BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26050.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889547 jgi|Araly1|889547|Al_scaffold_0007_1533 1803 0.0
> Ahg889547 jgi|Araly1|889547|Al_scaffold_0007_1533
Length=1161
Score = 1803 bits (976), Expect = 0.0
Identities = 1102/1162 (95%), Gaps = 11/1162 (1%)
Strand=Plus/Plus
Query 64 ATGATGGGTTACGAGCAGATGAATCAGATGACAATGACGACAACAGCGATGATGAAGAAT 123
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGATGGGTTACGAGGAGATGAATCAGATGACAATGACGACAACGGCGATGATGAAGAAT 60
Query 124 TACAATAAGAAGGGACTAATCAATACTCCACAGAAGAAAATGACGAGGAGAAGTGTGTCG 183
| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTCAATAAGAGGGGACCGATCAATACTCCACATAAGAAAATGACGAGGAGAAGTGTGTCG 120
Query 184 GCTATTGATGGTGGT---------GCAGCTGCGACGGCTAAAGAAGGAGATCGCCGTCAG 234
|| |||||||||||| ||||||||||| ||| ||||||||| ||||| | |
Sbjct 121 GCCATTGATGGTGGTGCGGCGGCCGCAGCTGCGACTGCTGGAGAAGGAGACCGCCGCCGG 180
Query 235 AATATCAAGACTCTTGATCTTAGCGGCATGTCCTTGGCTTCTCTCTCTGCCTCTTCTATC 294
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AATCTCAAGACTCTTGATCTTAGCGGCATGTCCTTGGCTTCTCTCTCGGCCTCTTCTATC 240
Query 295 AACTTAGCTTCAATCTCCAAACTCGATCTCTCCAACAACAATATTCAGAAAATTCCGGAA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACTTAGCTTCAATCTCCAAACTCGATCTCTCCAACAACAATATTCAGAAAATTCCGGAA 300
Query 355 TCTCTAGTAGCGAGAATGTTAAATTTGTGGGCATTGGATTTGCAATCCAATCAGCTAAAA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCTAGTAGCGAGAATGTTAAATTTGTGGGCATTGGATTTGCAATCCAATCAGCTAAAA 360
Query 415 ACTCTTCCAAACTCCATTGGATGTCTTTCCAAACTTAAGTTTCTTAATGTCTCCGGAAAT 474
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 ACTCTTCCAAACTCCATTGGATGTCTTTCCAAACTTAAGTTTCTTAATGTGTCCGGAAAT 420
Query 475 TATCTCCAATCTCTCCCCAAAACTATAGAAGATTGCAGATCGCTGGAAGAGCTGAACGCC 534
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TATCTCCAATTTCTCCCCAAAACTATCGAAGATTGCAGATCGCTGGAAGAGCTGAACGCC 480
Query 535 AACTTCAACGAGCTTACAAGGCTCCCAGACGCGATAGGGTTTGAGCTAACGAATCTGACG 594
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 481 AACTTCAACGAGCTTACAAGGCTCCCAGACGCGATAGGATTCGAGCTAACGAATCTGACG 540
Query 595 AAGCTCTCCGTCAACTCAAACAAGCTTGTTCTCTTGCCAAACTCCGTTAGCTACTTGACG 654
||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 541 AAGCTCTCCGTCAACTCCAACAAGCTTGTTCTGTTACCAAACTCCGTTAGCTACTTGACG 600
Query 655 TCGCTGCGTGTGCTCGACGCGCGGCTAAACCGCCTTAGTTCCCTCCCTGAGGATCTTGAG 714
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TCGCTGCGTGTCCTCGACGCGCGGCTAAACCGGCTTAGTTCCCTCCCTGAGGATCTTGAG 660
Query 715 AACCTCGTGAACCTTCAGGTCCTCAACGTTAGCCAGAACTTCCAGCACTTGACGACGTTA 774
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AACCTCGTGAACCTTCAGGTCCTTAACGTTAGCCAGAACTTCCAGCACTTGACGACGTTA 720
Query 775 CCTTACTCCGTTGGGTTGTTGATATCTCTCGTGGAGCTTGATGTTAGTTATAACGGAATT 834
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 721 CCTTACTCCGTTGGGTTGTTGATATCTCTCGTCGAGCTTGACGTTAGTTATAACGGAATT 780
Query 835 ACGGTTTTACCAGACTCCCTCGGCTGTCTTCGCCGGATTCAGAAGCTATCCGTGGAGGGT 894
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 781 ACGGTTTTACCGGACTCCCTCGGCTGTCTTCGCCGGATTCAGAAGCTCTCTGTGGAGGGT 840
Query 895 AATCCCCTCATTTCCCCACCATTTGAAGTGGTGGAACAGGGGTTGGAAGCATTGAAGCAG 954
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 841 AATCCCCTCATTTCCCCACCTTTTGAAGTGGTGGAACAGGGATTGGAAGCATTGAAGCAG 900
Query 955 TATATGAGCGAGAAGATGACCGAGTCTTATAAGAAAACTCCGACCAAGAAAAAGTCTTGG 1014
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 TACATGAGCGAGAAAATGACCGAGTCTTATAAAAAAACTCCGACCAAGAAAAAGTCTTGG 960
Query 1015 GGCATTGGTAAGCTCGTAAAGTACGGCCTGAGCTCTTCTCCGGGGAGGAGTACC-GGCCG 1073
||||||||||||||||| ||||||||||||||||||||||||||||| || | | |||||
Sbjct 961 GGCATTGGTAAGCTCGTCAAGTACGGCCTGAGCTCTTCTCCGGGGAG-AGGAACTGGCCG 1019
Query 1074 TGAAGACGGGAAGGAAGGCTTCATCAATGTATCTGATTACCGCCAAATCGACGGAATCGC 1133
|| |||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1020 TGGAGACGGGAGGGAAGGCTTCATCAATGTATCCGATTATCGCCAAATCGATGGAATCGC 1079
Query 1134 CTCACCGCGACATGTGTCCCTCTTCAACCCGCGACGCCTCTTGTCTCCACTCTCCGCGTA 1193
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 CTCCCCGCGACACGTGTCCCTCTTCAACCCGCGACGCCTTTTGTCTCCACTCTCCGCGTA 1139
Query 1194 TTTCTCTCCTCCTAGGTATTAG 1215
|||||||||||| |||||||||
Sbjct 1140 TTTCTCTCCTCCAAGGTATTAG 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5