BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26120.1
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329065 jgi|Araly1|329065|fgenesh1_pm.C_scaffold_7001292 2492 0.0
> Ahg329065 jgi|Araly1|329065|fgenesh1_pm.C_scaffold_7001292
Length=1791
Score = 2492 bits (1349), Expect = 0.0
Identities = 1649/1794 (92%), Gaps = 20/1794 (1%)
Strand=Plus/Plus
Query 19 accaccaccGCTAGATTCTCTGATTCA---TACGAGTTCAGCAACACAAGCGGCAATAGC 75
||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 7 ACCACCACCGCTAGATTCTCTGATTCATCTTACGAATTTAGCAACACAAGCGGTAATAGT 66
Query 76 TTCTTCGCCGCCGAGTCATCTCTTGATTATCCGACGGAATTTCTCACGCCACCGGAGGTA 135
||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||
Sbjct 67 TTCTTCGCCGCCGAGTCATCTATTGATTACCCGTCGGAATTTCTCACACCACCGGAGGTA 126
Query 136 TCAGCTCTTAAACTTCTGTCTAACTGCCTCGAGTCTGTTTTCGACTCGCCGGAGACGTTC 195
||||| ||| | ||| |||| || ||||| ||||||||||| || || ||||| | |||
Sbjct 127 TCAGCGCTTCAGCTTTTGTCAAATTGCCTTGAGTCTGTTTTTGATTCACCGGAAAATTTC 186
Query 196 TACAGCGATGCTAAGCTAGTTCTCGCCGGCGGCCGGGAAGTTTCTTTTCACCGTTGTATT 255
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 187 TACAGCGACGCTAAGCTAGTTCTCGCCGGCGGCCGGGAAGTTTCTTTCCACCGTTGTATT 246
Query 256 CTTTCCGCGAGAATTCCTGTCTTCAAAAGCGCTTTAGCCACCGTGAAGGAACAAAAATCC 315
|| || ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 247 CTCTCGGCGAGAATTCCTGTCTTCAAAAGTGCGTTAGCCACCGTGAAGGAACAAAAA--- 303
Query 316 TCCACCACCGTGAAGCTCCAGCTGAAAG-AGATCGCCAGAGATTACGAAGTCGGCTTTGA 374
|||||||||||||||||| || || ||| ||||||||| |||||||||||||||||||||
Sbjct 304 TCCACCACCGTGAAGCTCGAGATG-AAGAAGATCGCCACAGATTACGAAGTCGGCTTTGA 362
Query 375 CTCGGTTGTGGCGGTTTTGGCGTATGTTTACAGCGGCAGAGTGAGGTCC-CCGCCGAAGG 433
||||| | | |||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 363 TTCGGTGGCGACGGTTTTGGCGTTTGTTTACAGCGGCAGAGTGAGG-CCGCCGCCGAAGG 421
Query 434 GAGCTTCTGCTTGCGTAGACGACGATTGTTGCCACGTGGCTTGCCGGTCAAAGGTGGATT 493
||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 422 GAGCTTCTGATTGCGTAGACGACGATTGCTGCCACGTGGCTTGCCGGCCAAAGGTGGATT 481
Query 494 TCATGGTGGAGGTTCTTTATCTGTCTTTCGTTTTCCAGATTCAAGAATTAGTTACTCTGT 553
|||||||||||||||||||| || |||||||||||||||||| ||| |||||||| |||
Sbjct 482 TCATGGTGGAGGTTCTTTATTTGGCTTTCGTTTTCCAGATTCCGGAACTAGTTACTATGT 541
Query 554 ATGAGAGGCAGTTCTTGGAAATTGTAGACAAAGTTGTAGTCGAAGACATCTTGGTTATAT 613
||||||| || |||||| ||||||||||||||||||| |||||||||| |||||||||||
Sbjct 542 ATGAGAGACAATTCTTGAAAATTGTAGACAAAGTTGTGGTCGAAGACAGCTTGGTTATAT 601
Query 614 TCAAGCTTGATACTCTATGTGGTAC-AACATACAAGAAGCTTTTGGATAGATGCATAGAA 672
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 602 TCAAGCTTGATACTCTATGTGGT-CAAACATACAAGAAGCTTTTGGATAGATGCATAGAG 660
Query 673 ATTATCGTGAAGTCTGATATAGAACTAGTTAGTCTTGAGAAGTCTTTACCTCAACACATT 732
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 661 ATTATCGTCAAGTCTGATATAGAACTAGTTAGGCTTGAGAAGTCTTTGCCTCAACAC-TT 719
Query 733 T-TCAAGCAAATCA-TAGACATCCGCGAAGCGCTCT-GTCTAGAGCCACCTAAACTAGAA 789
| |||||||||||| | | |||||| ||||||| | |||||||||||||| ||||| ||
Sbjct 720 TGTCAAGCAAATCACT-GGTATCCGCAAAGCGCT-TGGTCTAGAGCCACCTGAACTACAA 777
Query 790 AGGCATGTCAAGAACATATACAAGGCGCTAGACTCAGATGATGTTGAGCTTGTCAAGATG 849
| |||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 778 AAACATGTCAAGAACTTATATAAGGCACTAGACTCTGATGATGTTGAGCTTGTCAAGATG 837
Query 850 CTTTTGCTAGAAGGACACACCAATCTCGATGA-GGCGTATGCTCTTCATTTTGCTATCGC 908
||||||||||| ||||| |||||||| ||| | | |||||||||||||||||||||||||
Sbjct 838 CTTTTGCTAGAGGGACATACCAATCTTGAT-ATGTCGTATGCTCTTCATTTTGCTATCGC 896
Query 909 TCACTGCGCTGTGAAGACCGCGTATGATCTCCTCGAGCTTGAGCTTGCGGATGTTAACCT 968
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 897 GCACTGCGATGTGAAGACCGCGTATGATCTCCTTGAGCTTGAGCTTGCGGATGTTAACCA 956
Query 969 TAGAAATCCGAGGGGATACACTGTGCTTCATGTTGCTGCGATGCGGAAGGAGCCGAAGTT 1028
|||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |
Sbjct 957 TAGAAATCCGAGGGGATACACTGTTCTTCATTTTGCTGCGATGCGGAAGGAGCCAAAGCT 1016
Query 1029 GATAATATCTTTGTTAATGAAAGGGGCAAATATTTTAGACACAACATTGGATGGTAGAAC 1088
||||| ||||||||||||||||||||||||| | ||||| ||| |||||||||||||||
Sbjct 1017 GATAACATCTTTGTTAATGAAAGGGGCAAATGTATTAGATACATTATTGGATGGTAGAAC 1076
Query 1089 CGCTTTAGTGATTGTAAAACGACTCACTAAAGCGGATGACTACAAAACTAGTACGGAGGA 1148
|||| | ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1077 CGCTCTCGTGATTGCAAAACGACTCACTAAAACGGATGACTACAAAACTAGTATGGAGGA 1136
Query 1149 CGGTACGCCTTCTCTGAAAGGCGGATTATGCATAGAGGTACTTGAGCATGAACAAAAACT 1208
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CGGCACACATTCTCTGAAAGGCGGATTATGCATAGAGGTACTTGAGCATGAACAAAAACT 1196
Query 1209 AGAATATTTGTCGCCTATAGAGGCTTCACTTTCTCTTCCAGTAACTCCAGAGGAGTTGAG 1268
||||||| ||| ||||| ||| |||||||||||||||||||| ||||| ||||||||| |
Sbjct 1197 AGAATATGTGTTGCCTAGAGAAGCTTCACTTTCTCTTCCAGTGACTCCCGAGGAGTTGCG 1256
Query 1269 GATGAGGTTGCTCTATTATGAAAACCGAGTTGCACTTGCTCGACTTCTCTTTCCAGTGGA 1328
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1257 GATGATGTTGCTCTATTATGAAAATCGAGTTGCACTTGCTCGACTTCTCTTTCCAGTGGA 1316
Query 1329 AACTGAAACTGTACAGGGTATTGCCAAATTGGAGGAAACATGCGAGTTTACAGCTTCTAG 1388
| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 ATCTGAAATTGTACAGGATATTGCCAAATTGGACGAAACATGCGAGTTTACAGCTTCTAG 1376
Query 1389 TCTCGAGCCTGATCATCACATTGGTGAAAAGCGGACATCACTAGACCTAAATATGGCGCC 1448
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1377 TCTCGAGCCTGATCATCGCATTGGTGAAAAGCGGACATCACTGGACCTAAATATGGCGCC 1436
Query 1449 GTTCCAAATCCATGAGAAGCATTTGAGTAGACTAAGAGCACTTTGTAAAACCGTGGAACT 1508
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1437 TTTCCAAATCCATGAGAAGCATTTGAGTAGACTAAGAGCAGTTTGTAAAACCGTGGAACT 1496
Query 1509 GGGGAAACGCTACTTCAAACGATGTTCGCTTGATCACTTTATGGATACTGAGGACTTGAA 1568
||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1497 GGGGAAACGCTACTTCAGACGTTGTTCGCTTGATCACTTTATGGACACCGAGGACTTGAA 1556
Query 1569 TCATCTTGCTAGCGTAGAAGAAGATACTCCTGAGAAACGGCTACAAAAGAAGCAAAGGTA 1628
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 1557 TCATCTTGCTAGCGTAGAAGAAGACACTCCTGAGAAACGGTTACAGAAGAAGCAAAGGTA 1616
Query 1629 CATGGAACTACAAGAGACTCTGATGAAGACCTTTAGTGAGGACAAGGAGGAATGTGGAAA 1688
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1617 CGTGGAACTACAAGAGACTCTGATGAAGACCTTTAGTGAGGACAAGGAGGAATTTGGAAA 1676
Query 1689 GTCTTCCACACCGAAACCAACCTCTGCGGTGAGGTCTAATAGAAAACTCTCTCACCGGCG 1748
| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1677 GCCTTCCACAGCGAAACCAACCTCTGCGATGAGCTCTAATAGAAAACTCTCTCACCGGCG 1736
Query 1749 CCTAAAAGTGGACAAACGGGATTTTTTGAAACGACCTTACGGGAACGGGGATTA 1802
||||| |||||||||||||||||||||||||||||| | ||| || ||||||||
Sbjct 1737 CCTAAGAGTGGACAAACGGGATTTTTTGAAACGACCATGCGGAAATGGGGATTA 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67686365365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5