BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26180.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492194 jgi|Araly1|492194|fgenesh2_kg.7__1627__AT4G26180.1 1836 0.0
> Ahg492194 jgi|Araly1|492194|fgenesh2_kg.7__1627__AT4G26180.1
Length=1247
Score = 1836 bits (994), Expect = 0.0
Identities = 1167/1250 (93%), Gaps = 14/1250 (1%)
Strand=Plus/Plus
Query 8 TTTTTCGCTCTCTCAATTTTA--AT-AtcttcttcttcttcttccttcA--TTGAGCTTC 62
||||||||||||||||||||| | ||||||||||||||||||| || || ||||||
Sbjct 1 TTTTTCGCTCTCTCAATTTTATTTTCTTCTTCTTCTTCTTCTTCCTCCAGCTTCAGCTTC 60
Query 63 AGCTTCAACTGTACAAAGATTGGT-AAA--AGGAGAAGAAGAAGATCCATTAAACCGTAT 119
|||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 61 AGCTTCAAGTGTACAAAGACAGGTAAAAGGAGGAGAAGAAGAAGATCCATTAAACCGTAT 120
Query 120 CTATCTTTTCTCTCTCCACTTCTATTTCCATGGCGGAGGGTGAAGAGAAGAACGGAATTA 179
||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||
Sbjct 121 CTATCTTTTCTCTCTCCACCTCTATTTCGATGGCGGAGGGCGAAGAGAAGATCGGAATTA 180
Query 180 TTGATTCGATTCCTTTATTCGCTAAGGAGCTTATTGCCGGCGGCGTCACGGGTGGTATAG 239
|||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||| |
Sbjct 181 TTGATTCGATGCCTTTGTTCGCTAAGGAGCTTATTGCCGGCGGCGTCACCGGCGGTATTG 240
Query 240 CTAAAACCGCCGTTGCTCCACTCGAGCGAATTAAGATTCTTTTCCAGACCAGAAGGGATG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CTAAAACCGCCGTTGCTCCACTCGAGCGAATTAAGATTCTTTTCCAGACCAGAAGGGACG 300
Query 300 AGTTTAAAAGGATAGGACTTGTTGGATCAATCAACAAGATTGGCAAAACTGAAGGTTTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTTTAAAAGGATAGGACTTGTTGGATCAATCAACAAGATTGGCAAAACTGAAGGTTTGA 360
Query 360 TGGGTTTCTACAGAGGGAATGGTGCAAGTGTTGCTCGGATAGTTCCCTATGCAGCTCTTC 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TGGGTTTCTACCGAGGGAATGGTGCAAGTGTTGCTCGGATAGTTCCCTATGCAGCGCTTC 420
Query 420 ATTACATGGCTTATGAGGAATACAGGAGATGGATTATCTTTGGTTTCCCAGACACTACTC 479
|||| ||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||
Sbjct 421 ATTATATGGCTTATGAGGAATACAGGAGATGGATCATCTTCGCTTTCCCCGACACTACTC 480
Query 480 GAGGCCCAT-TGCTTGATCTCGTAGCTGGATCATTTGCTGGTGGTACTGCGGTTCTCTTC 538
||||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGGCCC-TCTACTTGATCTTGTAGCTGGATCATTTGCTGGTGGTACTGCGGTTCTCTTC 539
Query 539 ACCTATCCTCTTGACCTGGTCCGGACTAAGCTCGCTTATCAGACGCAAGTAAAAGCTATT 598
|||||||||||||||||||||||||| ||||||||||||||| |||| |||||| || ||
Sbjct 540 ACCTATCCTCTTGACCTGGTCCGGACAAAGCTCGCTTATCAGGCGCAGGTAAAATCTTTT 599
Query 599 CCCGTGGAACAAATCATATACAGAGGAATTGTAGATTGTTTCTCGAGGACATACAGAGAA 658
||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 600 CCCATGGAACAAATCGTTTACAGAGGAATTACCGATTGTTTCTCGAGGACATACAGAGAA 659
Query 659 TCTGGAGCCCGAGGCCTATATCGTGGTGTAGCTCCTTCTCTCTATGGGATCTTCCCTTAT 718
|||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TCTGGATTCCGTGGCCTATATCGTGGTGTAGCTCCTTCTCTGTATGGGATCTTCCCTTAT 719
Query 719 GCTGGTTTGAAGTTCTACTTCTACGAGGAGATGAAACGTCATGTCCCTCCGGAACATAAG 778
||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||
Sbjct 720 GCTGGTTTGAAGTTCTACTTCTACGAGGAAATGAAACGCCATGTCCCACCTGAACATAAG 779
Query 779 CAAGACATTTCCCTGAAACTCGTTTGTGGGTCAGTCGCTGGATTGCTTGGTCAGACTTTA 838
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 780 AAAGACATTTCCCTGAAACTCGTTTGTGGGTCGGTCGCTGGATTGCTTGGTCAGACCTTA 839
Query 839 ACATACCCTCTCGATGTTGTCCGGAGACAAATGCAGGTTGAGAGACTATATTCAGCCGTT 898
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACATACCCTCTGGATGTAGTCAGGAGACAAATGCAGGTTGAGAGACTATATTCAGCCGTT 899
Query 899 AAGGAAGAAACAAGAAGAGGAACAATGCAAACCCTTTTCAAGATTGCAAGAGAAGAAGGT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGGAAGAAACAAGAAGAGGAACAATGCAAACCCTTTTCAAGATTGCAAGAGAAGAAGGT 959
Query 959 TGGAAGCAACTCTTCTCAGGGCTTAGCATCAATTACCTTAAGGTTGTACCGTCTGTGGCA 1018
||||||||||||||||| ||||||||||||||||||||||||||||| || || || |||
Sbjct 960 TGGAAGCAACTCTTCTCGGGGCTTAGCATCAATTACCTTAAGGTTGTGCCTTCCGTCGCA 1019
Query 1019 ATCGGATTCACAGTGTATGATATTATGAAGCTGCACTTAAGAGTCCCGCCTCGAGAGGAA 1078
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 ATCGGCTTCACAGTGTATGATATTATGAAGCTGCACTTAAGAGTCCCGCCGCGAGAGGAA 1079
Query 1079 CCTGAGGCAGAAGCTGTGACGACAC-GAAAAAGGAAAGTTTTCACCTAATACTAAGATCA 1137
|||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||
Sbjct 1080 CCTGAGGCAGAAGCTGTGACAACACAGAAAA-GGAAAGTTTTCACCTAATTCTAAGATCA 1138
Query 1138 ACCATATGATCTGATTCTTTGTGGTGTTTAAAACCACATATTATTATACTAGATTGTACA 1197
| ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1139 TC-ATATGATCTGATTTTTTGTGGTGTTTAAAACCACAGATTATTATAAGAGATTGTACA 1197
Query 1198 TTCCATTTTTTG-GTAGAGGAAACTGAAGCTAACACTCCTCCATATAAAC 1246
||||||||||| |||||||||| ||||||||||| ||||||| ||||||
Sbjct 1198 TTCCATTTTTTTCGTAGAGGAAATTGAAGCTAACATTCCTCCAAATAAAC 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5