BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26010.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945476 jgi|Araly1|945476|scaffold_701705.1 1290 0.0
Ahg354185 jgi|Araly1|354185|fgenesh1_pg.C_scaffold_7001358 1282 0.0
> Ahg945476 jgi|Araly1|945476|scaffold_701705.1
Length=979
Score = 1290 bits (698), Expect = 0.0
Identities = 881/967 (91%), Gaps = 21/967 (2%)
Strand=Plus/Plus
Query 50 CATCATACGAAATGAGGTCAATCACAGCTTTGTTTTTCCTTTTCTGTTTCCTTGCTCCTT 109
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
Sbjct 10 CATCATACGAAATGAGGGCAATCACAGCTTTGTTTTTCCTTTTCTGTTTCGTTGCTCCCT 69
Query 110 CTGCTTTGGCGCAGCTCCGAAC-TGGGTTCTACAGCCGCTCATGCCCCCGTGCCGAATCT 168
||||||||||||||||||| || ||||||||| ||||||||||||| || || ||||||
Sbjct 70 CTGCTTTGGCGCAGCTCCG-ACAAGGGTTCTACGGCCGCTCATGCCCTCGAGCTGAATCT 128
Query 169 ATCGTGGCTAGTGTTGTTGCCAACCGTTTCAGAAGTGACAAG-TCCATTACTGCAGCATT 227
||||| |||| ||||||||||| ||||||| | ||||| | ||||| ||||| |||||
Sbjct 129 ATCGTTGCTAATGTTGTTGCCAGCCGTTTCCGCCGTGAC-CGTTCCATCACTGCTGCATT 187
Query 228 TCTTCGTATGCAGTTTCATGATTGCTTTGTCAGGGGTTGTGATGCTTCCCTCTTGATCGA 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TCTTCGTATGCAGTTTCATGATTGCTTTGTCAGGGGTTGTGATGCTTCCCTCTTGATCGA 247
Query 288 CCCAAGACCTGGAAGGCCATCAGAGAAAAGCACTGGACCAAATGCAAGCGTGAGAGGCTA 347
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 248 CCCAAGACCTGGAAGGCCATCAGAGAAAAGCACTGGACCAAACGCAAGCGTGAGAGGCTA 307
Query 348 CGAGATCATTGATGAGGCTAAGAGACAGCTCGAGGCTGCATGTCCCCGAACTGTCTCATG 407
|||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 308 CGAGGTCATTGATGAGGCTAAGAGACAACTAGAGGCTGCATGTCCCCGAACTGTCTCATG 367
Query 408 CGCAGACATTGTAACTCTTGCCACAAGAGACTCGGTCGCATTAGCTGGTGGTCCAAGGTT 467
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 368 CGCAGACATTGTAACTCTAGCCACAAGAGACTCGGTCGCATTAGCCGGCGGTCCAAGATA 427
Query 468 CTCAGTACCAACAGGAAGACGTGATGGATTAAGGTCAAACCCCAATGATGTGAACTTACC 527
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 428 CTCAGTACCAACAGGTAGACGTGATGGATTAAGGTCAAACCCTGGTGATGTGAACTTACC 487
Query 528 CGGACCAACAATTCCGGTTAGCGCATCTATCCAATTGTTTGCAGCTCAAGGTATGAATAC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CGGACCAACAATTCCGGTTAGCGCATCTATCCAATTGTTTGCAGCTCAAGGTATGAATAC 547
Query 588 CAACGATATGGTTACACTTATTGGTGGTGGCCACAGCGTCGGTGTTGCACATTGCAGTCT 647
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 548 CAACGATATGGTTACACTTATTGGTGGTGGACACAGCGTTGGTGTTGCACATTGCAGTCT 607
Query 648 CTTCCAGG-ACAGGCTTTCCGACCGTGCAATGGA-ACCCTCATTGAA-GTCTAGCTTGAG 704
|||| ||| |||||||| |||||| |||||||| | |||||||| | |||| |||||
Sbjct 608 CTTC-AGGGACAGGCTTGCCGACCCAGCAATGGACAGG-TCATTGAATG-CTAGGTTGAG 664
Query 705 GAGGAAATG-CAGTTCCCCTAACGACCCAACAA-CGTTTTTGGACCAAAAGACTTCATTT 762
|| | ||| | || |||| || ||||| ||| | ||||||||||||| |||| |||||
Sbjct 665 GAACACATGTC-GTGCCCCAAATGACCCGACAGTC-TTTTTGGACCAAAGGACTCCATTT 722
Query 763 ACTGTGGATAACGCAATCTATGGAGAGATCCGAAGACAAAGAGGAATTCTAAGAATTGAT 822
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 723 ACTGTGGATAACGCAATCTATGGAGAGATCCGACGTCAAAGAGGAATTCTAAGAATTGAT 782
Query 823 CAAAACTTGGGTCT-TGATAGATCAACCAGTGGGATTGTGTCTG-GTTATGCATCAAGCA 880
|||||||||||||| | | |||||||| ||||||||||||| | ||| |||||||||||
Sbjct 783 CAAAACTTGGGTCTCTC-TGGATCAACCCGTGGGATTGTGTC-GAGTTTTGCATCAAGCA 840
Query 881 ATACACTCTTCAGAAAGAGATTTGCCGAAGCATTGGTGAAAATGGGTACCATTAAGGTTC 940
|||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||| |||||
Sbjct 841 ATACACTCTTCAGACAGAGATTTGCCCAAGCAATGGTGAAAATGGGCACCATTAGGGTTC 900
Query 941 TTACCGGACGTTCTGGAGAGATCAGGAGAAACTGCAGAGTCTTCAACAACTGAGGACGTT 1000
| || ||||| || |||||||||||||||||||||||| | ||||||||| | | |||||
Sbjct 901 TCACTGGACGGTCCGGAGAGATCAGGAGAAACTGCAGACTGTTCAACAAC-G-G-ACGTT 957
Query 1001 GATTCTT 1007
|||||||
Sbjct 958 GATTCTT 964
> Ahg354185 jgi|Araly1|354185|fgenesh1_pg.C_scaffold_7001358
Length=939
Score = 1282 bits (694), Expect = 0.0
Identities = 868/950 (91%), Gaps = 19/950 (2%)
Strand=Plus/Plus
Query 61 ATGAGGTCAATCACAGCTTTGTTTTTCCTTTTCTGTTTCCTTGCTCCTTCTGCTTTGGCG 120
|||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1 ATGAGGGCAATCACAGCTTTGTTTTTCCTTTTCTGTTTCGTTGCTCCCTCTGCTTTGGCG 60
Query 121 CAGCTCCGAAC-TGGGTTCTACAGCCGCTCATGCCCCCGTGCCGAATCTATCGTGGCTAG 179
|||||||| || ||||||||| ||||||||||||| || || ||||||||||| ||||
Sbjct 61 CAGCTCCG-ACAAGGGTTCTACGGCCGCTCATGCCCTCGAGCTGAATCTATCGTTGCTAA 119
Query 180 TGTTGTTGCCAACCGTTTCAGAAGTGACAAG-TCCATTACTGCAGCATTTCTTCGTATGC 238
||||||||||| ||||||| | ||||| | ||||| ||||| ||||||||||||||||
Sbjct 120 TGTTGTTGCCAGCCGTTTCCGCCGTGAC-CGTTCCATCACTGCTGCATTTCTTCGTATGC 178
Query 239 AGTTTCATGATTGCTTTGTCAGGGGTTGTGATGCTTCCCTCTTGATCGACCCAAGACCTG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGTTTCATGATTGCTTTGTCAGGGGTTGTGATGCTTCCCTCTTGATCGACCCAAGACCTG 238
Query 299 GAAGGCCATCAGAGAAAAGCACTGGACCAAATGCAAGCGTGAGAGGCTACGAGATCATTG 358
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 239 GAAGGCCATCAGAGAAAAGCACTGGACCAAACGCAAGCGTGAGAGGCTACGAGGTCATTG 298
Query 359 ATGAGGCTAAGAGACAGCTCGAGGCTGCATGTCCCCGAACTGTCTCATGCGCAGACATTG 418
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATGAGGCTAAGAGACAACTAGAGGCTGCATGTCCCCGAACTGTCTCATGCGCAGACATTG 358
Query 419 TAACTCTTGCCACAAGAGACTCGGTCGCATTAGCTGGTGGTCCAAGGTTCTCAGTACCAA 478
||||||| |||||||||||||||||||||||||| || |||||||| | |||||||||||
Sbjct 359 TAACTCTAGCCACAAGAGACTCGGTCGCATTAGCCGGCGGTCCAAGATACTCAGTACCAA 418
Query 479 CAGGAAGACGTGATGGATTAAGGTCAAACCCCAATGATGTGAACTTACCCGGACCAACAA 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 CAGGAAGACGTGATGGATTAAGGTCAAACCCTGGTGATGTGAACTTACCCGGACCAACAA 478
Query 539 TTCCGGTTAGCGCATCTATCCAATTGTTTGCAGCTCAAGGTATGAATACCAACGATATGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTCCGGTTAGCGCATCTATCCAATTGTTTGCAGCTCAAGGTATGAATACCAACGATATGG 538
Query 599 TTACACTTATTGGTGGTGGCCACAGCGTCGGTGTTGCACATTGCAGTCTCTTCCAGG-AC 657
||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||
Sbjct 539 TTACACTTATTGGTGGTGGACACAGCGTTGGTGTTGCACATTGCAGTCTCTTC-AGGGAC 597
Query 658 AGGCTTTCCGACCGTGCAATGGA-ACCCTCATTGAA-GTCTAGCTTGAGGAGGAAATG-C 714
|||||| |||||| |||||||| | |||||||| | |||| ||||||| | ||| |
Sbjct 598 AGGCTTGCCGACCCAGCAATGGACAGG-TCATTGAATG-CTAGGTTGAGGAACACATGTC 655
Query 715 AGTTCCCCTAACGACCCAACAA-CGTTTTTGGACCAAAAGACTTCATTTACTGTGGATAA 773
|| |||| || |||||| || | ||||||||||||| |||| ||||||||||||||||
Sbjct 656 -GTGCCCCAAATGACCCATCAGTC-TTTTTGGACCAAAGGACTCCATTTACTGTGGATAA 713
Query 774 CGCAATCTATGGAGAGATCCGAAGACAAAGAGGAATTCTAAGAATTGATCAAAACTTGGG 833
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 CGCTATTTATGGAGAGATCCGAAGCCAAAGAGGAATTCTAAGAATTGATCAAAACTTGGG 773
Query 834 TCTTGATAGATCAACCAGTGGGATTGTGTCTGGTTATGCATCAAGCAATACACTCTTCAG 893
||| | | |||||||| |||| |||||||| ||| |||||| |||||||||||||||||
Sbjct 774 TCTCGCTGGATCAACCCGTGGAATTGTGTCAAGTTTTGCATCGAGCAATACACTCTTCAG 833
Query 894 AAAGAGATTTGCCGAAGC-ATTGGTGAAAATGGGTACCATTAAGGTTCTTACCGGACGTT 952
| ||||||||||| |||| || |||||||||||||||||||||||||||||| ||||| |
Sbjct 834 ACAGAGATTTGCCCAAGCCAT-GGTGAAAATGGGTACCATTAAGGTTCTTACTGGACGCT 892
Query 953 CTGGAGAGATCAGGAGAAACTGCAGAGTCTTCAACAACTGAGGACGTTGA 1002
|||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 893 CTGGAGAGATCAGGAGAAACTGCAGAGTCTTCAACAAC-G-G-ACGTTGA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5