BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26130.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492200 jgi|Araly1|492200|fgenesh2_kg.7__1633__AT4G26130.1 1476 0.0
> Ahg492200 jgi|Araly1|492200|fgenesh2_kg.7__1633__AT4G26130.1
Length=1172
Score = 1476 bits (799), Expect = 0.0
Identities = 899/946 (95%), Gaps = 12/946 (1%)
Strand=Plus/Plus
Query 14 AACAACAATGGAGCTACTCACAAGCTTGACCAACTGGTTAACTCCGACGACTCTCTTCCT 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAACAATGGAGCTACTCACAAGCTTGACCAACTGGTTAACTCCGACGACTCTCTTCCT 60
Query 74 CCTCCTCAATTTCACGATCGCCACCATTTTCATCACCAACCGGTTCAGTTCCTGTTCAAG 133
||||||||| |||||||||| ||| || |||||||||||||||||||||||| |||||||
Sbjct 61 CCTCCTCAACTTCACGATCGGCACTATCTTCATCACCAACCGGTTCAGTTCCGGTTCAAG 120
Query 134 AAAACACAA-CCAACATCAAGATGGTTACGGGTCGTCGGGTCATGACCAAAATCAGGCAC 192
||||||||| || | |||||||||||| | || ||||||||||||||||||||| ||||
Sbjct 121 AAAACACAACCCGA-ATCAAGATGGTTTC-GG--GTCGGGTCATGACCAAAATCATGCAC 176
Query 193 GGTTTGGCAGACCTCCTTCGCTCATAGACAGAGTAAAGTCCATCAACTTCCATCTGTACA 252
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 177 GGTTTGGCAGACCTCCTTCGCTCATAGACAGAGTCAGGTCCATCAACTTCCATCTCTACA 236
Query 253 ATTCTCCTTCACCAGAATCCGAGATCCACTACTCCGGGTCGGATCCTAACCCGAACCCAC 312
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 237 ATTCTCCTTCACCAGAATCCGAGATCCACTTCTCCGGGTCGGATCCTAACCAGAATCCAC 296
Query 313 CTCCTTCTCTCTTGCAACGGGTCAAATCCATCAACATGCCTTACTTCAAGTTCCCACAAC 372
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 297 CTCCTTCTCTCTTGCAACGGGTCAAATCCATCAACGTGCCTTACTTCAAGTTCCCACAAC 356
Query 373 ACAATTCTGAAGGAGATTACGCTGCTTACGAGCTCATGACCCAACCCGACGAGACTAACC 432
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 357 ACAATTCTGAAGGAGATTACGCTGCTTACGAGCTCATGACCCGACCCGAAGAGACTAACC 416
Query 433 GGGTCGACCCGATCGACAAGATCCCGGAGGATGACGTCACGACCGAACCTAGATTCGGAG 492
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 417 GGGTCGACCCGATCGACAAGATCCCGGAAGATGACGTCATGACCGAACCTAGATTCGGAG 476
Query 493 CTCCATCACTCTTGCAGCGGGTGAAATCCATAAAGCTTCCTTCTTTATACAGATCCGACC 552
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCCATCACTCTTGCAGCGGGTAAAATCCATAAAGCTTCCTTCTTTATACAGATCCGACC 536
Query 553 CAGATCCAACACCAGAAGTGCAAACACATACGAGGACGAAGTCGGAGTCGAGTAAACCGG 612
|||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 537 CAGATCCAACCCCAGAAGAGCAAACACCGGCGAGGACGAAGTCGGAGTCGAGTAAACCGG 596
Query 613 CGACGAAGAAGAAGAAGAAAGCTACAAAGAAGATGATGAAATCTGCTAGCGAGAGACACA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CGACGAAGAAGAAGAAGAAAGCTACAAAGAAGATGATGAAATCTGCTAGCGAGAGACACA 656
Query 673 TCGGCCGggaagaggaggagacagttgaggccgtggagaagagaaggccggagacgatga 732
||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 657 TCGGCCGGGAAGAGGAG-A--CAGTTGAGGCGGTGGAGAAGAGAAGGCCGGAGACGATGA 713
Query 733 gagttgagagaACGACGTCGATAGGAGACGGAGGAGAAGAAGGTGTCGACGATAAAGCTT 792
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 714 GAGTTGAAAGAACGACGTCGATCGGCGACGGAGGAGAAGAAGGTGTCGACGATAAAGCTT 773
Query 793 CAAATTTCATCAACAAGTTTAAGCAACAGCTTAAGCTACAGAGGCTAGATTCGTTTCTAA 852
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 774 CAAATTTCATCAACAAGTTTAAGCAGCAACTTAAGCTACAGAGGCTAGATTCGTTTCTAA 833
Query 853 GGTACAGAGAGATGCTCAAGAACGATTAAGTGAAGATTACGCTTTTACCCTT-TGTCGGA 911
||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 834 GGTACAGAGAGATGCTCAAGAACGACTAAGTGAAGATTACGCTTTTACCCTTAT-TCGGA 892
Query 912 ATCGTCTTTCCCTCG-CTTTCCAATTTGTACTTTCGTGGTAAATAC 956
|||||||||||| || ||||||| |||| | |||||||||||||||
Sbjct 893 ATCGTCTTTCCC-CGGCTTTCCAGTTTGGAGTTTCGTGGTAAATAC 937
Score = 366 bits (198), Expect = 2e-100
Identities = 229/243 (94%), Gaps = 6/243 (2%)
Strand=Plus/Plus
Query 990 ATACGTATTTTCTAGTTTGTGTTCTAGATTTGGTGATGACTGGATGACAAAACTAGTTTG 1049
|||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 934 ATAC-TATTTTATAGTTTGTG-TCTAGATTTGGTGATGACTGGATGACAAAACTAGTTTG 991
Query 1050 TGTCGTGTGCGTAATTGCTGGATCTGGACGTATGAGTTCCACTGCACttttttgtttttA 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TGTCGTGTGCGTAATTGCTGGATCTGGACGTATGAGTTCCACTGCACTTTTTTGTTTTTA 1051
Query 1110 CTCGATGGTAAAAGTAGTTTTTATGCTGTTTTTACGTGGAAAAAAGTATTTCTAA--TAA 1167
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1052 CTCGATGGTAAAAGTAAATTTTATGCTGTTTTTACGTGGAAAAA-GTATT-CTAAAATAA 1109
Query 1168 TATTATTTTCTTTAAATCGAACATTCATCGATAATTGCGACAGAAGAAAAACATTCATCG 1227
| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1110 TCTTATTTTCTTTAAATCAAACATGCATCGATAGTTGCGACAGAAGAAAAACATTCATCT 1169
Query 1228 ATA 1230
|||
Sbjct 1170 ATA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5