BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26080.1
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492207 jgi|Araly1|492207|fgenesh2_kg.7__1640__AT4G26080.1 2876 0.0
> Ahg492207 jgi|Araly1|492207|fgenesh2_kg.7__1640__AT4G26080.1
Length=1973
Score = 2876 bits (1557), Expect = 0.0
Identities = 1882/2025 (93%), Gaps = 77/2025 (4%)
Strand=Plus/Plus
Query 16 TTAGCCTACCCATTTCCTCCTTCTTTCTCTCTTCTATCTGTGAACAAGGCAC----ATTA 71
||||||||||||||||||| |||||||||| || |||||||||||||| ||| | ||
Sbjct 1 TTAGCCTACCCATTTCCTCTTTCTTTCTCT-TT-TATCTGTGAACAAGACACAAGAAGTA 58
Query 72 GAACTCTTCTTTTCAACTTTTTTAGGTGTATATAGA-TGAATCTAGAAATAGTTTTATAG 130
||||||||| ||||||| ||||||||||||||||| || |||||||||||| ||| |||
Sbjct 59 GAACTCTTC-TTTCAAC--TTTTAGGTGTATATAGATTG-ATCTAGAAATAG-TTT-TAG 112
Query 131 TTGGAAATTAATTGAAGAGAGAGAGATATTACTACACCAATCTTTTCAAGAGGTCCTAAC 190
||||||||||||| | |||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 113 CTGGAAATTAATTG-A-AGAGAGAGATATTATTACACAAATCTTCTCAAGAGGTCCTAAC 170
Query 191 GAATTACCCACAATCCAGGAAACCCTTATTGAAATTCAATTC-ATTTCTTTCTTTCTGTG 249
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 171 GAATTACCCACAATCCAGGAAACCCTTATTGAAATTCAATTCAATTT-TTTCTTTCTGTG 229
Query 250 TTTGTGATTTTCCCGGGAAATATTTTTGGGTATA--TGTCTCTCTGTTTTTGCTTTCCTT 307
| |||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||
Sbjct 230 -TAGTGATTTTCCCGGG-AATTTTTTTGGGTATATCTCTCTCTCTGTTTTTGCTTTCCTT 287
Query 308 TTTCATAGGAGTCATGTGTTTCTTCTTGTCTTCCTAGCTTCTTCTAATAAAGTCCTTCTC 367
||| | |||| ||||||| | ||||||||||||||| |||| |||| ||
Sbjct 288 TTTGAGAGGACTCATGTG--T-TTCTTGTCTTCCTAG---CTTC---TAAA-------TC 331
Query 368 TTGTGAAAATCTCTCGAATTTTCATTTTTGTTCCATTGGAGCTATCTTATAGATCACA-A 426
|| ||||||||||||||||||||||||||||||||||| || |||| | |
Sbjct 332 ---TG--------TCGAATTTTCATTTTTGTTCCATTGGAGCTATCTTTTATATCAGAGA 380
Query 427 CCAGAGAAAAAGATCAAATCTTTACCGTTAATGGAGGAAGTATCTCCGGCGATCGCAGGT 486
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 381 -GAGAAAAAAAGATCAAAGCTTTACCATTAATGGAGGAAGTATCTCCGGCGATCGCAGGT 439
Query 487 CCTTTCAGGCCATTCTCCGAAACCCAGATGGATTTCACCGGGATCAGATTGGGTAAAGGT 546
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 440 CCTTTCAGGCCATTCTCCGAAACCCAGATGGATTTCACAGGAATCAGATTGAGTAAAGGT 499
Query 547 TACTGC---AATAACCAATACTCAAATCAAGATTCCGAGAACGGAGATCTAATGGTTTCG 603
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 500 TACTGCAATAATAACCAATACTCAACTCAAGATTCCGAGAACGGAGATCTAATGGTTTCG 559
Query 604 TTACCGGAGACTTCATCATGCTCTGTTTCTGGGT--C-ACATGGTTCTGAATCTAGGAAA 660
||| |||||| | ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 560 TTATCGGAGA-GT--TCATGCTCTGTTTCTGGGTCACAACATGGTTCTGAATCTAGGAAA 616
Query 661 GTTTTGATTTCTCGGATCAATTCTCCTAATTTAAACATGAAGGAATCAGCAGCTGCTGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GTTTTGATTTCTCGGATCAATTCTCCTAATTTAAACATGAAGGAATCAGCAGCTGCTGAT 676
Query 721 ATAGTCGTCGTTGATATCTCCGCCGGAGATGAGATCAACGGCTCAGATATTACTAGCGAG 780
||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 677 ATA---GTCGTTGATATCTCCGCCGGAGATGAGATCAACGGCTCATATGTTCCTAGCGAG 733
Query 781 AAGAAGATGATCAGCAGAACAGAGAGTAGGAGTTTGTTTGAATTCAAGAGTGTGCCTTTG 840
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 734 AAGAAGATGATCAGCAGAACAGAGAGTAGGAGTCTGTTCGAATTCAAGAGTGTGCCTTTG 793
Query 841 TATGGTTTTACTTCGATTTGTGGAAGAAGACCTGAGATGGAAGATGCTGTTTCGACTATA 900
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 794 TATGGATTTACTTCGATTTGTGGAAGAAGACCTGAGATGGAAGATGCTGTTTCGACAATA 853
Query 901 CCAAGATTCCTTCAATCTTCCTCTGGTTCGATGTTAGATGGTCGGTTTGATCCTCAATCC 960
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 854 CCAAGATTCCTTCAATCTTCCTCTGGTTCCATGTTAGATGGTCGTTTTGATCCTCAATCA 913
Query 961 GCCGCTCATTTCTTCGGTGTTTACGACGGCCATGGCGGTTCTCAGGTAGCGAACTATTGT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 ACCGCTCATTTCTTCGGTGTTTACGACGGCCATGGCGGTTCTCAGGTAGCGAACTATTGT 973
Query 1021 AGAGAGAGGATGCATTTGGCTTTGGCGGAGGAGATAGCTAAGGAGAAACCGATGCTCTGC 1080
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 974 AGAGAGAGGATGCATTTGGCTTTAGCGGAGGAGATAGCTAAGGAGAAACCGATGCTCTGC 1033
Query 1081 GATGGTGATACGTGGCTGGAGAAGTGGAAGAAAGCTCTTTTCAACTCGTTCCTGAGAGTT 1140
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GACGGTGACACGTGGCTGGAGAAGTGGAAGAAAGCTCTTTTCAACTCGTTCCTGAGAGTT 1093
Query 1141 GACTCGGAGATTGAGTCAGTTGCGCCGGAGACGGTTGGGTCAACGTCGGTGGTTGCCGTT 1200
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1094 GACTCTGAGATCGAGTCAGTTGCGCCGGAGACGGTTGGGTCAACGTCGGTGGTTGCTGTT 1153
Query 1201 GTTTTCCCGTCTCACATCTTCGTCGCTAACTGCGGTGACTCTAGAGCCGTTCTTTGCCGC 1260
||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1154 GTTTTCCCGACTCACATCTTCGTCGCTAACTGCGGTGACTCCAGAGCTGTTCTTTGCCGC 1213
Query 1261 GGCAAAACTGCACTTCCATTATCCGTTGACCATAAACCGGATAGAGAAGATGAAGCTGCG 1320
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1214 GGCAAAACTGCACTCCCATTATCCGTTGACCATAAACCGGATAGAGAAGATGAGGCGGCG 1273
Query 1321 AGGATTGAAGCCGCAGGAGGGAAAGTGATTCAGTGGAATGGAGCTCGTGTTTTCGGTGTT 1380
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1274 AGGATTGAAGCCGCAGGAGGGAAAGTGATCCAGTGGAATGGAGCTCGTGTTTTCGGTGTT 1333
Query 1381 CTCGCCATGTCGAGATCCATTGGCGATAGATACTTGAAACCATCCATCATTCCTGATCCG 1440
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 CTCGCCATGTCTAGATCCATTGGCGATAGATACTTGAAACCATCCATCATTCCTGATCCG 1393
Query 1441 GAAGTGACGGCTGTGAAGAGAGTAAAAGAAGATGATTGTCTGATT-TTGGCGAGTGACGG 1499
||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1394 GAAGTGACGGCTGTGAAGAGAGTTAAAGAAGATGATTGTCTGATTCTT-GCGAGTGACGG 1452
Query 1500 GGTTTGGGATGTAATGACGGATGAAGAAGCGTGTGAGATGGCAAGGAAGCGGATTCTCTT 1559
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1453 GGTTTGGGATGTAATGACGGATGAGGAAGCGTGTGAGATGGCTAGGAAGCGGATTCTCTT 1512
Query 1560 GTGGCACAAGAAAAACGCGGTGGCTGGGGATGCATCGTTGCTCGCGGATGAGCGGAGAAA 1619
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1513 GTGGCACAAGAAGAACGCAGTGGCTGGGGATGCATCGTTGCTCGCAGATGAGCGGAGAAA 1572
Query 1620 GGAAGGGAAAGATCCTGCGGCGATGTCCGCGGCTGAGTATTTGTCAAAGCTGGCGATACA 1679
||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1573 GGAAGGGAAAGATCCCGCAGCGATGTCTGCGGCTGAGTATTTGTCAAAGCTGGCAATACA 1632
Query 1680 GAGAGGAAGCAAAGACAACATAAGTGTGGTGGTGGTTGATTTGAAGCCTCGGAGGAAACT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 GAGAGGAAGCAAAGACAACATAAGTGTGGTGGTGGTTGATTTGAAGCCTCGGAGGAAACT 1692
Query 1740 CAAGAGCAAACCCTTGAACTGAGGCAGAGAGGGTCCTTTTTCTTAATTTTTAAAATGAAT 1799
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1693 CAAGAGCAAACCCTTGAACTGAGGCAGAGAGGGTCCTTTTTCTTAATTTTTAAA-TGAAT 1751
Query 1800 ATGGGTCTCTCCAAG-AAAAAGTATTTACTATTATTAATTTGTGCTTAtt-ttttt---A 1854
||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 1752 ATGGGTCTCTCCAAGGAAAAAGTATTTACTATTATTACTTTGTGCTTATTATTTTTTTTA 1811
Query 1855 ACTAACAAGTTA-TAACCATATGGAGATAATGAAGCTTAATGTGTTAAGCTCTTTTGTCT 1913
|||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 1812 ACTAACAAGTTAATAACCATATG-AGA-AATGTAGCTTAATGTGTTAAGCTCTTTTGTCT 1869
Query 1914 TGACTACATTCTAAAAAGCCCCTTGTATTTTTCTTCCCGGGCTAATTGTAATATGGTTAC 1973
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1870 TGACAACGTTCTAAAAAGCCCCTTGTATTTT-CTTCCCGGGCTAATTGTAATATGGTTAC 1928
Query 1974 AACA---TACATTAAGATGTAGTATTATTGTTTATGCAATTACTT 2015
|||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1929 AACAACATACATTAAGATGTAGTATTATTGTTTATGCAAATACTT 1973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76370941225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5