BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25990.2
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354188 jgi|Araly1|354188|fgenesh1_pg.C_scaffold_7001361 1434 0.0
> Ahg354188 jgi|Araly1|354188|fgenesh1_pg.C_scaffold_7001361
Length=1179
Score = 1434 bits (776), Expect = 0.0
Identities = 1011/1122 (90%), Gaps = 25/1122 (2%)
Strand=Plus/Plus
Query 13 GCCTATAGCTTCGAGTTGGAAATGATGAAATCGCCGCCGTCAAACAACACTCCTTCACCG 72
||||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 28 GCCTATAGCTTTGAGTTAGAAATGGTGAAATCGCCGCCGTCACACAACACTCCTTCACCG 87
Query 73 TCATCTACAATCTCTGAGACAAACTCTCCTCCGTTCTCAATCTCCACGAGAAGGCCACGA 132
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 88 TCATCTACAATCTCCGAGTCAAACTCTCCTCCGTTCTCAATCTCCACGAGAAGGCCACGA 147
Query 133 ACTCCACGGAAACGTCCCAACCAAACATACGACGAAGCTGCGGCTCTCCTCTCCACCGCT 192
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 148 ACTCCACGGAAACGTCCGAACCAAACATACGACGAAGCTGCGGCTCTTCTCTCCACCGCT 207
Query 193 TACCCTAAAATCTTCTCTTCCAAGAAGGCAAAAACTCAGATTTTCGGGACTAATAAATCT 252
| ||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||||||
Sbjct 208 TGCCCAAAAATCTTCTCTTCCAAGAAAACAAAAACTCAGATTTTCGGCAATAACAAATCT 267
Query 253 CCTCTCAGTGATTACGACGAAGCTTCTCAGTTGCTTCTTCCGTACGTATCCATCGAGGAG 312
||| | |||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 268 CCTTTAAGTGCTTACGACGAAGCTTCTCAGTTGCTTCTTCCGTACGCATCCGTCGAGGAG 327
Query 313 AACGAGTTTCTGTTCAATCCAACGATTCCAACGAAAACAGAACACTTCTTGGAGCAGAAG 372
||||| |||||||||||||| || |||||||||||| ||||||||||||| ||||| |||
Sbjct 328 AACGATTTTCTGTTCAATCCCACCATTCCAACGAAAGCAGAACACTTCTTAGAGCATAAG 387
Query 373 GAAGTCAGTTTTGATGACTTGGAGGTGAATGGGTTTGG-AGTTTTAGACGATTTCGACGC 431
|||||| |||||||||||| |||||||| | || |||| | |||| || |||||||||||
Sbjct 388 GAAGTCTGTTTTGATGACTCGGAGGTGATTAGGATTGGGA-TTTTCGAAGATTTCGACGC 446
Query 432 GGAATCGATTTTAGATGAAGAGATTGAAGAAGGAATTGATAGTTTTATGGGGAATATTGA 491
|||||||||||| |||||||||| ||||||||| || || ||||||||||||||||||||
Sbjct 447 GGAATCGATTTTGGATGAAGAGACTGAAGAAGGGATCGACAGTTTTATGGGGAATATTGA 506
Query 492 ATCTAATGACGGAGATAGAGAAAATTGTTACAGAGTCGGTCGATTAGAGGAAATTATGAA 551
||| || |||||||| | | |||| |||||||||||||||||||||||||
Sbjct 507 ATCGAACCACGGAGATTCTG------G---CAGAATCGGTCGATTAGAGGAAATTATGAA 557
Query 552 GAATGCTTGGAACGGAAGGTTTCGTTTAGGGCTTGGTTTGAGAAGTTCTCTCCGACAAAA 611
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||
Sbjct 558 GAATGCTTGGAACGGAAGATTTCGTTTAGGGCTAGGTTTGAGGAGTTCTCTCCGAGAAAA 617
Query 612 CAACGACGAGAACTGGTGGAAATTTCCTACTGTGGAGTTTGATCAGATTTCGCCGAGAAT 671
| | ||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 618 CGATGACGAGAACTGGTGGAAATTTCCCACCGTGGAATTTGATCAGATCTCGCCGAGAAT 677
Query 672 TCAGACCACCGCCGCCGCAGCAGCTGATGATGGTCAATCCAATGTCGTGGATAGTAGCAA 731
||||||||||||||||||| | ||||||||||||||||||||||| | ||||||| ||
Sbjct 678 TCAGACCACCGCCGCCGCA--A-CTGATGATGGTCAATCCAATGTCCTCGATAGTAATAA 734
Query 732 GATTAAAACGATTGTGACGGCGGAGGGAGACaagaaaaagaaaaagaagaagaagaaaaa 791
| |||||| || ||||| |||||||||| ||||| |||||| ||||||||||||||||
Sbjct 735 TAATAAAACCATCGTGACTGCGGAGGGAGGCAAGAGAAAGAAGAAGAAGAAGAAGAAAAC 794
Query 792 gaaagTGGCTCCGGCGGCGGCGGAATCAAAGAGCTCTGAAGTTACGGACTCGAATCCAAA 851
|||||||||||||||||||||||||| | || | ||| ||||||||| ||||||
Sbjct 795 GAAAGTGGCTCCGGCGGCGGCGGAATTA--GA------A-GTTCCGGACTCGAGTCCAAA 845
Query 852 GCTGGAGCAGAGAGTGAGTCCGTTGCTGAAGCTCGACTACGATGGGGTTTTAGAGGCTTG 911
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 846 GATGGAGCAGAGAGTGAGTCCGTTGTTGAAGCTCGACTACGATGGGGTTTTAGAGGCTTG 905
Query 912 GTCAGGTAAGGAGTCACCGTTCTCCGACGAGATTCTTGGTTCGGACGCTGACGGAGTCGA 971
||||||||||||||||||||||||| |||||||||| ||||| ||||| | |||||||||
Sbjct 906 GTCAGGTAAGGAGTCACCGTTCTCCCACGAGATTCTGGGTTCCGACGCCGCCGGAGTCGA 965
Query 972 TTTTCATGTAAGGTTGGGTGAGATAGATTTGTTCGGAGAAAGTGGTATGAGAGAAGCAAG 1031
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 966 TTTTCATGCAAGGTTGGGTGAGATAGATTTGTTCGGAGAAAGTGGAATGAGAGAAGCAAG 1025
Query 1032 TGTGTTAAGGTATAAAGAGAAGCGGAGGAATAGACTCTTCTCCAAGAA-AATCCGATATC 1090
|||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||
Sbjct 1026 TGTGTTAAGGTATAAAGAGAAGCGAAGGAACCGACTCTTCTCCAA-AAGAATCCGATATC 1084
Query 1091 AAGTTCGCAAGCTCAACGCCGACCAACGCCCGCGTATGAAGG 1132
|||||||||| |||||||| || |||||||||||||||||||
Sbjct 1085 AAGTTCGCAAACTCAACGCTGATCAACGCCCGCGTATGAAGG 1126
Score = 99.0 bits (53), Expect = 9e-20
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1175 AGGGACGATTTGTGAGAAGGCCCAACGCAAGGAATTTAAGTGGTCTACGATTATAA 1230
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1124 AGGGACGATTTGTGAGAAGGCCCAACGCAAGGAATTTAAGTGGGCTACGATTATAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5