BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26170.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945458 jgi|Araly1|945458|scaffold_701687.1 1735 0.0
> Ahg945458 jgi|Araly1|945458|scaffold_701687.1
Length=1272
Score = 1735 bits (939), Expect = 0.0
Identities = 1131/1222 (93%), Gaps = 19/1222 (2%)
Strand=Plus/Plus
Query 318 ATGTTCAAGAGAGACGACTACATTCGAACTAATCATGACCCCtttttttCAAAGTGGCAG 377
||||||||||||||||||||||||||||||||||| ||| || | | ||| |||||||||
Sbjct 22 ATGTTCAAGAGAGACGACTACATTCGAACTAATCACGACGCCGTCTCTTCCAAGTGGCAG 81
Query 378 GGTTTCGCCCGATCTATGTTTCTGCGTAAACCCATTTCAGAAACTGCAGAATT-CGCAAG 436
|||||||||||||| ||| |||||||||||||| | ||||||||||||||||| ||||||
Sbjct 82 GGTTTCGCCCGATCCATGCTTCTGCGTAAACCCGTCTCAGAAACTGCAGAATTACGCAAG 141
Query 437 ACTTTTGCGGACTACTCCTTAATTTCTCGAGATTTAGGTCCAAAG---C-CAAAGGAGCC 492
| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 142 ATTTTTGCGGACTACTCCTTAATTTCTCGAGATTTAGGTCCAAAGATTCTGATAGGAGCC 201
Query 493 AACGAGAAGGAAAATTTCAGAGAAGGGAAAGATCTTGTTGGTAGAAACAGAGTCCAAGGA 552
| ||| ||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||
Sbjct 202 AGCGATAAGGAAAATTTCAGAAAAGGGAAAGATCGTGTAGGTAGATACAGAGTCCAAGGA 261
Query 553 GCCTTCCAGGGTCTGTATGAGCTCAGTCATGACCATGGCAGAAAAGATGATGTTCTTGTG 612
||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 262 GCCTTCCCGGGTCTCTATGAGCTCGGTCATGACCATGGCCGAAAAGATGATGTTCTTGTG 321
Query 613 GCTAATCTTGGTCAA-C-----CTGAAAGCATTAGATCCCGGCTCCGGTCTTATAGTAGA 666
||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||
Sbjct 322 GCTAATCTTGGTCAAGCTGAAAGTGAAAGCATTAGATCTCGGCTCCGGTCTTATACTAGA 381
Query 667 TCTTTTGCTCATCATGACTTGCTTAAGCAGGGTTTGTCTCAAACTATTCTTCCTACTACT 726
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 382 TCTTTTGCTCATCATGACTTGCTTAAGAAGGGTTTGTCTCAAACAATTCTTCCTACTACT 441
Query 727 CAGAACAAAAGTGACAACCAAACCGaagagaagaagtctgattctgaagaagagagagag 786
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 442 CAGAACAAAAGTGGCAACCGAACCGAAGAGAAGAAGTCTGATTCTGCAGAAGAGAGAGAG 501
Query 787 gtcagttctgatgctgctgagaaggagagTAATTCGCTTCCATCTATACTTAGACTCAGT 846
||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 502 GTCAGTTCTGATGCTGCTGAGAAGGAGGGTAATTCTCTTCCATCTCTACTTAGACTCAGT 561
Query 847 CGGTCTAGACCTCAACCGGTTTCAGAGAAACATGATGACATAGTTGATGAGTCTGATTCT 906
||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| |||
Sbjct 562 CGGTCCAGACCTCAACCGGTTTCAGACAGACATGATGACATAGTTGATGGGTCTGACTCT 621
Query 907 GCTTCTGCTTGTGGAGTCTTACTAGAAGATGGTACTACTTGCACTACAACTCCAGTCAAA 966
||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 622 GCTTCTGTTTGTGGAGTCTTACTAGAAGATGGTACTACTTGCTCTACAACTCCAATCAAA 681
Query 967 GGAAGAAAGAGATGCACAGAGCATAAAGGGAAGAGACTTTCTCGTGTTTCCCCCGGGATC 1026
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 682 GGAAGAAAGAGATGCTCAGAGCATAAAGGGAAGAGACTTTCACGTGTTTCCCCCGAAAAA 741
Query 1027 CACATACCGTGTGAAGTTCCTACCGTAAGAGAATGTGAAGAAACTGAGAATATATGTGGA 1086
|||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 742 CACATACCGTGTGAAGCTCCTACTGTAAGAGAATGCGAAGAAACTGACAATATATGTGGA 801
Query 1087 GTGATTTTACCTGACATGATACGTTGCAGAAGTAAACCTGTTTCAAGGAGAAAACGATGC 1146
|||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 802 GTGATTTTACCTGACATGGTACGTTGCAGAACAAAACCTGTTTCAAGGAGAAGACGATGC 861
Query 1147 GAGGATCACAAGGGAATGAGAGTTAACGCCTTCTTTTTTCTGCTGAACCCAACAGAACGT 1206
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 862 GAGGATCACAAGGGAATGAGAGTTAACGCCTTCTTCTTTCTGCTGAACCCAACAGAACGT 921
Query 1207 GATAAAGCCGTCAATGAGGACAAATCCAAA-CCTGAGACAAGTACAGGCATGAACCAAGA 1265
||||| |||||||| ||||| ||||||||| || |||||| |||||||||||||||||||
Sbjct 922 GATAAGGCCGTCAAAGAGGATAAATCCAAATCC-GAGACATGTACAGGCATGAACCAAGA 980
Query 1266 GGGT-----TC-GGGTCTTTTATGTGAAGCTACAACAAAGAATGGATTGCCTTGTACAAG 1319
|| | || ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 981 GGATCCAAGTCCGGGTCTTTTTTGTGAAGCTACAACAAAGAATGGTTTGCCTTGTACAAG 1040
Query 1320 AAGTGCTCCTGAGGGCAGCAAAAGATGTTGGCAGCACAAAGATAAAACATTGAACCACGG 1379
|||||||||||| || |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1041 AAGTGCTCCTGAAGGAAGCAGAAGATGTTGGCAGCACAAAGATAAAACTTTGAACCACGG 1100
Query 1380 ATCATCTGAAAATGTTCAGTCAGCAACTGCAAGTCAAGTAATTTGTGGCTTTAAGCTGTA 1439
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1101 ATCATCCGAAAATGTTCAGTCAGCAACTGTAAGTCAAGTAATTTGTGGCTTTAAGCTGTA 1160
Query 1440 CAATGGATCAGTATGCGAGAAATCTCCAGTGAAAGGAAGGAAGAGATGTGAGGAGCACAA 1499
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1161 CAATGGATCGGTATGCGAGAAATCTCCAGTGAAAGGACGGAAGAGATGTGAGGAGCACAA 1220
Query 1500 GGGGATGAGAATCACATCTTGA 1521
||||||||||||||||||||||
Sbjct 1221 GGGGATGAGAATCACATCTTGA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5