BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26110.1
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492203 jgi|Araly1|492203|fgenesh2_kg.7__1636__AT4G26110.1 1827 0.0
Ahg357912 jgi|Araly1|357912|fgenesh1_pg.C_scaffold_8001699 1109 0.0
> Ahg492203 jgi|Araly1|492203|fgenesh2_kg.7__1636__AT4G26110.1
Length=1311
Score = 1827 bits (989), Expect = 0.0
Identities = 1232/1341 (92%), Gaps = 49/1341 (4%)
Strand=Plus/Plus
Query 23 TTTAAGGGTTACGAGTCGCCTCCCC-AAAACCCTTGTCCCTAGtctcttctgcttcttct 81
||||||||||| ||||||||||||| ||||||| | | ||||||||||||||||||
Sbjct 1 TTTAAGGGTTAAGAGTCGCCTCCCCAAAAACCC---T--C--GTCTCTTCTGCTTCTTCT 53
Query 82 tcttcaaa-atctctctcttcACCAAATCCTCAGAAGATGAGCAACGACAAGGATAGCTT 140
| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 54 CCCTCAAATCTCTCTCTCTTCACCAAATCCTCAGAAGATGAGCAACGACAAGGACAACTT 113
Query 141 CAACGTCTCCGATCTTACTGCTGCTCTTAAGGACGAG-GATCGAGCTGGCCTTGTCAATG 199
|||||||||||||||||||||||||||||| || | | |||||||||| |||||||||||
Sbjct 114 CAACGTCTCCGATCTTACTGCTGCTCTTAAAGATG-GCGATCGAGCTGACCTTGTCAATG 172
Query 200 CTCTAAAGAACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTGA 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CTCTAAAGAACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTGA 232
Query 260 CTCCCAATGTGAGAAAGCGCGTTGATGCCTTGAGGGATATACAGAGCCAACATGATGAAC 319
|||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 233 CTCCTATTGTGAGAAAGCGTGTCGATGCCTTGAGGGATATACAGAGCCAACATGATGAAC 292
Query 320 TAGAGGCAAAATTCCGTGAGGAGAGAGCTATTCTTGAAGCCAAGTATCAAACGCTGTATC 379
||||||||||||||||||||||| | || |||||||||||||||||||||| | ||||||
Sbjct 293 TAGAGGCAAAATTCCGTGAGGAGCGGGCGATTCTTGAAGCCAAGTATCAAAAGTTGTATC 352
Query 380 AGCCTTTGTATGTCAAGCGTTATGAGATTGTGAATGGCACTACTGAAGTTGAACTGGCTC 439
||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 353 AGCCTTTGTATACCAAGCGTTATGAGATTGTGAATGGAACTACTGAAGTTGAACAGGCTG 412
Query 440 CAGAGGATGATACCAAGGTGGACCAAGGAGAGGAGAAAACTGCAGAAGAGAAAGGAGTTC 499
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CAGAGGAT-AT--TAAGGCGGACCAAGGAGAGGAGAAAACTGCAGAAGAGAAAGGAGTTC 469
Query 500 CAAGTTTCTGGCTGACAGCTCTGAAAAATAACGATGTTATTTCCGAGGAGGTCACAGAGC 559
||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||
Sbjct 470 CAAGTTTCTGGCTGACAGCCCTGAAAAACAATGATGTTATTTCCGAGGAGGTCACGGAGC 529
Query 560 GTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGTGCAAGATTGAAGAGCCTA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 530 GTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGTGCAAGATTGAAGAACCTA 589
Query 620 AAGGATTCAAACTTGAGTTTTTCTTTGACACGAATCCGTATTTTAAGAACACTGTCTTGA 679
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 590 AAGGATTCAAACTTGAATTTTTCTTTGACACAAATCCATATTTTAAGAACACTGTCTTGA 649
Query 680 CAAAGTCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGGACAG 739
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CAAAGTCTTATCACATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGGACAG 709
Query 740 AAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTCAAGAAGAAGCCTAAGA 799
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 710 AAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTTAAGAAGAAGCCTAAGA 769
Query 800 AAGGTTCAAAGAATACTAAACCAATCACCAAA-CTCGAAGATTGTGAAAGCTTCTTCAAC 858
|||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 770 AAGGTTCAAAGAATGCTAAACCAATCACCAAAAC-CGAAGACTGTGAAAGCTTCTTCAAC 828
Query 859 TTCTTTAGTCCTCCAGAAGTTCCGGATGAAGATGAAGATATCGACGAGGAAAGAGCTGAG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTCTTTAGTCCTCCAGAAGTTCCGGATGAAGATGAAGATATCGACGAGGAAAGAGCTGAG 888
Query 919 GATCTTCAAAACCTGATGGAACAAGATTATGACATCGGATCTACTATTCGGGAAAAGATT 978
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 889 GATCTTCAAAATCTGATGGAACAAGATTATGACATTGGATCTACTATTCGGGACAAGATT 948
Query 979 ATTCCTCGTGCTGTCTCATGGTTTACTGGTGAGGCTATGGAAGCAGAGGATTTTGAAATa 1038
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 949 ATTCCACGTGCTGTCTCATGGTTCACTGGTGAGGCTATGGAAGCAGAGGATTTTGAAATA 1008
Query 1039 gatgacgatgaggaagatgacattgatgaggatga--a-ga---tgaggaagacgaagag 1092
|||| |||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1009 GATGGCGATGAGGAAGATGACATTGATGAGGATGATGAAGAGGATGAGGAAGACGAAGAT 1068
Query 1093 gatgaggaggacgatgatgatgaggatga--ag-a--a-gaa-a--gcaagaCCAAAAAG 1143
|| |||||||| ||||||||||||||||| || | | ||| | ||||||||||||||
Sbjct 1069 GACGAGGAGGATGATGATGATGAGGATGAGGAGGATGAAGAAGAAAGCAAGACCAAAAAG 1128
Query 1144 AAGCCATCAATCGGCAACAAGAAGGGAGGGAGATCTCAGATAGTTGGTGAAGGTAAACAA 1203
|||||||||||| | |||||||| |||||||||||| ||||||||||||| ||| |||||
Sbjct 1129 AAGCCATCAATCAGAAACAAGAAAGGAGGGAGATCTAAGATAGTTGGTGATGGTGAACAA 1188
Query 1204 GATGAGAGGCCACCCGAATGCAAGCAACAGTAATCTTTTACTACGCTCTACCAGACATAA 1263
| |||||||||||| || |||||||||||||||||| ||||||||||||| ||| |
Sbjct 1189 GGTGAGAGGCCACCAGAGTGCAAGCAACAGTAATCT----CTACGCTCTACCAAACA-A- 1242
Query 1264 AAGGATTGCGTGAAAATATAATTCAGGTCATTCTCTGTTCATCAAGAATGAGGATTGAGA 1323
||| |||||||||| ||| | | | |||| ||||||||||||||| ||||||||
Sbjct 1243 --GGACTGCGTGAAAA-ATA-T---G-T--TTCT--GTTCATCAAGAATGACGATTGAGA 1290
Query 1324 AAAGGTTTTGGGATTTTTAAA 1344
||| |||||||| ||||||||
Sbjct 1291 AAAAGTTTTGGGTTTTTTAAA 1311
> Ahg357912 jgi|Araly1|357912|fgenesh1_pg.C_scaffold_8001699
Length=1128
Score = 1109 bits (600), Expect = 0.0
Identities = 968/1142 (85%), Gaps = 39/1142 (3%)
Strand=Plus/Plus
Query 118 ATGAGCAACGACAAGGATAGCTTCAACGTCTCCGATCTTACTGCTGCTCTTAAGGACGAG 177
||||||||||| ||||| | ||||| ||| |||||| |||||||||||||| || |||
Sbjct 1 ATGAGCAACGATAAGGACAATTTCAATGTCAGCGATCTCACTGCTGCTCTTAAAGATGAG 60
Query 178 GATCGAGCTGGCCTTGTCAATGCTCTAAAGAACAAGCTGCAGAATCTGGCTGGTCAGCGT 237
||||||||||| |||||||| ||||| ||||||||| |||||||||| ||||| || | |
Sbjct 61 GATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGTTGCAGAATCTAGCTGGACAACAT 120
Query 238 TCTGATGTGCTCGAGAATCTGACTCCCAATGTGAGAAAG-CGCGTTGATGCCTTGA-GGG 295
|| ||||||||||||||||||||||| || | || ||| || ||||| | || | | |
Sbjct 121 TCCGATGTGCTCGAGAATCTGACTCCTAAAATCAG-AAGACGTGTTGA-GGTTTTACGCG 178
Query 296 ATATACAGAGCCAACATGATGAACTAGAGGCAAAATTCCGTGAGGAGAGAGCTATTCTTG 355
| || ||| || ||||||||||| ||||| | |||||||| |||||||||||| |||||
Sbjct 179 AGATTCAGGGCAAACATGATGAAATAGAGACGAAATTCCGCGAGGAGAGAGCTGCTCTTG 238
Query 356 AAGCCAAGTATCAAACGCTGTATCAGCCTTTGTATGTCAAGCGTTATGAGATTGTGAATG 415
||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||
Sbjct 239 AAGCCAAGTATCAAAAGTTATATCAGCCTTTGTATACCAAGCGTTATGAGATTGTGAATG 298
Query 416 GCA-CTACTGAAGTTGAACTGGCTCCAGAGGATGATACCAAGGTGGACCAAGGAGAGGAG 474
| | |||||||||||||| |||||| | |||||| | ||| ||||||| ||||| |||
Sbjct 299 G-AGCTACTGAAGTTGAAGGGGCTCC--A-GATGATGCTAAGATGGACCATGGAGATGAG 354
Query 475 AAAACTGCAGAAGAGAAAGGAGTTCCAAGTTTCTGGCTGACAGCTCTGAAAAATAACGAT 534
||||||||||||||||||||||| || |||||||||||||| ||||||||||| || |||
Sbjct 355 AAAACTGCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACCGCTCTGAAAAACAATGAT 414
Query 535 GTTATTTCCGAGGAGGTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATT 594
|||||||| |||||| ||||||||||||||||||| || || | |||||||||||||||
Sbjct 415 GTTATTTCTGAGGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATATC 474
Query 595 AAGTGGTGCAAGATTGAAGAGCCTAAA-GGATTCAAACTTGAGTTTTTCTTTGA-CACGA 652
|||||||||||||||||||| || ||| ||||||||||||||||||||||| || || ||
Sbjct 475 AAGTGGTGCAAGATTGAAGAACC-AAAGGGATTCAAACTTGAGTTTTTCTTCGACCA-GA 532
Query 653 ATCCGTATTTTAAGAACACTGTCTTGACAAAGTCTTATCATATGATTGATGAAGATGAGC 712
|||| || || || ||||| | || |||||| | |||||||||||||||||||||||||
Sbjct 533 ATCCTTACTTCAAAAACACCCTATTAACAAAGGCATATCATATGATTGATGAAGATGAGC 592
Query 713 CACTGCTTGAGAAGGCTATGGGGACAGAAATTGATTGGTATCCTGGAAAGTGTC-TAACT 771
| ||||||||||||||||| ||||| || |||||||||||||||||||| || | |||||
Sbjct 593 CTCTGCTTGAGAAGGCTATTGGGACGGAGATTGATTGGTATCCTGGAAAATG-CTTAACT 651
Query 772 CAGAAGATTCTCAAGAAGAAGCCTAAGAAAGGTTCAAAGAATACTAAACCAATCACC-AA 830
||||||||||| ||||||||||||||||||||| |||||||| | || ||||| ||| ||
Sbjct 652 CAGAAGATTCTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCAAA 711
Query 831 ACTCGAAGATTGTGAAAGCTTCTTCAACTTCTTTAGTCCTCCAGAAGTTCCGGATGAAGA 890
||| ||||||||||||||||| ||||||||||| | |||||| ||||||| ||||| ||
Sbjct 712 ACT-GAAGATTGTGAAAGCTTTTTCAACTTCTTCAATCCTCCCCAAGTTCCCGATGATGA 770
Query 891 TGAAGATATCGACGAGGAAAGAGCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGA 950
|||||| || ||||| |||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 771 TGAAGACATTGACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATGA 830
Query 951 CATCGGATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTCTCATGGTTTACTGGTGA 1010
||| || ||||| || ||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 831 CATTGGTTCTACAATCCGGGAGAAGATTATACCTCATGCTGTCTCATGGTTTACTGGTGA 890
Query 1011 GGCTATGGAAGCAGAGGATTTTGAAATagatgacgatgaggaagatgacattgatgagga 1070
|||||| || | |||||| ||||||||||| | || || |||||||| || ||||||||
Sbjct 891 GGCTATTGAGGGAGAGGAGTTTGAAATAGACAATGACGATGAAGATGATATCGATGAGGA 950
Query 1071 tgaagatgagga--a-gacga--a-ga-g--gatgagga-g--gacgatgatga---tga 1115
|||||||||||| | || || | || | |||||||| | ||||||||||| |||
Sbjct 951 TGAAGATGAGGATGAAGAAGATGAAGACGAAGATGAGGAAGAAGACGATGATGAAGATGA 1010
Query 1116 ggatgaagaagaaagcaagaCCAAAAAGAAGCCATCAATCGG-CAACAAGAAGGGAGGGA 1174
||| ||||||| ||||||||||||||||||||| ||| || || |||||| |||||||
Sbjct 1011 GGAGGAAGAAGTAAGCAAGACCAAAAAGAAGCCGTCAGTCTTACA-CAAGAAAGGAGGGA 1069
Query 1175 GATCTCAGATAGTTGGTGAAGGTAAACAAG-ATGAGAGGCCACCCGAATGCAAGCAACAG 1233
|| ||||| | | || ||| | |||| | |||||||| || |||||||||||||||
Sbjct 1070 GACCTCAGCT--TAAC-GATGGTCAGCAAGGA-GAGAGGCCTCCTGAATGCAAGCAACAG 1125
Query 1234 TA 1235
||
Sbjct 1126 TA 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5