BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26160.1
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492196 jgi|Araly1|492196|fgenesh2_kg.7__1629__AT4G26160.1 1160 0.0
> Ahg492196 jgi|Araly1|492196|fgenesh2_kg.7__1629__AT4G26160.1
Length=801
Score = 1160 bits (628), Expect = 0.0
Identities = 743/796 (93%), Gaps = 18/796 (2%)
Strand=Plus/Plus
Query 26 AACAAAACAAACAAAAAGTCATGTCTCCGACGACGACATCGTTACGATCCCTAAGCTTCT 85
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAGAACAAAC-AAAA---ATGTCTCCGACGACGACATCGTTACGATCCCTAAGCTTCT 56
Query 86 CGCTTTACGCTTCTTCTAATTCTACTCCGATTTCTACACCAATTGAGGCCCGACAGTTAC 145
|||||||||||||||||||||||| ||||| | || ||||||||||| |||||||||||
Sbjct 57 CGCTTTACGCTTCTTCTAATTCTAATCCGAGTCCTTCACCAATTGAGATCCGACAGTTAC 116
Query 146 TGAGTTCATGCAATAGATTCTACGGTCTGTCCTCTTCGAGCTCTTCTTCCTCCCTTACTA 205
|||||||| |||||||||||||||||||| | | | ||||||||||||||||
Sbjct 117 TGAGTTCAAGCAATAGATTCTACGGTCTG------T----C-C-TCTTCCTCCCTTACTA 164
Query 206 CTTCATCTTTGATCGGAAATCTTGTTTTCTCATCAAGGAATCAGTCTCTCTCCGTAAAGG 265
|||| |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 165 CTTCTTCTTCGATCGGAAATCTAGTTTTCTCATCAAGGAATCAGTTTCTCTCCGTAAAGG 224
Query 266 TCCAAGCGTTAGCTGCTGAAACCGAACAGCCAAAATGGTGGGAGAGGAAAGCAGGGCCAA 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TCCAAGCGTTAGCTGCTGAAACCGAACAGCCAAAATGGTGGGAGAGGAAAGCAGGGCCAA 284
Query 326 ACATGATTGACATTACCTCAGCTGAGCAGTTTCTCAACGCGTTAAAAGATGCGGGAGATA 385
||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 285 ACATGGTTGACATTACCTCAACTGAGCAGTTTCTGAACGCGTTAAAAGATGCAGGAGATA 344
Query 386 GATTAGTTATCGTAGATTTTTACGGAACTTGGTGTGGTTCTTGCCGTGCAATGTTCCCAA 445
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 345 GATTAGTTATCGTGGATTTTTATGGAACTTGGTGTGGTTCTTGCCGTGCAATGTTCCCAA 404
Query 446 AGCTCTGCAAAACGGCGAAAGAACACCCT-AACATCTTGTTCCTTAAAGTAAACTTTGAC 504
|||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 405 AGCTTTGCAAAACAGCGAAAGAACACCCTGAA-ATCTTGTTCCTTAAAGTAAACTTTGAT 463
Query 505 GAGAACAAGTCTCTCTGCAAAAGCTTAAACGTCAAGGTGTTACCGTATTTCCACTTCTAC 564
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 464 GAGAACAAGTCTCTCTGCAAAAGCTTAAACGTCAAGGTGTTACCATACTTCCACTTCTAC 523
Query 565 CGCGGTGCTGATGGCCAAGTCGAATCCTTCTCATGCTCTCTTGCCAAGTTCCAGAAACTG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CGCGGTGCTGATGGCCAAGTCGAATCCTTCTCATGCTCTCTTGCCAAGTTCCAGAAACTG 583
Query 625 AGAGAGGCGATAGAGAGACACAATGTAGGAAGTATCAGTAACATCTCTTCTTCAGCTTCT 684
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 584 AGAGAGGCGATAGAGAGACACAATGTAGGAAGTTTCAGTGACATCTCTTCTTCAGCTTCT 643
Query 685 GAGAAAGTTGAAGATTCAAGTGAATAATCAATGCCTGGTTCAGATTGATCACAGATTATT 744
||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||
Sbjct 644 GAGAAAGTTGAAGATTCAAGTGAATAATCAATGTCTGGTTCTGATTGATCAAAGATTCTT 703
Query 745 TTGTTAAATCGCTTCCCTGTATATATGTTGACTGCATTTTCCATGTGGTGCATCATAATT 804
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 704 TTGTTAAATCGCTTCCTTGTATATATGTTGACTGCATTTTGCATATGGTGCATTATAATT 763
Query 805 TTTGTACATAAATAAA 820
|||||| ||||| |||
Sbjct 764 TTTGTATATAAAAAAA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31032054438
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5