BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26000.1 Length=1819 Score E Sequences producing significant alignments: (Bits) Value Ahg492216 jgi|Araly1|492216|fgenesh2_kg.7__1649__AT4G26000.1 2603 0.0 > Ahg492216 jgi|Araly1|492216|fgenesh2_kg.7__1649__AT4G26000.1 Length=1793 Score = 2603 bits (1409), Expect = 0.0 Identities = 1677/1803 (93%), Gaps = 32/1803 (2%) Strand=Plus/Plus Query 16 TTTTGTGTTACCGGTTCAAATGGCCGCCGTCGCAGATTCCGTTGAGAACAACGGTTCCAT 75 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | || Sbjct 1 TTTTGTGTTGCCGGTTCTAATGGCCGCCGTCGCAGATTCCGTTGAGAACAACGGTACTAT 60 Query 76 AAACCTCCCTGAGAATGAAAACCTTATACCGGCGGGATTCAGTGCCGCCGCATTGCTTGA 135 |||||| |||||||||||||||||||| ||||||||| |||||||| | ||||||||||| Sbjct 61 AAACCTGCCTGAGAATGAAAACCTTATGCCGGCGGGAATCAGTGCCACGGCATTGCTTGA 120 Query 136 CGAAAACTCTGGCGCTTTCCCTGAATTGAATCAGCCCGATAGCTTAGCTGCTGCTGAGAC 195 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || Sbjct 121 AGAAAACTCTGGCGCCTTCTCTGAATTGAATCAGCCCGATAGCTTAGCTGCTGCTGAAAC 180 Query 196 TACCTTCCCCGATACGAACGATTCCGCGGAGGAGAGGTGGCCAGGTTGGCCTGGTGATTG 255 |||| ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| Sbjct 181 TACCGCCCCCGATACGAACGATTTCGCGGCGGAGAGGTGGCCAGGTTGGCCTGGGGATTG 240 Query 256 CGTGTTTCGTATGATCGTTCCGGTGACTAAAGTCGGAGCTATTATTGGACGCAAAGGTGA 315 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 241 CGTGTTTCGTATGATCGTTCCGGTGACTAAAGTCGGAGCTATAATTGGACGCAAAGGAGA 300 Query 316 CTTTATAAAGAAGATGTGTGAGGAGACTCGTGCTCGTATCAAAGTCCTTGATGGTCCTGT 375 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 301 CTTTATAAAGAAGATGTGTGAAGAGACTCGTGCTCGTATCAAAGTCCTTGATGGTCCTGT 360 Query 376 TAATACTCCCGATCGCATCGTGTTAATATCTGGTAAGGAAGAACCAGAGGCCTACATGTC 435 || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 361 CAACACTCCCGATCGCATCGTGTTAATATCTGGTAAAGAAGAACCAGAGGCCTACATGTC 420 Query 436 ACCGGCAATGGACGCAGTGTTGAGGGTGTTTAGACGTGTTTCAGGGTTGCCTGATAATGA 495 |||||||||||||||||| || |||||||||||||| |||||||| ||||| |||||||| Sbjct 421 ACCGGCAATGGACGCAGTTTTAAGGGTGTTTAGACGAGTTTCAGGATTGCCAGATAATGA 480 Query 496 TGATGATGATGTTCAAAACGCTGGAAGTGTCTTCTCTTCAGTGCGTTTATTAGTTGCTTC 555 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 481 TGATGATGATGTTCAAAACGCTGGAAGTGCCTTCTGTTCAGTGCGTTTATTAGTTGCATC 540 Query 556 AACGCAGGCGATTAATTTGATTGGAAAACAAGGATCTTTGATTAAGTCTATAGTAGAGAA 615 |||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 541 CACGCAGGCCATAAATTTGATTGGAAAACAGGGATCTTTGATTAAGTCAATAGTAGAGAA 600 Query 616 CTCTGGTGCATCAGTTCGTATTTTATCAGAAGAGGAAACACCGTTTTATGCTGCACAGGA 675 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTCTGGTGCATCCGTTCGTATTTTATCAGAAGAGGAAACACCGTTTTATGCTGCACAGGA 660 Query 676 TGAGAGGATAGTGGATTTGCAAGGGGAAGCTTTAAAGATTCTTAAAGCATTAGAAGCCAT 735 ||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||| Sbjct 661 TGAGAGGATAGTGGATTTGCAGGGGGAAGCTCTAAAGATCCTCAAAGCATTAGAAGCCAT 720 Query 736 TGTTGGACACCTT-AGGAGATTTTTAGTTGACCATACTGTTGTCCCTCTCTTCGAGAAGC 794 ||||||||| ||| |||| |||| |||| ||||||||||| ||||||||||||||||||| Sbjct 721 TGTTGGACA-CTTAAGGAAATTTCTAGTCGACCATACTGTGGTCCCTCTCTTCGAGAAGC 779 Query 795 AATATCTAGCTAGGGTCTCTCAAACTCGCCAGGAAGAACCGTTAGCTGAAAGCAAGTCAT 854 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 780 AATATCTAGCTAGAGTCTCTCAAACTCGTCAGGAAGAACCGTTAGCTGAAAGCAAGTCAT 839 Query 855 CTCTGCATACTATTTCGTCAAATCTAATGGAGCCTGATTTCTCCCTCTTAGCACGGAGGG 914 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 840 CTCTGCATACTATTTCGTCAAATGTAATCGAGCCTGATTTCTCCCTCTTAGCACGGAGGG 899 Query 915 AACCTTTGTTTCTGGAGCGCGATTCTCGGGTGGACTCACGTGTTCAGCCTTCGGGAGTTT 974 |||||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||| Sbjct 900 AACCTTTGTTTCTGGATCGCGATGCTCGGGTGGAATCACGTGTTCAGCCTACGGGAGTTT 959 Query 975 CTATCTACAGTCAGGATCCTGTACTGTCTGCCAGACACTCCCCAGGTCTTGCTCGGGTTT 1034 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 960 CTATCTACAGTCAGGATCCTGTACTGTCAGCCAGACACTCTCCAGGTCTTGCTCGGGTTT 1019 Query 1035 CTTCTGCTTTTGTGACACAGGTATCTCAAACGATGCAAATACCATTCTCCTATGCAGAGG 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 CTTCTGCTTTTGTGACACAGGTATCTCAAACGATGCAAATACCATTCTCCTATGCAGAGG 1079 Query 1095 ATATTATTGGTGTAGAAGGAGCTAATATAGCCTATATCCGTCGAAGAAGCGGAGCTACCA 1154 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1080 ATATCATTGGTGTAGAAGGAGCTAATATAGCCTACATCCGTCGAAGAAGCGGAGCTACGA 1139 Query 1155 TAACCATTAAAGAGAGTCCGCATCCTGATCAAATCACAGTGGAAATCAAAGGCACAACTT 1214 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 1140 TAACCATTAAAGAGAGTCCACATCCTGATCAAATCACAGTGGAAATCAAAGGCACATCTT 1199 Query 1215 CTCAAGTACAAACTGCTGAGCAACTAATTCAAGAGTTCATCATCAATCACAAGGAACCAG 1274 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1200 CTCAAGTACAAACTGCTGAGCAACTAATTCAAGAGTTCATCAGCAATCACAAGGAACCAG 1259 Query 1275 TTTCGGTATCAGGGGGATATGCCAGAATCGACTCTGGATATGTACCTGCATATCCTCCTC 1334 ||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||| Sbjct 1260 TTTCGGTTTCAGGGGGATATGCCAGAATTGACACTGGCTATGTACCTGCATATCCTCCTC 1319 Query 1335 AGCTAAGTAACCGTCAAGAGCCGCTCCCGAGCACCTACATGGGCACAGAGCCGGTGCAGT 1394 |||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||| Sbjct 1320 AGCTAAGTAACCGTCAAGAGCCGCTCTCGAACAGCTACATGGGCACAGAGACGGTGCAGT 1379 Query 1395 ACAGACCAACAGCATACTCTCAGCTGGGGGGTCCTTCTACCTACACACCGACCCTGACTG 1454 ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| || Sbjct 1380 ACAGACCAACAGCATACTCTCAGCTGGGGGGTCCTTCGACCTACACGCCGTCCCTGAATG 1439 Query 1455 GGCAAACTTATGGTTCGGAATATAGACCAGCTTCTGATGTTGGTGGCTACAGCAGTTATA 1514 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1440 GGCAAACTTATGGTTCGGAATATAGACCAGCTTCTGATGTTGGTGGCTATAGCAGTTATA 1499 Query 1515 ATCTTTGAATTGGTTGCTGTG-TTTA--AGTTT-A-TTT----GCAGATTAATTTCTCTT 1565 |||||||||||| |||||||| |||| || || | ||| |||||||||||||| || Sbjct 1500 ATCTTTGAATTGTTTGCTGTGGTTTACGAGGTTCAGTTTATCTGCAGATTAATTTCTGTT 1559 Query 1566 TAGAGAAAGGCTCATTTATAATATAATAGAGAGGGAAAAGGAAC-AAGTTCTAGAGAGCC 1624 ||||||||||||||||| || |||||||||||||||||| |||| |||| ||||||||| Sbjct 1560 TAGAGAAAGGCTCATTT-TATTATAATAGAGAGGGAAAAAGAACCAAGTAATAGAGAGCC 1618 Query 1625 AATGTAGTTGTTGGAATGTGTAATGTAAATCTAGGTGCCCtttttttttt-ttttt-tt- 1681 |||||||||| ||||||||||||||||||||||||| |||||||||| ||||| || Sbjct 1619 AATGTAGTTG----AATGTGTAATGTAAATCTAGGTGCCTTTTTTTTTTTGTTTTTCTTT 1674 Query 1682 C-----ATACCTCGATATATGTCACACTACGTTTCTGGTCAAATAAGAACATGttttttc 1736 | ||| |||||||||||| ||||||||||||| ||||||||||||| |||||||| Sbjct 1675 CTTTTCATATCTCGATATATGTTACACTACGTTTCTAGTCAAATAAGAAC-TGTTTTTTT 1733 Query 1737 tttctttttt-GTATGAATTTGTTT-ATCAGAAGTCAGA-ATGATTCAGTTTTAAGAAAT 1793 |||||||||| ||||| |||||||| | ||| || | | || ||||||||||||| | Sbjct 1734 TTTCTTTTTTTGTATGGATTTGTTTGAG-AGATGTTTGTCA-GAATCAGTTTTAAGAA-T 1790 Query 1794 TTT 1796 ||| Sbjct 1791 TTT 1793 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68295809285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5