BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G26055.1

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889546 jgi|Araly1|889546|Al_scaffold_0007_1532                    291    2e-78


> Ahg889546 jgi|Araly1|889546|Al_scaffold_0007_1532
Length=186

 Score =  291 bits (157),  Expect = 2e-78
 Identities = 179/189 (95%), Gaps = 3/189 (2%)
 Strand=Plus/Plus

Query  1    ATGAACAATAAATTTGGCGGGAAGAAGCCGACGGGAACACCGTCACTAGCGTGGTCGACA  60
            |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || 
Sbjct  1    ATGAACAATAAATTTGGCCGGAAGAAGCCGACGGGAACACCGTCTCTAGCGTGGTCTACC  60

Query  61   GTCGTAGTTGTAGCCTCTCTGCTCGCCGGAGCCTCCGTCGTTCACAATATATACAAGCCA  120
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTCGTCGTTGTAGCCTCTCTGCTCGCCGGAGCCTCCGTCGTTCACAATATATACAAGCCA  120

Query  121  GATCTCACATTACCTCAGATCGAAAACGATGAAGGAGACGAGAAGGAGGAGTCTGCAAAC  180
            ||||||| ||||||||||||||||| ||||||||||||| | | ||||||||||||||||
Sbjct  121  GATCTCAGATTACCTCAGATCGAAAGCGATGAAGGAGAC-A-A-GGAGGAGTCTGCAAAC  177

Query  181  AAAGGTTAA  189
            |||||||||
Sbjct  178  AAAGGTTAA  186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6339251326


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5