BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26060.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945470 jgi|Araly1|945470|scaffold_701699.1 684 0.0
Ahg495799 jgi|Araly1|495799|fgenesh2_kg.8__1615__AT5G57060.1 344 6e-94
Ahg474553 jgi|Araly1|474553|fgenesh2_kg.1__4507__AT1G54217.1 100 1e-20
> Ahg945470 jgi|Araly1|945470|scaffold_701699.1
Length=446
Score = 684 bits (370), Expect = 0.0
Identities = 422/447 (94%), Gaps = 3/447 (1%)
Strand=Plus/Plus
Query 210 TCATCATCTGC-TGAAGAACGTATGGGAGAAACTGTTAAAGAGCGTGGTGATGGAAGTGC 268
||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 TCATCATCTACTTGAAGAACGTATGGGGGAAACTGTTAAAGAGCGCGGTGATGGAAGTGC 60
Query 269 AGAGCTGGTTAAATCCGTAGCTGATAAGCATGCCGGTCTCGTGAGACCAGTTGCTAAATA 328
|||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 61 AGAGCTGGTTAAATCCATGGCTGATAAGCATGTCGGTCTCGTGAGACCAGCTGCTAAATA 120
Query 329 TTACTCTGCAGTTAAAGATGCTATGGTGTGTGGGAAAGGAAGATATACGCTTGTAAAAGA 388
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TTACTCTGCAATTAAAGATTCTATGGTGAGTGGGAAAGGAAGATATACGCTTGTAAAAGA 180
Query 389 CGTAGACGAGGTGGAAAATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGAAT 448
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTTGACGAGGTGGAAAATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGAAT 240
Query 449 CGGATGGTTCTCCTTTCTCTTGGGTTTTGTGTTCCCTTTCTTATGGTACTATGCAACACT 508
||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||| |
Sbjct 241 CGGATGGTTCTCCTTCCTCTTGGGTTTTGTGTTTCCTTTCTTGTGGTACTATGCGACA-T 299
Query 509 TT-TATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCTGCTT 567
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCTATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCTGCTT 359
Query 568 CCGCAATCACTGCGATGGGATTCTCCCTCTTGCTACTAGTGATTGTTGTTTTCTGGTGGC 627
|||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 360 CCGCAATCGCTGCGATGGGATTCTCCCTCCTGCTACTGGTGATTGTTGTTTTCAGGTGGT 419
Query 628 TCTAATGGGTTCTCTGACTTATACGCC 654
|||||||||||| ||||||||||||||
Sbjct 420 TCTAATGGGTTCACTGACTTATACGCC 446
> Ahg495799 jgi|Araly1|495799|fgenesh2_kg.8__1615__AT5G57060.1
Length=755
Score = 344 bits (186), Expect = 6e-94
Identities = 307/364 (84%), Gaps = 14/364 (4%)
Strand=Plus/Plus
Query 270 GAGCTGGTTAAATCCGTAGCTGATAAGCATGCCGGTCTCGTGAGACCAGTTGCTAAATAT 329
||||||| ||||| | | | ||||| |||||| ||| ||| || || ||| ||||
Sbjct 213 GAGCTGGCTAAATTCATTGTTGATAGGCATGCTAAACTCATGAAACAAGCCGCTCGATAT 272
Query 330 TAC-TCTGCAGTTAAAGATGCTATGGTGT-GTGGGAAAGGAAGATATACGCTTGTAAAAG 387
| | || ||| ||||||||| ||||| | |||||||| |||||||||||||||||||||
Sbjct 273 T-CTTCCGCACTTAAAGATGTTATGG-CTCGTGGGAAAAGAAGATATACGCTTGTAAAAG 330
Query 388 ACGTAGACGAGGTGGAAA-ATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGA 446
| |||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||
Sbjct 331 ATGTAGACGACATGGAAACA-GGAGTATATGACAAACCTCTTCCATGCTTTGGTTGTGGA 389
Query 447 ATCGGATGGTTCTCCTTTCTCTTGGGTTTTGTGTT-CC-CTTTCTTATGGTACTATGCAA 504
|||||||||||||||||||||||||| ||| |||| || |||| | ||||||||||| |
Sbjct 390 ATCGGATGGTTCTCCTTTCTCTTGGGATTTATGTTTCCACTTT-TG-TGGTACTATGCTA 447
Query 505 CACTT-TTATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCT 563
|| || || |||||||||||||| |||||||| |||||| ||||||||||||| ||||||
Sbjct 448 CATTTCTT-TATTTCGGGAACTATTACCGCAAAGATCCTCGAGAAAGAGCCGGTCTTGCT 506
Query 564 GCTTCCGCAATCACTGCGATGGGATTCTCCCTCT-TGCTACTAGTGATTGTTGTTTTCTG 622
||||| ||||||||||||||||||||||| || | || |||| |||||| ||| |||| |
Sbjct 507 GCTTCAGCAATCACTGCGATGGGATTCTCTCT-TGTGTTACTCGTGATTTTTGCTTTCCG 565
Query 623 GTGG 626
||||
Sbjct 566 GTGG 569
> Ahg474553 jgi|Araly1|474553|fgenesh2_kg.1__4507__AT1G54217.1
Length=821
Score = 100 bits (54), Expect = 1e-20
Identities = 154/199 (77%), Gaps = 19/199 (10%)
Strand=Plus/Plus
Query 420 AAGCCTCTTCCATGCTTTGGTTGTGGAATCGGATGGTTCTCCTTTCT-CTTGGGTTTTGT 478
||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 199 AAGCCCCTTCCTTGCTTTGGTTGTGGAATCGGATGGTTCTCGTTTCTTCTTGGATTC-GT 257
Query 479 GTTCCC-TTT-CTTATGGTACTAT-GCAACACTTT-TATATTTCGGGAA-CTACTACCGC 533
||||| ||| | | |||| | | || ||| ||| ||||||| | || ||| |||||
Sbjct 258 CTTCCCATTTGCGT--GGTA-TGTTGCTACA-TTTCTATATTT-GACAAACTATTACCGT 312
Query 534 A-AGGATCCTAGAGAAAGAGCCGGCCTTGCTGCTTCCGCAATCA-CTGCGATGGGATTCT 591
| || ||||| | |||||| | || |||||||| ||||| || | |||| || |||||
Sbjct 313 AGAG-ATCCTCGGGAAAGATCTGGTCTTGCTGCCTCCGCTAT-AGCTGCTTTGATATTCT 370
Query 592 CCCTCTTGCTACTAGTGAT 610
| | |||| ||| |||||
Sbjct 371 C--TGTTGC-ACTTGTGAT 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5