BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26030.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889548 jgi|Araly1|889548|Al_scaffold_0007_1534 619 7e-177
> Ahg889548 jgi|Araly1|889548|Al_scaffold_0007_1534
Length=651
Score = 619 bits (335), Expect = 7e-177
Identities = 572/679 (84%), Gaps = 46/679 (7%)
Strand=Plus/Plus
Query 1 ATGGTTTCTCCTTTCAGTATGCCTTTCA-TAGCTCAAACT-AGTGGTTTTGTTAACTATT 58
||||||||||||||||||||||||| || | ||||||| | |||||||||||||||| ||
Sbjct 1 ATGGTTTCTCCTTTCAGTATGCCTTGCACT-GCTCAAA-TCAGTGGTTTTGTTAACTTTT 58
Query 59 CTCAAGTTTTTATCACTCAAACCATCGCAAAAAGGTATCATGCTCTTATTCCGA-CAAGC 117
||||||||| ||||||||| || ||| |||| |||||||||||| ||||||| | |||
Sbjct 59 CTCAAGTTTCTATCACTCACACTATCACAAATAGGTATCATGCTATTATTCCTACCAA-T 117
Query 118 AATATGGTCATTGTCCAAAATGATAATGATCGTGTCAACCGTTTCATGACTTCTTATCCA 177
|||||||||||||||||||| |||||||||| |||||| ||| ||||| |||||||||||
Sbjct 118 AATATGGTCATTGTCCAAAACGATAATGATCATGTCAAGCGTGTCATGCCTTCTTATCCA 177
Query 178 CCAATTTTGAAATCTACAGTTAACCCCCCAAATGATTTTGATAAACAGTATGAAACCTTC 237
||||||||||| ||||||||| | || ||||||| ||||||||| || || |||||||||
Sbjct 178 CCAATTTTGAACTCTACAGTTCATCCTCCAAATGGTTTTGATAATCATTACGAAACCTTC 237
Query 238 ACACCTAAACCCATCGATTTCTTTTGTTCGCAACAAGACTATGCATGTCGTCAGCATTTG 297
||||| ||||||||||||||| || || | | || | | | |||
Sbjct 238 ACACCCAAACCCATCGATTTC--TT-TT--------G----T-CA----G-C--C-TTTA 273
Query 298 GATATATTTTCATCCTCCCCAAAACA-CTATCATGAGCAATATGTTCATAAAAATGGTCG 356
|||| ||||||||| || |||||||| || |||||| ||||||||||||||| |||||||
Sbjct 274 GATAGATTTTCATCGTCTCCAAAACACCT-TCATGAACAATATGTTCATAAAGATGGTCG 332
Query 357 GTCGGTGAAATATATCTGTAAACCAACAGAGGTCCTTGAAGAAATTCATGACGAAATCGA 416
| | |||||||||||| |||||| | || ||||||||||||||||||||| | || ||
Sbjct 333 GCCAGTGAAATATATCCACAAACCAGCTGACGTCCTTGAAGAAATTCATGACTATATTGA 392
Query 417 TTATGAAAAAGACGGTGGTTGGATATATAGCCTGCCGTTTGAGAAAGACAGTTCATTTAT 476
||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||
Sbjct 393 TTATGAAAAAGACGGTGGTTGGATATATAGCCTACCCTATCAGAAAGACAGTTCATTTAT 452
Query 477 ATGTCTAAAGTGCAATAGTTTGTTTGATACTTCACAAATGTTGGTTG-TACATACAGAGT 535
||| |||||||||| || ||||||||||||||||||| |||| || | |||||| | |
Sbjct 453 GTGTTTAAAGTGCAACCGTGTGTTTGATACTTCACAAATATTGGCTGCT-CATACAAAAT 511
Query 536 TAATTCATTCTAAGAATGAGACTAA-GA------AAAG----G-CTTAAATTACATCATC 583
|| |||||||||||||||||||||| || |||| | || ||| || ||||||
Sbjct 512 TAGTTCATTCTAAGAATGAGACTAATGATGGGGGAAAGAAAAGACTCAAAGTAAATCATC 571
Query 584 AAGAATTCCATGGTAAATCTCATAAGATCAACAAAGATCAAACTGGAGGACAAAGTTGCA 643
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AAGAGGTCCATGGTAAATCTCATAAGATCAACAAAGATCAAACTGGAGGACAAAGTTGCA 631
Query 644 GAAGAAAGTTGAGGCAATA 662
|||||||||| ||||||||
Sbjct 632 GAAGAAAGTTAAGGCAATA 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5