BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26070.2
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329070 jgi|Araly1|329070|fgenesh1_pm.C_scaffold_7001297 1716 0.0
> Ahg329070 jgi|Araly1|329070|fgenesh1_pm.C_scaffold_7001297
Length=1068
Score = 1716 bits (929), Expect = 0.0
Identities = 1017/1061 (96%), Gaps = 0/1061 (0%)
Strand=Plus/Plus
Query 117 ATGAACAGAGGAAGCTTATGCCCTAATCCCATCTGTCTCCCTCCTCTTGAGCAATCCATC 176
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACAGAGGCGGCTTATGCCCTAATCCCATCTGTCTCCCTCCTCTTGAGCAATCCATC 60
Query 177 TCCAAATTCTTAACACAGAGTGGAACGTTTAAAGATGGAGATCTTCGAGTGAACAAAGAT 236
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 61 TCCAAATTCTTAACACAGAGTGGAACGTTCAAGGATGGAGATCTTCGAGTGAACAAAGAT 120
Query 237 GGAATCCAGACCGTGTCTCTGTCCGAACCAGGAGCTCCACCTCCTATTGAGCCATTGGAC 296
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GGAATCCAGACCGTGTCTCAGTCCGAGCCAGGAGCTCCACCTCCTATTGAGCCATTGGAC 180
Query 297 AACCAATTGAGTTTGGCAGATTTAGAAGTGATCAAAGTCATTGGCAAAGGAAGTAGTGGT 356
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 181 AACCAATTGAGTTTGGCAGATCTAGAAGTGATCAAAGTCATTGGCAAAGGAGGTAGTGGT 240
Query 357 AATGTCCAGTTGGTCAAACACAAACTCACTCAACAGTTTTTCGCTCTTAAGGTCATTCAA 416
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATGTCCAGTTGGTGAAACACAAACTCACTCAACAGTTTTTCGCTCTTAAGGTCATTCAA 300
Query 417 TTGAACACAGAAGAATCAACATGTCGGGCGATTTCTCAGGAGCTGAGAATAAACTTGAGC 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 TTGAACACAGAAGAATCAACATGTAGGGCGATTTCTCAGGAGCTGAGAATAAACTTGAGC 360
Query 477 TCGCAATGTCCATATCTTGTCTCATGTTATCAATCTTTCTACCACAACGGTCTTGTTTCA 536
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 361 TCACAATGTCCATATCTAGTCTCATGTTATCAGTCTTTCTACCATAACGGTCTTGTTTCA 420
Query 537 ATCATATTGGAATTCATGGATGGTGGATCCCTTGCAGACTTGTTAAAGAAAGTCGGAAAA 596
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 421 ATCATATTGGAGTTCATGGATGGTGGATCCCTTGCTGACTTGTTGAAGAAAGTCGAAAAA 480
Query 597 GTTCCTGAAAACATGCTATCTGCCATCTGCAAGCGAGTTCTTCGAGGTCTTTGTTATATT 656
||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 481 GTTCCTGAAAACATGCTCGCTGCCATCTGCAAGCGAGTCCTTCGAGGTCTTTGCTATATT 540
Query 657 CATCATGAGAGGCGAATCATTCATCGGGACTTAAAGCCTTCAAACTTGCTAATCAATCAT 716
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 541 CACCATGAGAGGCGAATCATTCATCGGGACTTAAAGCCTTCGAACCTGCTAATCAATCAT 600
Query 717 AGAGGTGAAGTCAAGATCACAGACTTTGGTGTCAGCAAGATCTTGACAAGCACAAGTAGT 776
||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 601 AGAGGTGAAATCAAGATCACTGACTTTGGTGTTAGCAAGATCTTGACAAGCACAAGTAGT 660
Query 777 CTTGCTAATTCTTTCGTGGGCACATACCCTTATATGTCTCCAGAGAGAATCAGCGGGAGT 836
|| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 661 CTAGCTAATTCGTTCGTGGGCACATACCCCTATATGTCTCCAGAGAGAATTAGCGGGAGT 720
Query 837 TTGTACAGTAACAAGAGCGATATTTGGAGCTTGGGACTGGTTTTGCTCGAATGTGCAACG 896
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGTACAGTAACAAGAGCGATATCTGGAGCTTGGGACTGGTTTTGCTCGAATGTGCAACG 780
Query 897 GGTAAATTCCCGTATACTCCTCCAGAACACAAGAAAGGATGGAGTAGCGTGTACGAGCTT 956
|||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 781 GGTAAATTCCCGTATATTCCTCCAGAACACAAGAAGGGATGGAGCAGCGTGTACGAGCTT 840
Query 957 GTGGACGCCATTGTTGAAAACCCGCCTCCTTGTGCACCTTCCAATCTCTTTTCTCCAGAG 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 GTGGACGCCATTGTTGAAAACCCGCCTCCTTGTGCACCTTCCCATCTCTTTTCTCCAGAG 900
Query 1017 TTTTGCTCCTTCATCTCGCAATGTGTACAAAAAGATCCAAGGGACAGAAAATCAGCAAAG 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTTGCTCCTTCATCTCGCAATGTGTACAAAAAGATCCAAGGGACAGAAAATCAGCAAAT 960
Query 1077 GAGCTTCTGGAACACAAGTTCGTAAAGATGTTTGAAGATTCGGATACAAATCTCTCGGCT 1136
|| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||
Sbjct 961 GAACTTCTGGAACACAAGTTCGTAAACATGTTTGAAGATTCGGATATGAATCTCTCTGCT 1020
Query 1137 TACTTCACCGACGCAGGATCTTTGATTCCCCCACTTGCTAA 1177
||||||||||||||||||||||||||||| |||||||||||
Sbjct 1021 TACTTCACCGACGCAGGATCTTTGATTCCTCCACTTGCTAA 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5