BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26150.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492197 jgi|Araly1|492197|fgenesh2_kg.7__1630__AT4G26150.1 1687 0.0
> Ahg492197 jgi|Araly1|492197|fgenesh2_kg.7__1630__AT4G26150.1
Length=1302
Score = 1687 bits (913), Expect = 0.0
Identities = 1201/1331 (90%), Gaps = 56/1331 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTCCAATTTTCATTACACAATAGATCTCAATGAAGATCAAAACCATCAGCCTTTT 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTTCGAATTTTCATTACACTATAGATCTCAATGAAGATCAAAACCATCAACCTTTT 60
Query 61 TTCGCTTCTCTTGGATCCTCTCTTCATCATCATCTacaacaacaacaacaacaacaacaa 120
|||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 61 TTCGCTTCTCTTGGATCCTCTCTTCATCATCA--T-------------CATCAACAACAA 105
Query 121 caTTTTCATCACCAAGCTTCTTCTAATCCCTCTTCTTTGATGTCACCGTCTCTTTCCTAC 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 106 CATTTTCATCACCAAGCTTCTTCTAATCCCTCTTCTTCGATGTCACCGTCTCTTTCCTAC 165
Query 181 TTTCCTTTCTTGATAAACTCTCGCCAAGATCAAGTATATGTTGGGTACAACAATAACACT 240
|||||||||||||| ||||||| |||||||| | | |||||||||||||||||||||
Sbjct 166 TTTCCTTTCTTGATCAACTCTCCCCAAGATC----A-A-GTTGGGTACAACAATAACACT 219
Query 241 TTTCATGATGTTCTTGATACCCATATCTCCCAACCTCTCGAGACCAAGAACTTTGTATCT 300
|||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 220 TTTCATGATGTTCTTGATACCCATCTCTCTCAACCTCTCGAGACCAAG---TTTGTATCT 276
Query 301 GATGGTGGTTCATCATCAAGTGATCAAATGGTGCCCAAGAAGGAGACACGACTAAAATTG 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 277 GATGGTGGTTCATCATCAAGTGATCAAATGGTGCCAAAGAAGGAGACACGACTAAAATTG 336
Query 361 ACGATAAAGAAGAAAGATAATCATCAAGACCAAACCGATCTTCCTCAATCCCCAATAAAA 420
||||||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 337 ACGATAAAGAAGAAATATAATCATCAAGACCAAACCAATCTTCCTCAATCCCCGACAAAA 396
Query 421 GACATGACAGGAACTAACTCGCTCAAGTGGATATCTTCGAAGGTGAGATTAATGAAGAAG 480
|| | | |||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 397 GATAAGGCAGGAACTAATTCGCTCAAGTGGATATCTTCGAAGGTGAGATTGATGAAGAAG 456
Query 481 AAAAAGGCGATTATTACCACCAGCGACAGCAGCAAACAACACACTAATAACGACCAATCC 540
|||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||
Sbjct 457 AAAAAGGCCATTATTACCACCACCGACAGCAACAAACAACACGCTAATAACGACCAATCC 516
Query 541 TCAAACCTAAGCAATTC-GGAAAGACAGAATGGTTATAACAACGATTGCGTGATTAGGAT 599
|||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 517 TCAAACCTAAGCAA-TCTGGAAAGACAGAATGGTTATAACAACAATTGCGTGATTAGGAT 575
Query 600 TTGCTCCGATTGTAACACAACCAAGACTCCTCTTTGGAGAAGTGGTCCGAGAGGTCCCAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TTGCTCCGATTGTAACACAACCAAGACTCCTCTTTGGAGAAGTGGTCCGAGAGGTCCCAA 635
Query 660 GTCTCTTTGTAACGCTTGTGGAATAAGGCAAAGGAAGGCCAGGCGGGCCGCTATGGCCAC 719
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 636 GTCTCTTTGTAACGCTTGTGGAATAAGGCAAAGAAAGGCGAGGCGGGCCGCTATGGCCAC 695
Query 720 GGCAACCGCAACCGCAGTCTCTGGCGTATCCCCACCGGTCATGAAGAAGAAGATGCAAAA 779
|||||| ||||||||| |||||| |||||| ||||| ||||||||||||||||||||||
Sbjct 696 GGCAACTGCAACCGCAATCTCTGACGTATCACCACCTCTCATGAAGAAGAAGATGCAAAA 755
Query 780 CAAGAACAAGATATCAAATGGAGTTTATAAAATCTTATCTCCTTTGCCCCTAAAGGTAAA 839
||||||||||||||||||||||||||||||| || ||||||| | | |||||||||||
Sbjct 756 CAAGAACAAGATATCAAATGGAGTTTATAAACCCTCCTCTCCTTCGGCTCTAAAGGTAAA 815
Query 840 CACGTGTAAGAGAATGATCACACTAGAGGAGACCGCATTAGCCGAGGATTTGGAGACCCA 899
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 816 CATGTGTAAGAGAATGATCACACTAGAGGAGACCGCAGCAGCCGAGGATTTGGAGACTCA 875
Query 900 GAGCAACTCCACGATGTTATCA--T-CTTCA------GACAATA-TCTATTTCGATGATC 949
|||||||||||||||||||||| | ||||| ||||| | | |||||||||||||
Sbjct 876 GAGCAACTCCACGATGTTATCACCTTCTTCATCTTCAGACAAGAAT-TATTTCGATGATC 934
Query 950 TAGCATTACTGTTGAGCAAAAGTTCAGCTTATCAGCAAGTTTTCCCTCAAGATGAGAAGG 1009
||||| || | ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 935 TAGCAATAATCTTGAGCAAAAGTTTAGCTTATCAGCAAGTTTTCCCTCAGGATGAGAAGG 994
Query 1010 AGGCTGCCATTTTACTAATGGCTCTATCGCACGGAATGGTTCACGGGTGATTATTTTAAG 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGGCTGCCATTTTACTAATGGCTCTATCGCACGGAATGGTTCACGGGTGATTATTTTAAT 1054
Query 1070 TATTTTAATTATAACTCGCATGCTTAAGAAAT-A---A---AATATAAACCATACCATAA 1122
|||||| ||||||||| | |||||||||||| | | |||||||||||||||||||
Sbjct 1055 TATTTTTATTATAACTTACCTGCTTAAGAAATTAGGGAGTTAATATAAACCATACCATAA 1114
Query 1123 GCCCTCATAGCTAGTAATATCTAGATTATT--TGA-TACA-TGAAA-TTTTGTTGC--G- 1174
|||| ||| | | ||||||||||| |||| | | | ||||| ||||||| | |
Sbjct 1115 TCCCTGATACCAAATAATATCTAGAATATTAATTAGTTTGGTGAAAATTTTGTTTCTTGC 1174
Query 1175 -GTGATATATTAATTTCAGTCAGTCCAACTTTATTATAAGAGAGTGTTGGGGTTTAGTAG 1233
||||||||| | | ||||||||||||||||||| |||||||| |||||||||||| |||
Sbjct 1175 CGTGATATAT-A-TATCAGTCAGTCCAACTTTATAATAAGAGAATGTTGGGGTTTACTAG 1232
Query 1234 ATTTTGTATGAAAGGCTTGTATTTTATTTTTTATGGAACTTGATATCCCAACAATGTGGT 1293
|||||||||| ||||||||| ||| ||||||||||||||||||||||| | ||||||||
Sbjct 1233 ATTTTGTATGGAAGGCTTGTGGTTT-TTTTTTATGGAACTTGATATCCCGAGAATGTGGT 1291
Query 1294 TGTTCTTGTTC 1304
|||||||||||
Sbjct 1292 TGTTCTTGTTC 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5