BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26000.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492216 jgi|Araly1|492216|fgenesh2_kg.7__1649__AT4G26000.1 2603 0.0
> Ahg492216 jgi|Araly1|492216|fgenesh2_kg.7__1649__AT4G26000.1
Length=1793
Score = 2603 bits (1409), Expect = 0.0
Identities = 1677/1803 (93%), Gaps = 32/1803 (2%)
Strand=Plus/Plus
Query 16 TTTTGTGTTACCGGTTCAAATGGCCGCCGTCGCAGATTCCGTTGAGAACAACGGTTCCAT 75
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 TTTTGTGTTGCCGGTTCTAATGGCCGCCGTCGCAGATTCCGTTGAGAACAACGGTACTAT 60
Query 76 AAACCTCCCTGAGAATGAAAACCTTATACCGGCGGGATTCAGTGCCGCCGCATTGCTTGA 135
|||||| |||||||||||||||||||| ||||||||| |||||||| | |||||||||||
Sbjct 61 AAACCTGCCTGAGAATGAAAACCTTATGCCGGCGGGAATCAGTGCCACGGCATTGCTTGA 120
Query 136 CGAAAACTCTGGCGCTTTCCCTGAATTGAATCAGCCCGATAGCTTAGCTGCTGCTGAGAC 195
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 AGAAAACTCTGGCGCCTTCTCTGAATTGAATCAGCCCGATAGCTTAGCTGCTGCTGAAAC 180
Query 196 TACCTTCCCCGATACGAACGATTCCGCGGAGGAGAGGTGGCCAGGTTGGCCTGGTGATTG 255
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 181 TACCGCCCCCGATACGAACGATTTCGCGGCGGAGAGGTGGCCAGGTTGGCCTGGGGATTG 240
Query 256 CGTGTTTCGTATGATCGTTCCGGTGACTAAAGTCGGAGCTATTATTGGACGCAAAGGTGA 315
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 241 CGTGTTTCGTATGATCGTTCCGGTGACTAAAGTCGGAGCTATAATTGGACGCAAAGGAGA 300
Query 316 CTTTATAAAGAAGATGTGTGAGGAGACTCGTGCTCGTATCAAAGTCCTTGATGGTCCTGT 375
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTTATAAAGAAGATGTGTGAAGAGACTCGTGCTCGTATCAAAGTCCTTGATGGTCCTGT 360
Query 376 TAATACTCCCGATCGCATCGTGTTAATATCTGGTAAGGAAGAACCAGAGGCCTACATGTC 435
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 CAACACTCCCGATCGCATCGTGTTAATATCTGGTAAAGAAGAACCAGAGGCCTACATGTC 420
Query 436 ACCGGCAATGGACGCAGTGTTGAGGGTGTTTAGACGTGTTTCAGGGTTGCCTGATAATGA 495
|||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||||||
Sbjct 421 ACCGGCAATGGACGCAGTTTTAAGGGTGTTTAGACGAGTTTCAGGATTGCCAGATAATGA 480
Query 496 TGATGATGATGTTCAAAACGCTGGAAGTGTCTTCTCTTCAGTGCGTTTATTAGTTGCTTC 555
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 481 TGATGATGATGTTCAAAACGCTGGAAGTGCCTTCTGTTCAGTGCGTTTATTAGTTGCATC 540
Query 556 AACGCAGGCGATTAATTTGATTGGAAAACAAGGATCTTTGATTAAGTCTATAGTAGAGAA 615
|||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 541 CACGCAGGCCATAAATTTGATTGGAAAACAGGGATCTTTGATTAAGTCAATAGTAGAGAA 600
Query 616 CTCTGGTGCATCAGTTCGTATTTTATCAGAAGAGGAAACACCGTTTTATGCTGCACAGGA 675
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCTGGTGCATCCGTTCGTATTTTATCAGAAGAGGAAACACCGTTTTATGCTGCACAGGA 660
Query 676 TGAGAGGATAGTGGATTTGCAAGGGGAAGCTTTAAAGATTCTTAAAGCATTAGAAGCCAT 735
||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||
Sbjct 661 TGAGAGGATAGTGGATTTGCAGGGGGAAGCTCTAAAGATCCTCAAAGCATTAGAAGCCAT 720
Query 736 TGTTGGACACCTT-AGGAGATTTTTAGTTGACCATACTGTTGTCCCTCTCTTCGAGAAGC 794
||||||||| ||| |||| |||| |||| ||||||||||| |||||||||||||||||||
Sbjct 721 TGTTGGACA-CTTAAGGAAATTTCTAGTCGACCATACTGTGGTCCCTCTCTTCGAGAAGC 779
Query 795 AATATCTAGCTAGGGTCTCTCAAACTCGCCAGGAAGAACCGTTAGCTGAAAGCAAGTCAT 854
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 AATATCTAGCTAGAGTCTCTCAAACTCGTCAGGAAGAACCGTTAGCTGAAAGCAAGTCAT 839
Query 855 CTCTGCATACTATTTCGTCAAATCTAATGGAGCCTGATTTCTCCCTCTTAGCACGGAGGG 914
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 840 CTCTGCATACTATTTCGTCAAATGTAATCGAGCCTGATTTCTCCCTCTTAGCACGGAGGG 899
Query 915 AACCTTTGTTTCTGGAGCGCGATTCTCGGGTGGACTCACGTGTTCAGCCTTCGGGAGTTT 974
|||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 900 AACCTTTGTTTCTGGATCGCGATGCTCGGGTGGAATCACGTGTTCAGCCTACGGGAGTTT 959
Query 975 CTATCTACAGTCAGGATCCTGTACTGTCTGCCAGACACTCCCCAGGTCTTGCTCGGGTTT 1034
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 960 CTATCTACAGTCAGGATCCTGTACTGTCAGCCAGACACTCTCCAGGTCTTGCTCGGGTTT 1019
Query 1035 CTTCTGCTTTTGTGACACAGGTATCTCAAACGATGCAAATACCATTCTCCTATGCAGAGG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTTCTGCTTTTGTGACACAGGTATCTCAAACGATGCAAATACCATTCTCCTATGCAGAGG 1079
Query 1095 ATATTATTGGTGTAGAAGGAGCTAATATAGCCTATATCCGTCGAAGAAGCGGAGCTACCA 1154
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1080 ATATCATTGGTGTAGAAGGAGCTAATATAGCCTACATCCGTCGAAGAAGCGGAGCTACGA 1139
Query 1155 TAACCATTAAAGAGAGTCCGCATCCTGATCAAATCACAGTGGAAATCAAAGGCACAACTT 1214
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 TAACCATTAAAGAGAGTCCACATCCTGATCAAATCACAGTGGAAATCAAAGGCACATCTT 1199
Query 1215 CTCAAGTACAAACTGCTGAGCAACTAATTCAAGAGTTCATCATCAATCACAAGGAACCAG 1274
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 CTCAAGTACAAACTGCTGAGCAACTAATTCAAGAGTTCATCAGCAATCACAAGGAACCAG 1259
Query 1275 TTTCGGTATCAGGGGGATATGCCAGAATCGACTCTGGATATGTACCTGCATATCCTCCTC 1334
||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 1260 TTTCGGTTTCAGGGGGATATGCCAGAATTGACACTGGCTATGTACCTGCATATCCTCCTC 1319
Query 1335 AGCTAAGTAACCGTCAAGAGCCGCTCCCGAGCACCTACATGGGCACAGAGCCGGTGCAGT 1394
|||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||
Sbjct 1320 AGCTAAGTAACCGTCAAGAGCCGCTCTCGAACAGCTACATGGGCACAGAGACGGTGCAGT 1379
Query 1395 ACAGACCAACAGCATACTCTCAGCTGGGGGGTCCTTCTACCTACACACCGACCCTGACTG 1454
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||
Sbjct 1380 ACAGACCAACAGCATACTCTCAGCTGGGGGGTCCTTCGACCTACACGCCGTCCCTGAATG 1439
Query 1455 GGCAAACTTATGGTTCGGAATATAGACCAGCTTCTGATGTTGGTGGCTACAGCAGTTATA 1514
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1440 GGCAAACTTATGGTTCGGAATATAGACCAGCTTCTGATGTTGGTGGCTATAGCAGTTATA 1499
Query 1515 ATCTTTGAATTGGTTGCTGTG-TTTA--AGTTT-A-TTT----GCAGATTAATTTCTCTT 1565
|||||||||||| |||||||| |||| || || | ||| |||||||||||||| ||
Sbjct 1500 ATCTTTGAATTGTTTGCTGTGGTTTACGAGGTTCAGTTTATCTGCAGATTAATTTCTGTT 1559
Query 1566 TAGAGAAAGGCTCATTTATAATATAATAGAGAGGGAAAAGGAAC-AAGTTCTAGAGAGCC 1624
||||||||||||||||| || |||||||||||||||||| |||| |||| |||||||||
Sbjct 1560 TAGAGAAAGGCTCATTT-TATTATAATAGAGAGGGAAAAAGAACCAAGTAATAGAGAGCC 1618
Query 1625 AATGTAGTTGTTGGAATGTGTAATGTAAATCTAGGTGCCCtttttttttt-ttttt-tt- 1681
|||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 1619 AATGTAGTTG----AATGTGTAATGTAAATCTAGGTGCCTTTTTTTTTTTGTTTTTCTTT 1674
Query 1682 C-----ATACCTCGATATATGTCACACTACGTTTCTGGTCAAATAAGAACATGttttttc 1736
| ||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 1675 CTTTTCATATCTCGATATATGTTACACTACGTTTCTAGTCAAATAAGAAC-TGTTTTTTT 1733
Query 1737 tttctttttt-GTATGAATTTGTTT-ATCAGAAGTCAGA-ATGATTCAGTTTTAAGAAAT 1793
|||||||||| ||||| |||||||| | ||| || | | || ||||||||||||| |
Sbjct 1734 TTTCTTTTTTTGTATGGATTTGTTTGAG-AGATGTTTGTCA-GAATCAGTTTTAAGAA-T 1790
Query 1794 TTT 1796
|||
Sbjct 1791 TTT 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5