BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26100.1
Length=2077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492204 jgi|Araly1|492204|fgenesh2_kg.7__1637__AT4G26100.1 2242 0.0
Ahg950376 jgi|Araly1|950376|scaffold_802263.1 1144 0.0
> Ahg492204 jgi|Araly1|492204|fgenesh2_kg.7__1637__AT4G26100.1
Length=1672
Score = 2242 bits (1214), Expect = 0.0
Identities = 1406/1494 (94%), Gaps = 31/1494 (2%)
Strand=Plus/Plus
Query 272 GGGGTTTCGTGGTTATTTATGGAACCTCGTGTGGGGAACAAGTTTCGTCTCGGCCGAAAG 331
||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 182 GGGGTTTCGTGGTTATTGATGGAACCTCGTGTTGGGAACAAGTTTCGGCTCGGACGAAAG 241
Query 332 ATCGGTAGTGGTTCGTTTGGAGAGATCTATCTCGGTACTAATATTCATACGAATGAAGAA 391
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATCGGTAGTGGTTCGTTTGGGGAGATCTATCTCGGTACTAATATTCATACGAATGAAGAA 301
Query 392 CTGGCTATTAAGCTTGAAAATGTGAAGACAAAACATCCACAGCTGCTCTATGAATCGAAG 451
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 302 GTGGCTATTAAGCTTGAAAGTGTGAAGACAAAACATCCGCAGCTGCTCTATGAATCAAAG 361
Query 452 TTATACAGGATTCTACAAGGGGGAACTGGTGTTCCAAATGTCAAATGGTTTGGTGTTGAA 511
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTGTACAGGATTCTACAAGGGGGAACTGGTGTTCCAAATGTCAAATGGTTTGGTGTTGAA 421
Query 512 GGGGACTATAATGTTTTGGTGATGGATCTACTCGGACCAAGTCTTGAAGATCTCTTCAAT 571
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 422 GGGGACTATAATGTTTTGGTCATGGATTTACTCGGACCAAGTCTTGAAGATCTCTTCAAT 481
Query 572 TTTTGTAGCAGGAAACTTTCATTGAAGTCTGTCCTCATGCTTGCTGATCAAATGATCAAC 631
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 482 TTTTGTAGCAGGAAACTTTCCTTGAAGTCAGTCCTCATGCTTGCTGATCAAATGATCAAC 541
Query 632 CGTGTTGAGTTTTTTCATTCAAAGTCTTTCCTTCACCGAGATCTTAAGCCAGACAACTTC 691
|||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 542 CGTGTTGAGTATTTTCATTCAAAATCTTTCCTTCACCGAGATCTCAAGCCAGACAATTTC 601
Query 692 CTCATGGGCCTTGGAAGGCGTGCGAACCAGGTATACATCATTGACTTTGGTCTTGCTAAG 751
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 602 CTAATGGGCCTTGGAAGGCGTGCAAACCAGGTATACATCATTGACTTTGGTCTTGCTAAG 661
Query 752 AAGTATAGGGATAGTACAACACATCAGCACATTCCCTACAGGGAAAATAAAAACCTGACA 811
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 662 AAGTACAGGGATAGTACAACACATCAGCACATTCCCTACAGGGAAAATAAGAACCTGACA 721
Query 812 GGAACTGCGAGATATGCTAGTATGAACACTCACTTGGGAATTGAACAAAGTCGAAGGGAT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGAACTGCGAGATATGCTAGTATGAACACTCACTTGGGAATTGAACAAAGTCGAAGGGAT 781
Query 872 GATCTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAA 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GATCTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAA 841
Query 932 GGACTGAAAGCTGGAACCAAAAAGCAAAAGTATGAAAGGATTAGTGAAAAGAAAGTTTCT 991
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 842 GGACTGAAAGCTGGAACCAAAAAGCAAAAGTACGAAAGGATTAGCGAAAAGAAAGTTTCT 901
Query 992 ACATCCATTGAGGCTTTATGTCGTGGTTACCCATCCGAATTTGCATCCTATTTCCACTAC 1051
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 902 ACATCCATTGAGGCATTATGTCGTGGTTACCCGTCCGAATTTGCATCATATTTCCACTAC 961
Query 1052 TGTCGGTCGCTTCGGTTTGATGATAAACCAGATTACGCTTATCTGAAAAGAATATTTCGA 1111
||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 962 TGTCGGTCGCTGCGTTTTGATGATAAACCAGATTATGCTTATCTCAAAAGAATATTTCGA 1021
Query 1112 GATCTCTTTATCCGTGAAGGGTTTCAGTTTGATTACGTGTTTGACTGGACAATCTTGAAA 1171
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1022 GATCTCTTTATCCGTGAAGGGTTTCAATTTGATTATGTGTTTGACTGGACAATCTTGAAG 1081
Query 1172 TATCAACAATCACAACTAACCGCTCCCCCATCTCGTGCCCTCAATCCTGCTGTGGGAACT 1231
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct 1082 TATCAACAATCACAACTAACAGCTCCCCCATCTCGTGGCCTCAATCCTGCTGTTGGAACT 1141
Query 1232 AGTGCCGCATTGCCTCCGGGCATTTCCAACATCGATAGATACACAGGGGAGGAAGAAGGG 1291
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AGCGCCGCGTTGCCTCCGGGCATTTCCAACATCGATAGATACACAGGGGAGGAAGAAGGG 1201
Query 1292 CGACCACATATGGAATCATCTCGACGGAGAGTTTCAGGGGCTCTTGATAACTCAGGGAAT 1351
||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1202 CGACCGCATATGGAATCATCTCGACGGAGAGTTTCAGGTGCTCTTGAGAACTCGGGGAAT 1261
Query 1352 ATTTCGAACCAACCGACATCCTCAAGTGCTAGAGACTCCATGATCCCGAGCTCCTCGTTG 1411
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1262 ATTTCGAACCAACAGACATCCTCGAGTGCTAGAGACTCCATGATCCCGAGCTCCTCGTTG 1321
Query 1412 TTTGCACAATCAGCAGGATCATCGAGGAGAGTAACTGCAGTAAGTGGCAGCCGGGACAAT 1471
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1322 TTTGCACAATCAGCAGGATCATCGAGGAGAGTAACGGCGGTGAGTGGCAGCCGGGACAAT 1381
Query 1472 TTTCCAGGCAGCGAGGAGTTGTTGCAGAGAAGCCGTACAGGTGACGTCAGCCGCGGCGTG 1531
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1382 TTTCCAGGTAGCGAGGAGTTGTTGCAGAGAAGCCGTACAGGTGACGTCAGCCGTGGCGTG 1441
Query 1532 ATCCCGAGAAACTCTCCTGG-GGAGGCTGGGAA-A--TC--C-------ACAAGAAGACA 1578
|||||||| |||||||| || |||||||||||| | || | |||||||||||
Sbjct 1442 ATCCCGAGGAACTCTCC-GGTGGAGGCTGGGAAGAGGTCTTCTTCCTCCACAAGAAGACA 1500
Query 1579 CTACGAATCAGTAGTTAAAGGCATCGATAATCTTCAAGTCTCGGACGAACACCATCCCCA 1638
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1501 CTACGAATCAGCGGTTAAAGGCATCGATAATCTTCAAGTCTCGGACGAACACCACCCCCA 1560
Query 1639 CTGA-T--A--CATTAATTTTACT-C-AG-T----G-ACCTTTTTATTCCTTTTTCCGTT 1685
|||| | | |||||||| ||| | || | | ||||||| |||||||||||| ||
Sbjct 1561 CTGAATTGATACATTAATTGTACCACTAGGTCAATGGACCTTTT-ATTCCTTTTTCCTTT 1619
Query 1686 AT-T-ACACTACGAAAATTTGAAAATACAATTTGATTGATCCACCATGAAATTT 1737
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1620 ATATTACACTACGAAAATTTGAAAATACAATTTGATTGATCCAC-ATGAAATTT 1672
Score = 230 bits (124), Expect = 4e-59
Identities = 161/178 (90%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 1 ATCTTCGTATTCAATTCTTgagaggagagagagagagagaAGCATCCCAGAAAACGACAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCGTAATCAATTCTTGAGAGGAGAGAGAGAGAGAGAAGCATCCCAGAAAACGACAT 60
Query 61 TCTGTTCATATGGAGTTTTTTCACCAGATCGAGAGCACGAAGAAGATGATTACTGGGTTT 120
|||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct 61 TCTGTTCAAATGGAGTTT---CACCAGATCGAGAGCATGAGGAAGATGATTACTGGGTTT 117
Query 121 TGATTTAGTCGGCGAAAAAT-CCGTAATCTCATTGTTCGTGATCTCTGGGTTGTTTTT 177
||||| | || | || |||||||||||||||||||||||||||||||||||||
Sbjct 118 TGATTCA-TCTGTTTTTTATTCCGTAATCTCATTGTTCGTGATCTCTGGGTTGTTTTT 174
> Ahg950376 jgi|Araly1|950376|scaffold_802263.1
Length=1349
Score = 1144 bits (619), Expect = 0.0
Identities = 933/1084 (86%), Gaps = 24/1084 (2%)
Strand=Plus/Plus
Query 281 TGGTTATT-T--ATGGAACCTCGTGTGGGGAACAAGTTTCGTCTCGGCCGAAAGATCGGT 337
|||||||| | ||||| ||||||||||| ||||| | |||||| ||| | ||||| ||
Sbjct 10 TGGTTATTATCGATGGAGCCTCGTGTGGGAAACAAATATCGTCTTGGCAGGAAGATTGGA 69
Query 338 AGTGGTTCGTTTGGAGAGATCTATCTCGGTACTAATATTCATACGAATGAAGAACTGGCT 397
|||||||| ||||||||||||||||| |||||| ||||||| |||||||||||| | ||
Sbjct 70 AGTGGTTCATTTGGAGAGATCTATCTTGGTACTCATATTCAAACGAATGAAGAAGTTGCA 129
Query 398 ATTAAGCTTGAAAATGTGAAGACAAAACATCCACAGCTGCTCTATGAATCGAAGTTATAC 457
|| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 130 ATCAAGCTTGAAAATGTGAAAACTAAACATCCGCAGCTGCTCTATGAATCGAAGTTATAC 189
Query 458 AGGATTCTACAAGGG-GGAACTGGTGTTCCAAATGTCAAATGGTTTGGTGTTGAAGGGGA 516
|| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 190 AGAATTCTAC-AGGGAGGAACTGGTGTTCCAAATGTCAAGTGGTTTGGTGTTGAAGGTGA 248
Query 517 CTATAATGTTTTGGTGATGGATCTACTCGGACCAAGTCTTGAAGATC-TCTTCAATTTTT 575
||| |||||| ||||||||||| |||| || || ||||||||||| | | |||||||| |
Sbjct 249 CTACAATGTTCTGGTGATGGATTTACTTGGGCCTAGTCTTGAAGA-CTTGTTCAATTTCT 307
Query 576 GTAGCAGGAAACTTTCATTGAAGTCTGTCCTCATGCTTGCTGATCAAATGATCAACCGTG 635
|||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 308 GTAGCAGGAAACTTTCCTTGAAGTCTGTCCTCATGCTCGCAGATCAAATGATCAACCGTG 367
Query 636 TTGAGTTTTTTCATTC-AAAGTCTTTCCTTCACCGAGATCTTAAGCCAGACAACTTCCTC 694
|||||| ||| ||||| ||| ||||||||||| |||||||||||||||||||| || |||
Sbjct 368 TTGAGTATTTCCATTCGAAA-TCTTTCCTTCATCGAGATCTTAAGCCAGACAATTTTCTC 426
Query 695 ATGGGCCTT-GGAAGGCGTGCGAACCAGGTATACATCATTGACTTTGGTCTTGCTAAGAA 753
||||| || |||||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 427 ATGGG-TTTAGGAAGGCGCGCAAACCAGGTATACATCATCGACTTTGGTCTTGCAAAGAA 485
Query 754 GTATAGGGATAGTACAACACATCAGCACATTCCCTACAGGGAAAATAAAAACCTGACAGG 813
|| |||||| ||| || |||||||||||||||||||| |||||||| || ||||| ||
Sbjct 486 ATACCGGGATAATACTACCCATCAGCACATTCCCTACAGAGAAAATAAGAATCTGACTGG 545
Query 814 AACTGCGAGATATGCTAGTATGAACACTCACTTGGGAATTGAACAAAGTCGAAGGGATGA 873
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 546 AACTGCAAGATATGCTAGTATGAACACTCACTTGGGAATTGAGCAAAGCCGAAGGGATGA 605
Query 874 TCTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAAGG 933
|| || |||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 606 CCTAGAATCTCTTGGTTACATTCTCATGTATTTCCTTAAAGGAAGTCTTCCATGGCAAGG 665
Query 934 ACTGAAAGCTGGAACCAA-AAAGCAAAAGTATGAAAGGATTAGTGAAAAGAAAGTTTCTA 992
||| |||||||||||||| ||| ||||||||||| || || |||||||||||||| ||||
Sbjct 666 ACTTAAAGCTGGAACCAAGAAA-CAAAAGTATGAGAGAATCAGTGAAAAGAAAGTCTCTA 724
Query 993 CATCCATTGAGGCTTTATGTCGTGGTTACCCATCCGAATTTGCATCCTATTTCCACTACT 1052
|||| |||||| | || || |||||||||||||| ||||| ||||| || ||||||||||
Sbjct 725 CATCAATTGAGTCCTTGTGCCGTGGTTACCCATCTGAATTCGCATCTTACTTCCACTACT 784
Query 1053 GTCGGTCGCTTCGGTTTGATGATAAACCAGATTACGCTTATCTGAAAAGAATATTTCGAG 1112
| || ||||| ||||||||||||||||||||||||| ||| || ||||||||||| || |
Sbjct 785 GCCGTTCGCTCCGGTTTGATGATAAACCAGATTACGGTTACCTCAAAAGAATATTCCGGG 844
Query 1113 ATCTCTTTATCCGTGAAGGGTTTCAGTTTGATTACGTGTTTGACTGGACAATCTTGAAAT 1172
| ||||||||||| ||||||||||| || ||||| || ||||||||||| || |||||||
Sbjct 845 ACCTCTTTATCCGCGAAGGGTTTCAATTCGATTATGTCTTTGACTGGACCATATTGAAAT 904
Query 1173 ATCAACAATCACAACTAACCGCTCCCCCATCTCGTGCCCTC--AA-TCCTGCTGTGGGAA 1229
||||||| ||||| ||||| ||||| ||||| |||| | | || ||| || || ||||
Sbjct 905 ATCAACAGTCACAGCTAACGGCTCCTCCATCCCGTGGCTTAGTAAGTCCCGCAGTTGGAA 964
Query 1230 CTAGTGCCGCATTGCCTCCGGGCATTT-CCAACATCGATAGATACACAGGGGAGGAAGAA 1288
| ||| | | |||||||| || | | ||| | | |||||||| |||| ||||| |||
Sbjct 965 CCAGTTCGGGTTTGCCTCCCGG-ACTAACCAGCGTTGATAGATATGCAGGCGAGGACGAA 1023
Query 1289 GG-GCGA--CCAC-ATATGGAATCATCTCGACGGAGAGTTTCAGGGGCTCTTGATAACTC 1344
|| | || |||| | ||||| ||||| ||| ||||| | ||||| |||||||| |||||
Sbjct 1024 GGAGGGAGACCACCA-ATGGATTCATCACGAAGGAGAATGTCAGGAGCTCTTGAAAACTC 1082
Query 1345 AGGG 1348
|||
Sbjct 1083 -GGG 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78123092495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5