BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26190.1
Length=3520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492193 jgi|Araly1|492193|fgenesh2_kg.7__1626__AT4G26190.1 3258 0.0
> Ahg492193 jgi|Araly1|492193|fgenesh2_kg.7__1626__AT4G26190.1
Length=3331
Score = 3258 bits (1764), Expect = 0.0
Identities = 2376/2661 (89%), Gaps = 84/2661 (3%)
Strand=Plus/Plus
Query 110 ATGGAGAGTGTTTCAGTGGAAACACTTTCAGAAACTGGAAACTCAAATGACGGTCAAACG 169
|||||||||||| ||||||||||||||||||||||||| |||| |||| ||
Sbjct 1 ATGGAGAGTGTTCCAGTGGAAACACTTTCAGAAACTGG---------TGACTGTCAGACA 51
Query 170 AATCCAGAATTGATTGATAAGCATAAGAAGAGATCGGGGAAAAAGAAGAGAAAATCGAGG 229
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 52 AATCCAGAATTGAGTGATAAGCAGAAGAAGAGATCGGGGAAAAAGAAGAGAAAATCGAGG 111
Query 230 AAACTGGATA-ATGAGGTGAAGGATAATGATTCTCATATCAGTAGCCAAATTGGGAACGC 288
|||| ||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 112 AAACCGGA-AGATGAGTTGAAGAATAATGATTCTCATATCAGTAGCCAAATTGGGAACGC 170
Query 289 AGATGAGGCCTTTTCATCTCAAGaaaaaaaaGAAGGGGAAAATGAGAAATCCACTAGTGA 348
|||||||||||||||||||| || ||||||||||| | ||
Sbjct 171 AGATGAGGCCTTTTCATCTC--------------------AA-GAGAAATCCACCATTG- 208
Query 349 AAG-TCAAGTTCGGTTATCCGAGAATCTTTTGTCTTCATTACCTGCAGAGTCCTGTCAAC 407
||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 AAGATCAAGTCCAGTTATCCGAGAATCTTTTGTCTTCATTACCTGCAGAGTCCTGTCAAC 268
Query 408 GAGATTCAGTCTCATGTGAAGAGCCTAGAGCTACACTACATCATACAGACCCAATCTCAT 467
|||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 269 GAGATTCAATCTCATGTGAAGAGCCTGGAGCTACTTTACATCATAAAGACCCAATCTCAT 328
Query 468 GTGAAGATTCTCTACCAGATGATAATAGGAAGGGTTCTAGTACaaaaaaatcaaaaagga 527
|||||||||| ||| |||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 329 GTGAAGATTCACTATCAGATGCTAATAGGAAGGGTTCCAGTAGAAAAAAATCAAAAAGGA 388
Query 528 gagagaagaagaagaagaaag-agGACTTGTCCTGTGAAGAGAAATTGTTGGATGAAGTT 586
||||||||||||||| |||| | | ||| ||||||| |||||| |||||||||| |
Sbjct 389 GAGAGAAGAAGAAGAC-AAAGGACG-CTT--CCTGTGACGAGAAAATGTTGGATGATGCA 444
Query 587 GAAAAAATCACCAGCGAAGACCAAGTGCATCCACCCAACAATCCTTTGTCAAACGGTATG 646
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 445 CAAAAAATCACCAACGAAGACCAAGTTCATCCACTCAACAATCCTTTGTCAAACGGTATA 504
Query 647 GTACAAGAAAGGT-CAGGTGAACTA-ACTCAGGATTCATGTGAGAAGCCTGGAGCGGCAC 704
|||||||| ||| || ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 505 ATACAAGAA-GGTTCACATGAAC-ACACTCAGGATTCATGTGAGAAGCCTGGAGCGGCAC 562
Query 705 AAATTTGTACAGACCCAAATCTGTCAACCTGCAAAGATTCACTGCCAGATGCTACTAATA 764
|| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 563 AACTTTGTACAGATTCAAATCTGTCAACCTGGGAAGATTCACAGCCAGATGCTACTAATA 622
Query 765 TGACTAGTTCCTCGAAAAGAAAGAGAAACAA-AAGGAGGGATAGAAATGTACTGAAAGAA 823
||||||||||| |||||| ||||||||| || ||| |||| |||||| | |||||| |||
Sbjct 623 TGACTAGTTCCCCGAAAAAAAAGAGAAAAAAGAAG-AGGGGTAGAAACGCACTGAAGGAA 681
Query 824 AGTGGTGTTGATATTGGTAGC-ACCAATGCAGAGGTTGCTGTAAC-TGACAATACTACTA 881
| ||||||||||| || | |||||||||||||||||||||| | ||||||||| ||
Sbjct 682 ACTGGTGTTGATACAAATA-CTACCAATGCAGAGGTTGCTGTAAAAT-ACAATACTATTA 739
Query 882 CTGAAGCTGAAGGATCAAGATCGATGAGTATAGAGGAAAACTCCGTTGCTAGTGTTTTGA 941
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 740 CTGAAGCTGAAGGATCAAGATCGATGAGTATAGAGGAAAACTCCATTACAAGTGTTTTGA 799
Query 942 TAAATGGTTGTCTGAAATCCAAGGTTGATACAGTGGAACAACTAGATGGCA-CAGATGTT 1000
||||| |||||| |||||||||||||||||| | |||||||||||| |||| | || ||
Sbjct 800 TAAATAGTTGTCCGAAATCCAAGGTTGATACTGGGGAACAACTAGAGGGCAAC-GACGT- 857
Query 1001 CAAA-TCAATGAAACTGTCTTCCAAACTCAGAGTACTAAAGCCAAGAAAAGGAAGAAGaa 1059
|||| ||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||
Sbjct 858 CAAAATCAATGAAACTGTGTCCCAAACTGAGAGTCCTAAAGCCAAGAAAAGGAAGAAGAA 917
Query 1060 aaaaaCCAAAACAATGGAGGCCTGTGATCCA-TTAGGAAATACTCTGCCGACCTCCACGG 1118
||| |||||||||||||| | |||||| ||| ||||||||||||||||| |||||||||
Sbjct 918 AAAGACCAAAACAATGGATGTCTGTGA-CCAATTAGGAAATACTCTGCCAACCTCCACGA 976
Query 1119 AAAGCGGGCCAGTAGAGTGTGTGGAAAATAATGATGGGAATAAGGAAAAAGATGGAAACA 1178
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 977 AAAGCGGGCCAGTAGAGTGTGTGGAAAATAATGATGGGAATAAGGAAACAGATGGAACCA 1036
Query 1179 CTGAAGTTAAAGAGGACGTTCGTGAAGTTAAATACGATACTATTTCTGAAGCTGAAGGAT 1238
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1037 CTGAAGTTAAAGAGGACGTTCTTGAAGTTAAATACGATATTATTTCTGAAGCTGAAGGAT 1096
Query 1239 CAAAATCGACGACTAAAGAGGAAAAATCTGTTGCTAGTGTTGTGATAAGTAGTTGTCTGA 1298
||| ||||| |||||||||||||||||| | |||||||||| |||||| |||||||| ||
Sbjct 1097 CAAGATCGATGACTAAAGAGGAAAAATCCGCTGCTAGTGTTTTGATAAATAGTTGTCCGA 1156
Query 1299 AATCCAAGGATGATACAGTGGAACAAAAAGAGTGCACAGATGTCAA-CATCAGTGAAACT 1357
|||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||
Sbjct 1157 AATCCAAGGATGATACAGTGGAACAACAAGAGTGCACAGATGTCAAAC-TCAATGAAACT 1215
Query 1358 GTGGCCCAAACTCAGGATCCTAAAGCCaagagaagaaagaagagaaagaCCGAAACAATA 1417
|||| ||||| |||| ||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1216 GTGGTCCAAATTCAGAATCCTAAAGCCAAGAGAAGGAAGAAGAGAAAGACTAAAACATTG 1275
Query 1418 GAGGTGTGTGACCCATTAGGAAATACTTTGTCTACCTCCATGAAAAGCGGGCCAGTAGAG 1477
|||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1276 GAGGACTGTGACCCGTTAGGAAATACTTTGTCAACCTCCACGAAAAGCGGGCCAGTAGAG 1335
Query 1478 CGTGTGGAAAATAATGATGGGAATGGTGGCCGAGAGTTAATTAGTTATTCGGCAAGTCAG 1537
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1336 TGTGTGGAAAATAATGATGGGAATGGTGGCCGAGAGTTAATTAGTTATTTAGCAAGTCAG 1395
Query 1538 ACGGAAAATTATGTAAATGGGGAGGAAAACGGTATTCAGAATCTCGGAAAAACTAAAGAG 1597
| |||||||| ||||| |||||||||||| ||| |||||||||| |||||||||||| ||
Sbjct 1396 AAGGAAAATTCTGTAACTGGGGAGGAAAATGGTTTTCAGAATCTTGGAAAAACTAAAAAG 1455
Query 1598 AAGGAAACAGATGAAAACACTGAAGTTAAAGAGGACGTTCTTGGAGCAGGTGTATGTGAT 1657
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1456 AAGGAAACAGATGAAAACACTGAAGTCAAAGAGGACGTTCTTGGAGCAGGTATATGTGAT 1515
Query 1658 GTAAGGAGCAAAAAACGGAAGGGAAAGAAGAAGAAAA-C-T-T-CA--TC-------TGC 1704
||||| ||||||||||||||| |||||||||| || | | | | || || ||
Sbjct 1516 GTAAGTAGCAAAAAACGGAAGAGAAAGAAGAA-AACATCATCTGCAGATCACAAAACTGG 1574
Query 1705 AGATATGGAGGTCTTTGAGCCATCAGGATCAGTAGAGTGTTTGTTGAATCAGTCAAACGA 1764
|||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1575 AGATATGGAGGTCTGTGAGCCATCAGGATCAGTAGAGTGTTTGTTGGATCATTCAAACGA 1634
Query 1765 AAAAGACATGCAAAATTTTGATGGGAATGCTGGACAAGAGTTCGGGGGAGAGGATATGAC 1824
||||| ||||||||||| ||||| |||||| ||| ||||||| ||||||||||||| |||
Sbjct 1635 AAAAGTCATGCAAAATTGTGATGAGAATGCCGGAAAAGAGTTTGGGGGAGAGGATAAGAC 1694
Query 1825 AATTAAAATTGAAAAATCTGCAACGAGAGAGAAAAGTGGAGTTCAGAAATCTGGAAAACG 1884
|| |||||||| | || |||||||| |||||||||| | |||||||||||||||||||||
Sbjct 1695 AAGTAAAATTGCAGAACCTGCAACGGGAGAGAAAAGCGAAGTTCAGAAATCTGGAAAACG 1754
Query 1885 TAAAGAAATGACAAAAGATAAAAATATTGAATCTAATCAGGATGCACTCG-ACGCAGAAG 1943
||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||
Sbjct 1755 TAAAGAAATGACAAAAGATGGAAATATTGAATCTAATCAGGATGCACTTGGA-GCAGAAG 1813
Query 1944 GTGTTAGTGATGATGGTCACAAAAGAGAGAAGAGGAAGATAAAAAACAAAACAAACTGCG 2003
||||||||||| ||| ||||||| ||||||||||||| || || |||||| | ||||
Sbjct 1814 ATGTTAGTGATGTTGGGGGCAAAAGACAGAAGAGGAAGATGAAGAAGAAAACATATTGCG 1873
Query 2004 AATCAGTTGCCACCATGGATAGTGAGTCAGTACAGTCTTTGTTGTATCAATCGAA-TGGA 2062
||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| || | ||
Sbjct 1874 AATCAGTAGCCACCATGGATAGCGAGTCAGTACAGTGTTTGTTGCATCAATC-AAGTAGA 1932
Query 2063 GAAGGTGTGAAAAATTATGAAGGGAATGCTGATGGGGAGATTGCCAGTAAGGATTTGGCT 2122
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1933 GAAGGTGTGAAAAGTTGTGATGGGAATGCTGATGGGGAGATTGCCAGTAAGGATTTGGCT 1992
Query 2123 AGTAACATTGAAGATTCTGCAACTAAGGGGGAAAGCGTTCA-AGATGATaaaaataccaa 2181
|||||||||||||||||||||| |||||||||||| ||||| || || ||||||||||||
Sbjct 1993 AGTAACATTGAAGATTCTGCAAGTAAGGGGGAAAGTGTTCAGAG-TGTTAAAAATACCAA 2051
Query 2182 aaaaaggaaaaaGGATAGAAAGGGAGAAGTTGATCAGGATGCCAAGGGAGCAGAAGGTGT 2241
||||| |||||| |||| ||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 2052 AAAAAAGAAAAATGATAAAAAGGGAAAAGTTGATCAGGATGCCTTGGGGGCAGAAGGTGT 2111
Query 2242 TAGTACGGTTGAGGTGACAACAAAGAAAAGCAAGAAGAAGAAAAATTTGTTAGATCATAA 2301
||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 2112 TAGTAAGGTTGAGGTCACAACAAAGAAAAGCAAGAAGAAGCAAAATTCGTTAGATCATAA 2171
Query 2302 AACTGACAATATGGAGGAGGATAGT-ATAAAGaaaaatgaaaaaaaGGAAGAAGTTGATC 2360
||||||||||||||||||||| ||| | |||| ||||||| || |||| |||||||||||
Sbjct 2172 AACTGACAATATGGAGGAGGACAGTCA-AAAGGAAAATGAGAATAAGGGAGAAGTTGATC 2230
Query 2361 AGAATGATTTGGGAGCAGAAGGTGTTAGCAAGGTTGAGGTCAAAACAAAGAAGAGCAAGA 2420
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2231 AGAATTCTTTGGGAGCAGAAGGTGTTAGCAAGGTTGAGGTCAAAACAAAGGAGAGCAAGA 2290
Query 2421 GGaaaaaaaaTTCTTTAGATCATAAAACTGATGATATGGAGGGGAAGGATGATGTTTCAT 2480
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2291 GGAAGAAAAATTCTTTAGATCATAAAACTGATGATATGGAGGAGAAGGATGATGTTTCCT 2350
Query 2481 TACCTAGGAAAGATGAAGAACCAGAATTTGACAGGGAAAAGCTTGAAACGTCATTGTCAA 2540
||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2351 TACCTAGTAAAGATGCAGAACCAGAATTTGATAGGGAAAAGCTTGAAACGTCTTTGTCAA 2410
Query 2541 GTTCTGTCTTAATACAAAATGATAACGTAGCTCAAGGAGTTATTTCATCAGAAACTGGAG 2600
|||||||||||||||||||| || || |||||||||||| ||||||| |||||||||
Sbjct 2411 GTTCTGTCTTAATACAAAATAAT---GTGGCTCAAGGAGTTGCTTCATCACAAACTGGAG 2467
Query 2601 ATGTACCTAGATGCACATGTAAAGCTCAACGTACCAGAAAGTTGGTTATATTTGATTTAA 2660
|||||||||||||| ||||| || ||||| ||||||||||||| || |||||||||| |
Sbjct 2468 ATGTACCTAGATGCTCATGTGCAGGTCAACATACCAGAAAGTTGCTTGTATTTGATTTGA 2527
Query 2661 ATGGAATCCTTGCAGATATTGTTCAGGGTTTTACAGGTACATTTC-TTCCAGATGGTAAA 2719
|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 2528 ATGGAATCCTTGCAGATATTGTTCAGGGTTTTACAGGTCCATT-CGTTCCAGATGGTAAA 2586
Query 2720 GTATCATACAGATCAGTCTTC 2740
||||||||||||||||| |||
Sbjct 2587 GTATCATACAGATCAGTTTTC 2607
Score = 699 bits (378), Expect = 0.0
Identities = 449/484 (93%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 2817 TTGGGTTGGATTATATGATCAACATTGTCATGAAAAACCATGCGAGGAATCTGTTGTTCT 2876
||||||||||||||||| | | |||||||||||||||| || ||||||||||||||||||
Sbjct 2720 TTGGGTTGGATTATATGGTGAGCATTGTCATGAAAAACTATTCGAGGAATCTGTTGTTCT 2779
Query 2877 GTTTTGATCAGAATATA-TGCACTACAACGAAGTTTAAAACTCAGGAGAAGAAGGATAAA 2935
||||||| ||||| | | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2780 GTTTTGACCAGAACA-AGTGCACTACAACGAAGTTTAAAACTCAGGAGAAGAACGATAAA 2838
Query 2936 CCTTTGTTCCTCAAGGACCTACGAAGAGTATGGGACCATATTGGGACATGCATCAGTTGT 2995
||| ||||||||||||| ||||||| |||||||||| | |||||||||||| |||||||
Sbjct 2839 CCTCTGTTCCTCAAGGATCTACGAACAGTATGGGACGGTTTTGGGACATGCACCAGTTGT 2898
Query 2996 GGAAAGCGAAAGTATGATGAGACAAACACTTTGCTAGTTGACGATTCACCCGACAAGGCC 3055
|||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 2899 GGAAAGCGAAAGTACGATGAGACAAATACTTTATTAGTTGACGATTCTCCCGACAAGGCC 2958
Query 3056 TTGTGTAATCCTCCACACACTGGAATCTTCCCTAGCCCGTACCAGTACACAAACCGTCAA 3115
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2959 TTGTGTAATCCTCCACACACTGGAATCTTCCCTTCCCCGTACCAGTACACAGACCGTCAA 3018
Query 3116 GATTCTGCATTGGGGCCTGAGGGTGAGCTAAGGAAGTATCTAGAAAGATTAGCGGATGCG 3175
|||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 3019 GATTCTGCATTGGGACGTGAGGGTGAGCTAAGGAAGTATCTTGAAAGATTAGCAGATGCA 3078
Query 3176 GAGAACGTTCAGAAGTTTGTAGCGGAGAATCCATTCGGTCAAACTGCCATAACTGAGACA 3235
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3079 GAGAACGTTCAGAAGTTTGTAGCGGAGAATCCATTCGGTCAGACTGCCATAACTGAGACA 3138
Query 3236 CACGAGTCATGGGAGTTTTACTCTAAGGCCGTCGAAGCACATAAGTAATTCCTCAACAGG 3295
|||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct 3139 CACGAGTCATGGGAGTTTTACTCTAAGGTCGTCGAGGCATATAAGTAATTCCTCCACAGG 3198
Query 3296 AGTT 3299
||||
Sbjct 3199 AGTT 3202
Score = 353 bits (191), Expect = 4e-96
Identities = 251/280 (90%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 882 CTGAAGCTGAAGGATCAAGATCGATGAGTATAGAGGAAAACTCCGTTGCTAGTGTTTTGA 941
||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||
Sbjct 1082 CTGAAGCTGAAGGATCAAGATCGATGACTAAAGAGGAAAAATCCGCTGCTAGTGTTTTGA 1141
Query 942 TAAATGGTTGTCTGAAATCCAAGGTTGATACAGTGGAACAACTAGATG-GCACAGATGTT 1000
||||| |||||| ||||||||||| ||||||||||||||||| ||| | ||||||||| |
Sbjct 1142 TAAATAGTTGTCCGAAATCCAAGGATGATACAGTGGAACAACAAGA-GTGCACAGATG-T 1199
Query 1001 CAAA-TCAATGAAACTGTCTTCCAAACTCAGAGTACTAAAGCCAAGAAAAGGAAGAAGaa 1059
|||| ||||||||||||| |||||| ||||| | |||||||||||| |||||||||||
Sbjct 1200 CAAACTCAATGAAACTGTGGTCCAAATTCAGAATCCTAAAGCCAAGAGAAGGAAGAAGAG 1259
Query 1060 aaaaaCCAAAACAATGGAGGCCTGTGATCCATTAGGAAATACTCTGCCGACCTCCACGGA 1119
||| || |||||| |||||| |||||| || |||||||||||| || | ||||||||| |
Sbjct 1260 AAAGACTAAAACATTGGAGGACTGTGACCCGTTAGGAAATACTTTGTCAACCTCCACGAA 1319
Query 1120 AAGCGGGCCAGTAGAGTGTGTGGAAAATAATGATGGGAAT 1159
||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAGCGGGCCAGTAGAGTGTGTGGAAAATAATGATGGGAAT 1359
Score = 93.5 bits (50), Expect = 1e-17
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2759 AGTTTTCTCGACTTTTGCTTTGAGAGATTTGATGTTGCGATATGGTCTTCCAGACG 2814
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2601 AGTTTTCTCGACTTTTGCTTTGAGAGATTTCATGTTGCGATATGGTCCTCCAGACG 2656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132935102489
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5