BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25980.1 Length=1116 Score E Sequences producing significant alignments: (Bits) Value Ahg329078 jgi|Araly1|329078|fgenesh1_pm.C_scaffold_7001305 1748 0.0 > Ahg329078 jgi|Araly1|329078|fgenesh1_pm.C_scaffold_7001305 Length=1113 Score = 1748 bits (946), Expect = 0.0 Identities = 1062/1118 (95%), Gaps = 7/1118 (1%) Strand=Plus/Plus Query 1 ATGTCTGTCTCTATTCCGGTCTTAATGAAGAGACTTTGTCTGTATAActctctctctctc 60 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1 ATGTCTGTCTCTATTCCTGTCTTAATGAAGAGACTTTGTCTGTATAA--CTCTCTCTCT- 57 Query 61 tttctttttcacctctttccctcaccctctctggctctctcattctctGTTGAGTTGAAC 120 | |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| Sbjct 58 TATCTTTTTCACCTCTTTCCCTCACCCTCTTTCGCTCTCTCGTTCTCTGTTGAGTTGAAC 117 Query 121 TTACTAAAAGCACAAATGGTTTGGGCAAATGCTAAGATGAGGCTAGCTTTGTCTCTTGTT 180 |||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||| || Sbjct 118 TTACTAAAAGCACAAATGGTGTGGGCAAAGGCTAGGATGAGACTAGCTTTGTCTCTTATT 177 Query 181 ACGGTTTTCTTCGGCATCTCTCTTGCTAATCTTGAAGTCGGATTTTACTCCAATACATGC 240 ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 178 ACGGTTTTCCTCGGCATCTCTCTTGCTGATCTTGAAGTTGGATTTTACTCCAATACATGT 237 Query 241 CCTCAAGCCGAGTCAATCGTTAAGAGGGTTGTCTCAGGG-GCTGCTCTTTCCGACCCTAA 299 |||||||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||| Sbjct 238 CCTCAAGCCGAGTCAATCGTTAGGAGAGTTGTCT-TGGGAGCTGCTCTTTCCGACCCTAA 296 Query 300 CCTCCCAGCCATACTTCTACGGCTCCATTTCCATGATTGCTTTGTTGAGGGATGTGATGG 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 CCTCCCAGCCATACTTCTACGGCTCCATTTCCATGATTGCTTTGTTGAGGGATGTGATGG 356 Query 360 CTCGATCCTCGTGAACAACGGAGCAATCTCTGAAAAGAATGCATTTGGACATGAAGGCGT 419 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 357 CTCGATCCTCGTGAACAACGGAGCAATCTCTGAAAAGAATGCATTTGGGCATGAAGGCGT 416 Query 420 TAGAGGATTTGAGATAGTAGAAGCCGTCAAAGCCGAGCTTGAAGCTGCATGCCCCGGTGT 479 ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| Sbjct 417 TAGAGGATTTGAGATTGTAGAAGCTGCCAAAGCCGAGCTTGAAGCTGCATGCCCCGGTGT 476 Query 480 TGTCTCCTGCTCAGACATTGTTGCCTTGGCTGCACGTGATGCCATATCTTTGGCGAATGG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 477 TGTCTCCTGCTCAGACATTGTTGCCTTGGCTGCACGTGATGCCATATCTTTGGCAAATGG 536 Query 540 ACCGGCGTATGAGGTGCCAACTGGGCGGAGAGATGGTCGGGTTTCGAACATGTCATTGGC 599 |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 537 ACCGGCATATGAGGTGCCAACTGGGCGGAGAGATGGTCGTGTTTCGAACATATCATTGGC 596 Query 600 TAAGGACATGCCGGAGGTGAGTGACTCGATTGAGATACTAAAGGCTAAGTTCATGCAGAA 659 ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| Sbjct 597 TAAGGACATGCCGGAGGTGAGTGACTCGATTCAGATACTAAAGGATAAGTTTATGCAGAA 656 Query 660 AGGACTCAACGCCAAAGACCTCGTGCTTCTCAGTGCTGCTCACACTATCGGAACAACGGC 719 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 657 GGGACTCAACGCCAAAGACCTCGTGCTTCTCAGTGCTGCTCACACTATTGGAACAACGGC 716 Query 720 CTGCTTCTTCATGTCCAAACGGCTCTATGATTTCTTACCTGGTGGCCAACCTGACCCGAC 779 ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 717 CTGCTTCTTCATGTCCAAACGGCTCTACGATTTCTTACCCGGTGGTCAACCTGATCCGAC 776 Query 780 TATCAATCCAACATTCCTACCCGAATTAACCACTCAGTGCCCACAAAATGGTGACATAAA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TATCAATCCAACATTCCTACCCGAATTAACCACTCAGTGCCCACAAAATGGTGACATAAA 836 Query 840 CGTCCGTTTACCAATTGACCGGTTCAGCGAACGGCTATTCGACAAGCAGATTCTGCAAAA 899 |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 837 CGTCCGGTTACCAATTGACCGGTTCAGTGAACGGCTATTCGACAAGCAGATTCTGCACAA 896 Query 900 CATAAAGGATGGTTTTGCTGTGCTTCAGACCGACGCAGGTCTTTACGAGGATGTAACGAC 959 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || Sbjct 897 CATAAAGGATGGTTTCGCTGTGCTTCAGACCGACGCAGGTCTTTACGAGGATGTTATAAC 956 Query 960 -CAGACAGGTCGTGGATTCCTATCTTGGGATGCTAAATCCATTCTTTGGGCCAACATTCG 1018 | |||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 957 TC-GACAGGTCGTGGATTCCTATCTTGGGATGCTAAATCCATTCTTTGGGCCAACGTTTG 1015 Query 1019 AGTCTGATTTCGTTAAGGCGATCGTAAAGATGGGGAAGATTGGTGTGAAGACTGGTTTCA 1078 |||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1016 AGTCCGATTTCGTAAAGGCAATAGTAAAGATGGGGAAGATTGGTGTGAAGACTGGTTTCA 1075 Query 1079 AAGGGGAGATTCGACGGGTTTGCTCGGCCTTCAATTGA 1116 | ||||| |||||||||||||||||||||||||||||| Sbjct 1076 AGGGGGAAATTCGACGGGTTTGCTCGGCCTTCAATTGA 1113 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41592102447 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5