BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26020.2
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492214 jgi|Araly1|492214|fgenesh2_kg.7__1647__AT4G26020.1 1026 0.0
> Ahg492214 jgi|Araly1|492214|fgenesh2_kg.7__1647__AT4G26020.1
Length=906
Score = 1026 bits (555), Expect = 0.0
Identities = 629/666 (94%), Gaps = 0/666 (0%)
Strand=Plus/Plus
Query 22 ATGGCGGCAACAAGCGACGAGCAGATGAATTTGCTTCTCTCCAGTTTCGATCAAATCTAC 81
||||||||||||||||| |||||||||||| || ||||||| ||||||||||| ||||||
Sbjct 1 ATGGCGGCAACAAGCGATGAGCAGATGAATCTGATTCTCTCTAGTTTCGATCAGATCTAC 60
Query 82 GAGGATTTTAAAATCGGGTTGAATGAGATCAATGTTTACAGATCAAAGAGCAATGTTGAA 141
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GAGGATTTTAAAATCGGGTTAAATGAGATCAATGTTTACAGATCTAAGAGCAATGTTGAA 120
Query 142 TCAAGCAGGAGAGAGGTTCTTGAGATTAGTAACAAAAATCTCAAAGAAGAGAATGAAAGG 201
|||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||
Sbjct 121 TCAAGCAGGAGAGAGGTTCTTGAGATTAGTAATAAAAATCTTAAACAAGAGAATGAGAGG 180
Query 202 CTGAAGAAGCTTTACACCGAATCTCTCAACAATTTTGCTGATCAGCTTGAGCATCGAACT 261
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 CTGAAGAAGCTTTATACGGAATCGCTGAACAATTTTGCTGATCAGCTTGAGCATCGAACT 240
Query 262 AAGTGTCACAGCTTGAAAGAAGAATTGAAGAGAGTGAATGATGAAAACAAAAGCAAAGAA 321
||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 241 AAGTGCCACAGCTTGAAAGAAGAACTGAAGAGAGTGATTGATGAAAACAAAAGCAAAGAA 300
Query 322 CATGAACATAGGAATGCTTTGGAATCACTTAGGCAGAAGCATGTAACAAAAGTTGAAGAG 381
| ||||| | ||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 301 CTTGAACTTGGGAATGCTTTGAAATTGCTTAGGCAGAAGCATGTAACAAAGGTTGAAGAG 360
Query 382 CTAGAGTATAAAATCAGAAGCCTTTTGGTTGAAAAAGCAACAAACGATATGGTAATTGAT 441
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGGAGAATAAAATCAGAAGCCTTTTGGTTGAAAAAGCAACAAACGATATGGTAATTGAT 420
Query 442 AGACTTCGACAAGACTTGACAGCTAACAAATCGCATATTCAAGCAATGTCGAAGAAACTG 501
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGCTTCGACAAGACTTGACAGCTAACAAATCGCATATTCAAGCAATGTCGAAGAAACTG 480
Query 502 GATCGAGTAGTTACGGAAGTGGAGTGCAAGTATGAACTCGAGATTCAGGATCTAAAGGAC 561
|||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 481 GATCGAGTAGTTACTGAAGTGGAATGCAAGTATGAGCTCGAGATTCAGGAGCTAAAAGAC 540
Query 562 TGCCTTCTAATGGAACAAGCAGAGAAAAATGATATCAGTAACAAACTTCAGAGTCTGCAG 621
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 TGCCTTCTGATGGAACAAGAAGAGAAAAACGATATCAGTAACAAACTTCAGAGTCTGCAG 600
Query 622 AAGGAATTGCTTATTAGTAGAACGTCAATAGCTGAAAAGCAGAGGGATACAACTTCAAAT 681
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGAATTGCTTATTAGTAAAACGTCAATAGCTGAAAAGCAGAGGGATACAACTTCAAAT 660
Query 682 CGACAG 687
||||||
Sbjct 661 CGACAG 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5