BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26090.1
Length=3535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945467 jgi|Araly1|945467|scaffold_701696.1 4180 0.0
Ahg492204 jgi|Araly1|492204|fgenesh2_kg.7__1637__AT4G26100.1 113 8e-24
> Ahg945467 jgi|Araly1|945467|scaffold_701696.1
Length=2764
Score = 4180 bits (2263), Expect = 0.0
Identities = 2606/2771 (94%), Gaps = 25/2771 (1%)
Strand=Plus/Plus
Query 240 AGAGCGAGAAA-TCATCGAAATGGATTTCATCTCATCTCTTATCGTTGGCTGTGCTCAGG 298
||||||| ||| |||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct 1 AGAGCGAAAAATTCATCGAAATGGATTTCATCTCATCTCTAATCGTGGGCTTTGCTCAGG 60
Query 299 TGTTGTGTGAATCTATGAATATGGCGGAGAGAAGAGGACATAAGACTGATCTTAGACAAG 358
|||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct 61 TGTTGTGTGAATCTATGAATATGGCGGACAGAAGAGGACACAACACTGATCTCAGACAAG 120
Query 359 CCATCACTGATCTTGAAACAGCCATCGGTGACTTGAAGGCCATACGTGATGACCTGACTT 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CCATCACTGATCTCGAAACAGCCATCGGTGACTTGAAGGCCATACGTGATGACCTGAATT 180
Query 419 TACGGATCCAACAAGACGGTCTAGAGGGACGAAGCTGCTCAAATCGTGCCAGAGAGTGGC 478
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TACGGATCCAACAAGACGATCTAGAGGGACGAAGCTGCTCCAATCGTGCCAGAGAGTGGC 240
Query 479 TTAGTGCGGTGCAAGTAACGGAGACTAAAACAGCCCTAC-TTTTAGTGAGGTTTAGGCGT 537
|||| |||||||||| ||| ||||||||| ||| ||| | ||||||||||||||||||||
Sbjct 241 TTAGCGCGGTGCAAGCAACAGAGACTAAAGCAG-CCTCCATTTTAGTGAGGTTTAGGCGT 299
Query 538 CGGGAACAGAGGACGC-GAATGAGGAGGAGATACCTCAGTTGTTTCGGTTGTGCCGACTA 596
|||||||||||||| | ||||| ||||||||| |||| |||||||||| |||||||||||
Sbjct 300 CGGGAACAGAGGAC-CAGAATGCGGAGGAGATGCCTCGGTTGTTTCGGCTGTGCCGACTA 358
Query 597 CAAACTGTGCAAGAAGGTTTCTGCCATATTGAAGAGCATTGGTGAGCTGAGAGAACGCTC 656
|||||||||||| ||||||| ||| | |||||||||||||| ||||||||||||||||||
Sbjct 359 CAAACTGTGCAATAAGGTTTGTGCGACATTGAAGAGCATTGATGAGCTGAGAGAACGCTC 418
Query 657 TGAAGCTATCAAAACAGATGGCGGGTCAATTCAAGTAACTTGTAGAGAGATACCCATCAA 716
||||| ||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 419 TGAAGATATTAAAACAGATGGCGGGTCAATTCAACAAACATGTAGGGAGATACCCATCAA 478
Query 717 GTCCGTTGTCGGAAATACCACGATGATGGAACAGGTTTTGGAATTTCTCAGTGAAGAAGA 776
|||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 479 GTCCGTGGTCGGAAATACCACGATGATGGAACGGGTTATGGAATTTCTTAGTGAAGAAGA 538
Query 777 AGAAAGAGGAATCATTGGTGTTTATGGACCTGGTGGGGTTGGGAAGACAACGTTAATGCA 836
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 AGAAAGAGGAATCATCGGGGTTTACGGACCTGGTGGGGTTGGGAAGACAACGTTAATGCA 598
Query 837 GAGCATTAACAACGAGCTGATCACAAAAGGACATCAGTATGATGTACTGATTTGGGTTCA 896
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGTATTAACAACGAGCTGATCACAAAAGGACATCAGTATGATGTACTGATTTGGGTTCA 658
Query 897 AATGTCCAGAGAATTCGGCGAGTGTACAATTCAGCAAGCCGTTGGAGCACGGTTGGGTTT 956
||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 659 AATGTCCCGAGAATTCGGCGAGTGTACAATTCAGCAAGCTGTTGGAGCGCGGTTGGGTTT 718
Query 957 ATCTTGGGACGAGAAGGAGACCGGCGAAAACAGAGCTTTGAAGATATACAGAGCTTTGAG 1016
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 ATCTTGGGACGAGAAGGAGACCGGTGAAAACAGAGCTTTGAAGATATACAGAGCTTTGAG 778
Query 1017 ACAGAAACGTTTCTTGTTGTTGCTAGATGATGTCTGGGAAGAGATAGACTTGGAGAAAAC 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCAGAAACGTTTCTTGTTGTTGCTAGATGATGTCTGGGAAGAGATAGACTTGGAGAAAAC 838
Query 1077 TGGAGTTCCTCGACCTGACAGGGAAAACAAATGCAAGGTGATGTTCACGACACGGTCTAT 1136
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 TGGAGTTCCTCGACCTGACAGGGAAAACAAATGCAAGATGATGTTCACGACACGGTCTAT 898
Query 1137 AGCATTATGCAACAATATGGGTGCGGAATACAAGTTGAGAGTGGAGTTTCTGGAGAAGAA 1196
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGCATTATGCAGCAATATGGGTGCGGAATACAAGTTGAGAGTGGAGTTTCTGGAGAAGAA 958
Query 1197 ACACGCGTGGGAGCTGTTCTGTAGTAAGGTATGGAGAAAAGATCTTTTAGAGTCATCATC 1256
| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 959 ATACGCGTGGGAGCTGTTCTGTAGTAAGGTAGGGAGAAAAGATCTCTTGGAGTCATCATC 1018
Query 1257 AATTCGCCGGCTCGCGGAGATTATAGTGAGTAAATGTGGAGGATTGCCACTAGCGTTGAT 1316
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 AATTCGCCGGCTCGCTGAGATTATAGTGAGTAAATGTGGAGGATTGCCGCTAGCGTTGAT 1078
Query 1317 CACTTTAGGAGGAGCCATGGCTCATAGAGAGACAGAAGAAGAGTGGATCCATGCTAGTGA 1376
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1079 CACTTTAGGAGGAGCCATGGCTCACAGAGAGACCGAAGAAGAGTGGATCCACGCTAGTGA 1138
Query 1377 AGTTCTGACTAGATTTCCAGCAGAGATGAAGGGTATGAACTATGTATTTGCCCTTTTGAA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1139 AGTTCTGACTAGATTTCCAGCAGAGATGAAGGGTATGAACTATGTATTTGCCCTTTTAAA 1198
Query 1437 ATTCAGCTACGACAACCTCGAGAGTGATCTGCTTCGGTCTTGTTTCTTGTACTGCGCTTT 1496
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1199 ATTCAGCTACGACAATCTCGATAGTGATCTGCTCCGGTCTTGTTTCTTGTACTGCGCTTT 1258
Query 1497 ATTCCCAGAAGAACATTCTATAGAGATCGAGCAGCTTGTTGAGTACTGGGTCGGCGAAGG 1556
|||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1259 ATTCCCGGAAGAACATTCTATAGAGATAGAACAGCTTGTTGAGTACTGGGTGGGCGAAGG 1318
Query 1557 GTTTCTCACCAGCTCCCATGGCGTTAACACCATTTACAAGGGATATTTTCTCATTGGGGA 1616
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1319 GTTTCTCACCAGCTCCCATGGCGTTAACACCATTTACAAGGGATATTTTCTGATTGGGGA 1378
Query 1617 TCTGAAAGCGGCATGTTTGTTGGAAACCGGAGATGAGAAAACACAGGTGAAGATGCATAA 1676
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCTGAAAGCTGCATGTTTATTGGAAACCGGAGATGAGAAAACACAGGTGAAGATGCATAA 1438
Query 1677 TGTGGTCAGAAGCTTTGCATTGTGGATGGCATCTGAACAGGGGACTTATAAGGAGCTGAT 1736
|||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 1439 TGTGGTAAGAAGCTTTGCACTGTGGATAGCATCTGAACAGGGGACTTACAAGGAGCTGAT 1498
Query 1737 CCTAGTTGAGCCTAGCATGGGACATACTGAAGCTCCTAAAGCAGAAAACTGGCGACAAGC 1796
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CCTAGTTGAGCCTAACATGGGACATACTGAAGCTCCTAAAGCAGAAAACTGGCGACAAGC 1558
Query 1797 GTTGGTGATCTCATTGTTAGATAACAGAATCCAGACCTTGCCTGAAAAACTCATATGCCC 1856
||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1559 GTTGGTGATTTCATTGATAGATAACAGAATCCAGACCTTGCCTGAAAAACCCATATGCCC 1618
Query 1857 GAAACTGACAACACTGATGCTCCAACAGAACAGCTCTTTGAAGAAGATTCCAACAGGGTT 1916
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1619 GAAACTGACAACACTGATGCTCCAACGGAACAGCTCTTTGAAGAAGATTTCAACAGGGTT 1678
Query 1917 TTTCATGCATATGCCTGTTCTCAGAGTCTTGGACTTGTCGTTCACAAGTATCACTGAGAT 1976
|||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1679 TTTCATGCATATGCCTACTCTCAGGGTCTTGGACTTGTCTTTCACAAGTATCACTGAGAT 1738
Query 1977 TCCGTTGTCTATCAAGTATTTGGTGGAGTTGTATCATCTGTCTATGTCAGGAACAAAGAT 2036
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TCCGTTGTCTATTAAGTATTTGGTGGAGTTGTATCATCTGTCTATGTCAGGAACAAAGAT 1798
Query 2037 AAGTGTATTGCCACAGGAGCTTGGGAATCTTAGAAAACTGAAGCATCTGGACCTACAAAG 2096
|||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1799 AAGTGTATTGCCCCGGGAGCTTGGTAATCTTAGAAAGCTGAAGCATCTGGACCTACAAAG 1858
Query 2097 AACTCAGTTTCTTCAGACGATCCCACGAGATGCCATATGTTGGCTGAGCAAGCTCGAGGT 2156
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1859 AACTCAGTTTCTTCAGACGATCCCTCGAGATGCCATATGTTGGCTGAGCAAGCTCGAGGT 1918
Query 2157 TCTGAACTTGTACTACAGTTACGCCGGTTGGGAACTGCAGAGCTTTGGAGAAGATGAAGC 2216
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1919 TCTGAACTTGTACTACAGTTATGCGGGTTGGGAACTGCAGAGCTTTGGAGAAGATGAAGT 1978
Query 2217 AGAAGAACTCGGATTCGCTGACTTGGAATACTTGGAAAACCTAACCACACTCGGTATCAC 2276
|||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1979 AGAAGAACTCGGTTTTGATGACTTGGAATACTTGGAAAACCTAACCACACTTGGTATCAC 2038
Query 2277 TGTTCTCTCATTGGAGACCCTAAAAACTCTCTTCGAGTTCGGTGCTTTGCATAAACATAT 2336
||||||||| |||||||||||||||||||||| |||||| || || ||||||||||||||
Sbjct 2039 TGTTCTCTCGTTGGAGACCCTAAAAACTCTCTACGAGTTTGGGGCCTTGCATAAACATAT 2098
Query 2337 ACAGCATCTCCACGTTGAAGAGTGCAATGAACTCCTCTACTTCAATCTCCCATCACTCAC 2396
|||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2099 ACAGCACCTCCACATTGAAGAGTGCAATGGTCTCCTCAACTTCAATCTCCCATCACTCAC 2158
Query 2397 TAACCATGGCAGGAACCTGAGAAGACTTAGCATTAAAAGTTGCCATGACTTGGAGTACCT 2456
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2159 TAACCATGGCAGGAACCTGAGAAGACTTAGCATTAAAAGTTGCCATGAGTTGGAGTACCT 2218
Query 2457 GGTCACACCCGCAGAT-TT-T-GAAAATGATTGGCTTCCGAGTCTAGAGGTTCTGACGTT 2513
||||||||| |||| || | ||||||||||||||||| || |||||||||||||||||
Sbjct 2219 GGTCACACCAATAGATGTTGTTGAAAATGATTGGCTTCCAAGACTAGAGGTTCTGACGTT 2278
Query 2514 ACACAGCCTTCACAACTTAACCAGAGTGTGGGGAAATTCTGTAAGCCAAGAT---TGTCT 2570
|||||||||||| || |||| |||||||||| ||||| |||||||| |||| |||||
Sbjct 2279 ACACAGCCTTCATAAATTAAGCAGAGTGTGGAGAAATCCTGTAAGCGAAGAAGAGTGTCT 2338
Query 2571 GCGGAATATCCGTTGCATAAACATTTCACACTGCAACAAGCTGAAGAATGTCTCATGGGT 2630
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2339 GCGGAATATCCGTTGCATAAATATTTCACACTGCAACAAGCTGAAGAATGTGTCATGGGT 2398
Query 2631 TCAGAAACTCCCAAAGCTAGAGGTGATTGAACT-GTTCGACTGCAGAGAGATAGAGGAAT 2689
|| ||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 2399 TCCGAAACTCCCAAAGCTAGAGGTGATTGA-CTTGTTCGACTGCAGAGAGCTAGAGGAAT 2457
Query 2690 TGATAAGCGAACACGAGAGTCCATCCGTCGAAGATCCAACATTGTTCCCAAGCCTGAAGA 2749
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2458 TGATAAGTGAACACGAGAGTCCATCCGTTGAAGATCCAACATTGTTCCCAAGCCTGAAGA 2517
Query 2750 CCTTGAGAACTAGGGATCTGCCAGAACTAAACAGCATCCTCCCATCTCGATTTTCATTCC 2809
|||||| | | |||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2518 CCTTGACAGCAAGGGATCTCCCAGAACTAAAGAGCATCCTCCCATCTCGATTTTCTTTCC 2577
Query 2810 AAAAAGTTGAAACATTAGTCATCACAAATTGCCCCAGAGTTAAGAAACTGCCGTTTCAGG 2869
||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||
Sbjct 2578 AAAAAGTTGAAACTTTAGTCATCACTAATTGCCCCAAAGTTAAGAAACTGCCATTTCAGG 2637
Query 2870 AGAGGAGGACCCAGATGAACTTGCCAACAGTTTATTGTGAGGAGAAATGGTGGAAAGCAC 2929
||| || || | || | | || ||||||||||||||||||||||||||| ||||
Sbjct 2638 AGACGA--AC--A--TG--C---C-AAGAGTTTATTGTGAGGAGAAATGGTGGAATGCAC 2685
Query 2930 TGGAAAAAGATCAACCAAACGAAGAGCTTTGTTATTTACCGCGCTTTGTTCCAAATTGAT 2989
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2686 TGGAAAAAGATGAACCAAACAAAGAGCTTTGTTATTTACCGCGCTTTGTTCCAAATTGAT 2745
Query 2990 ATAAGAGCTAA 3000
|| ||||||||
Sbjct 2746 ATGAGAGCTAA 2756
> Ahg492204 jgi|Araly1|492204|fgenesh2_kg.7__1637__AT4G26100.1
Length=1672
Score = 113 bits (61), Expect = 8e-24
Identities = 73/78 (94%), Gaps = 4/78 (5%)
Strand=Plus/Minus
Query 3453 AAATTTCATGGTGGATCAATCAAATTGTATTTTCAAATTTTCGTAGTGTAATA-AC-GGA 3510
||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1672 AAATTTCAT-GTGGATCAATCAAATTGTATTTTCAAATTTTCGTAGTGTAATATAAAGGA 1614
Query 3511 AAAAGGAATAAAAAGGTC 3528
||||||||||||| ||||
Sbjct 1613 AAAAGGAATAAAA-GGTC 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133505966084
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5