BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26200.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492192 jgi|Araly1|492192|fgenesh2_kg.7__1625__AT4G26200.1 2527 0.0
Ahg327275 jgi|Araly1|327275|fgenesh1_pm.C_scaffold_6002495 86.1 7e-16
> Ahg492192 jgi|Araly1|492192|fgenesh2_kg.7__1625__AT4G26200.1
Length=1575
Score = 2527 bits (1368), Expect = 0.0
Identities = 1507/1576 (96%), Gaps = 2/1576 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCTTCCTCTAATGATGGAGAGATCATCAAACAACAACAACGTCGAGCTTTCTCGA 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGTCTTCCTCTAATGATGGAGAGATCATCAAACAACAACGTTGTCGAGCTTTCTCGA 60
Query 61 GTGGCGGTTTCAGACACTCACGGCGAAGACTCACCGTACTTCGCCGGCTGGAAAGCTTAC 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGCGGTTTCAGACACTCACGGCGAAGACTCACCGTACTTCGCCGGCTGGAAAGCTTAC 120
Query 121 GACGAAAATCCTTACGACGAATCTCATAACCCTTCCGGTGTCATCCAAATGGGTCTCGCT 180
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GATGAAAACCCTTACGACGAATCTCATAACCCTTCCGGTGTCATTCAAATGGGTCTCGCT 180
Query 181 GAGAATCAGGTCTCGTTTGATCTTCTTGAAACTTACTTGGAGAAGAAGAATCCAGAAGGT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GAGAATCAGGTCTCGTTTGATCTTCTTGAAACTTACTTGGAGAAAAAGAATCCAGAAGGT 240
Query 241 TCGATGTGGGGATCAAAAGGAGCTCCTGGGTTCCGTGAAAACGCATTGTTTCAAGACTAC 300
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 241 TCGATGTGGGGATCAAAAGGAGCACCTGGGTTCCGTGAAAACGCACTGTTCCAAGACTAC 300
Query 301 CACGGTCTCAAAACTTTCAGACAAGCCATGGCTAGTTTCATGGAACAGATTCGAGGAGGC 360
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 301 CACGGTCTCAAAACTTTCAGACAAGCCATGGCTAGCTTCATGGAGCAGATTCGAGGAGGT 360
Query 361 AAAGCTAGATTTGATCCTGACCGGATCGTCCTCACCGCCGGAGCCACCGCCGCTAACGAA 420
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AAAGCTAGATTCGATCCTGACCGGATCGTCCTCACCGCCGGAGCCACGGCCGCTAACGAA 420
Query 421 CTCTTAACTTTCATTCTCGCCGATCCTAACGACGCCCTTCTAGTTCCCACACCGTATTAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCTTAACTTTCATTCTCGCCGATCCTAACGACGCCCTTCTAGTTCCCACACCGTATTAT 480
Query 481 CCAGGATTCGATAGAGATTTGAGATGGAGAACCGGAGTGAAAATAGTACCCATCCACTGC 540
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 481 CCAGGATTCGATAGAGATTTGAGATGGAGAACCGGAGTAAAAATAGTACCGATCCATTGC 540
Query 541 GACAGCTCGAACCATTTCCAGATAACCCCGGAGGCGCTAGAGTCGGCGTACCAAACGGCT 600
|||||||||||||||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct 541 GACAGCTCGAACCATTTCGAGATAACCCCGGAGGCGCTTGAGTCGGCGTACCAGACAGCT 600
Query 601 CGTGACGCGAACATTAGAGTCCGAGGAGTGCTCATAACCAACCCATCGAACCCATTAGGG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGTGACGCGAACATTAGAGTCCGAGGAGTGCTCATAACCAACCCATCGAACCCATTAGGC 660
Query 661 GCGACGGTCCAAAAGAAGGTTCTAGAAGATCTCCTTGACTTCTGCGTACGCAAGAATATT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GCGACGGTCCAAAAGAAGGTTCTAGAAGATCTCCTTGACTTCTGCGTACGCAAGAACATT 720
Query 721 CACTTGGTCTCAGACGAGATCTACTCCGGCTCCGTCTTCCATGCCTCCGAGTTCACAAGC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CACTTGGTCTCAGACGAGATCTACTCCGGCTCCGTCTTCCATGCCTCCGAGTTCACCAGC 780
Query 781 GTTGCCGAGATCGTAGAAAACATAGATGACGTGTCAGTAAAGGAACGAGTTCACATCGTC 840
||||||||||||||||| | ||| |||||||||||||| |||||||| || |||||||||
Sbjct 781 GTTGCCGAGATCGTAGAGAGCATCGATGACGTGTCAGTCAAGGAACGTGTCCACATCGTC 840
Query 841 TACAGTCTCTCCAAGGATCTTGGTCTTCCTGGTTTCCGCGTGGGAACTATATACTCGTAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 TACAGTCTCTCCAAGGATCTTGGTCTTCCTGGTTTCCGCGTGGGAACTATATATTCGTAC 900
Query 901 AACGATAATGTTGTTCGGACAGCGAGAAGGATGTCGAGCTTCACGCTTGTCTCGTCTCAG 960
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AACGACAATGTTGTGCGGACAGCGAGAAGGATGTCGAGCTTCACGCTTGTCTCGTCTCAG 960
Query 961 ACACAACATATGCTGGCTTCTATGTTGTCGGATGAGGAGTTTACGGAGAAGTACATTAGG 1020
|||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 961 ACACAACACATGTTGGCTTCTATGTTGTCGGATGAGGAATTTACGGACAAGTACATTAGG 1020
Query 1021 ATAAACCGGGAAAGACTTAGAAGACGGTACGATACCATTGTGGAAGGGCTTAAGAAGGCA 1080
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1021 ATAAACCGGGAAAGACTTAGAAGACGGTACGAGATCATTGTGGAAGGGCTTAAGAAGGCA 1080
Query 1081 GGGATTGAGTGTTTGAAAGGGAACGCAGGGCTATTTTGTTGGATGAATTTGGGTTTCTTG 1140
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGGATTGAGTGTTTGAAGGGGAACGCAGGGCTATTTTGTTGGATGAATTTGGGTTTCTTG 1140
Query 1141 CTCGAAAAGAAAACTAAAGACGGCGAGCTCCAGCTTTGGGATGTGATCTTAAAGGAGCTG 1200
|| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1141 CTGGAAAAGAAAACTAAAGACGGTGAGCTACAGCTTTGGGATGTGATCTTGAAGGAGCTG 1200
Query 1201 AACCTGAATATATCTCCGGGATCTTCGTGCCACTGCTCGGAGGTCGGATGGTTTAGGGTT 1260
|| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 AAGCTGAATATATCTCCTGGAACTTCGTGTCACTGCTCGGAGGTCGGATGGTTTAGGGTT 1260
Query 1261 TGTTTTGCTAATATGAGTGAGAACACTTTGGAGATTGCGTTGAAGAGAATACATGAGTTC 1320
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGTTTTGCTAATATGAGTGAAAACACTTTGGAGATTGCGTTGAAGAGAATACATGAGTTC 1320
Query 1321 ATGGACCGACGAAGGAGGTTTTGAAATGTTaaaaaaaaaaGTAAAGTAAATCCGtttttt 1380
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1321 ATGGACCGACGAAGGAGGTTTTGAAATGAAAAAAAAAAAAGTAAAGTAAATCCCTTTTTT 1380
Query 1381 tGGTGGTTAAATATATGGGGGAGGGGTAATTAATTTTTTAGGAAAGAGAAGATAATTAAT 1440
|||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1381 TGGTGGTTAA-TATATGGGGGAGGGAAAATTAATTTTTTAGGAAGGAGAAGATGATTAAT 1439
Query 1441 TTAAACCCATTGATGTAAAATGGGTTTTGATTTGTTTCTCTTTTCTAGATATTATTGTTT 1500
| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGAAAATCATTGATGAAAAATGGGTTTTGATTTGTTTCTCTTTTCTAGATATTATTGTTT 1499
Query 1501 GTTTTCTTGCTT-GGACAAAGCAAGTTAATTTCATGTTCATCAAGGTTGATTTGTAATAT 1559
|||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1500 GTTTTCTTGCTTTGGACGAAGCAAGTTAATTTCATACTCATCAAGGTTGATCTGTAATAT 1559
Query 1560 TTATTGTTATAAACGA 1575
|| |||||||||||||
Sbjct 1560 TTGTTGTTATAAACGA 1575
> Ahg327275 jgi|Araly1|327275|fgenesh1_pm.C_scaffold_6002495
Length=1488
Score = 86.1 bits (46), Expect = 7e-16
Identities = 59/65 (91%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 458 TTC-TAGTTCCCACACCGTATTATCCAGGATTCGATAGAGATTTGAGATGGAGAACCGGA 516
||| ||||||| || || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 445 TTCTTAGTTCCGACTCCTTATTATCCAGGGTTTGATAGAGATTTGAGATGGAGAACCGGA 504
Query 517 GTGAA 521
|||||
Sbjct 505 GTGAA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5