTGGAACAACGGC 716
Query 720 CTGCTTCTTCATGTCCAAACGGCTCTATGATTTCTTACCTGGTGGCCAACCTGACCCGAC 779
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 717 CTGCTTCTTCATGTCCAAACGGCTCTACGATTTCTTACCCGGTGGTCAACCTGATCCGAC 776
Query 780 TATCAATCCAACATTCCTACCCGAATTAACCACTCAGTGCCCACAAAATGGTGACATAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TATCAATCCAACATTCCTACCCGAATTAACCACTCAGTGCCCACAAAATGGTGACATAAA 836
Query 840 CGTCCGTTTACCAATTGACCGGTTCAGCGAACGGCTATTCGACAAGCAGATTCTGCAAAA 899
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 837 CGTCCGGTTACCAATTGACCGGTTCAGTGAACGGCTATTCGACAAGCAGATTCTGCACAA 896
Query 900 CATAAAGGATGGTTTTGCTGTGCTTCAGACCGACGCAGGTCTTTACGAGGATGTAACGAC 959
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 897 CATAAAGGATGGTTTCGCTGTGCTTCAGACCGACGCAGGTCTTTACGAGGATGTTATAAC 956
Query 960 -CAGACAGGTCGTGGATTCCTATCTTGGGATGCTAAATCCATTCTTTGGGCCAACATTCG 1018
| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 957 TC-GACAGGTCGTGGATTCCTATCTTGGGATGCTAAATCCATTCTTTGGGCCAACGTTTG 1015
Query 1019 AGTCTGATTTCGTTAAGGCGATCGTAAAGATGGGGAAGATTGGTGTGAAGACTGGTTTCA 1078
|||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGTCCGATTTCGTAAAGGCAATAGTAAAGATGGGGAAGATTGGTGTGAAGACTGGTTTCA 1075
Query 1079 AAGGGGAGATTCGACGGGTTTGCTCGGCCTTCAATTGA 1116
| ||||| ||||||||||||||||||||||||||||||
Sbjct 1076 AGGGGGAAATTCGACGGGTTTGCTCGGCCTTCAATTGA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5