BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26200.1 Length=1586 Score E Sequences producing significant alignments: (Bits) Value Ahg492192 jgi|Araly1|492192|fgenesh2_kg.7__1625__AT4G26200.1 2527 0.0 Ahg327275 jgi|Araly1|327275|fgenesh1_pm.C_scaffold_6002495 86.1 7e-16 > Ahg492192 jgi|Araly1|492192|fgenesh2_kg.7__1625__AT4G26200.1 Length=1575 Score = 2527 bits (1368), Expect = 0.0 Identities = 1507/1576 (96%), Gaps = 2/1576 (0%) Strand=Plus/Plus Query 1 ATGGGTCTTCCTCTAATGATGGAGAGATCATCAAACAACAACAACGTCGAGCTTTCTCGA 60 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGGTCTTCCTCTAATGATGGAGAGATCATCAAACAACAACGTTGTCGAGCTTTCTCGA 60 Query 61 GTGGCGGTTTCAGACACTCACGGCGAAGACTCACCGTACTTCGCCGGCTGGAAAGCTTAC 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTTGCGGTTTCAGACACTCACGGCGAAGACTCACCGTACTTCGCCGGCTGGAAAGCTTAC 120 Query 121 GACGAAAATCCTTACGACGAATCTCATAACCCTTCCGGTGTCATCCAAATGGGTCTCGCT 180 || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 GATGAAAACCCTTACGACGAATCTCATAACCCTTCCGGTGTCATTCAAATGGGTCTCGCT 180 Query 181 GAGAATCAGGTCTCGTTTGATCTTCTTGAAACTTACTTGGAGAAGAAGAATCCAGAAGGT 240 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 GAGAATCAGGTCTCGTTTGATCTTCTTGAAACTTACTTGGAGAAAAAGAATCCAGAAGGT 240 Query 241 TCGATGTGGGGATCAAAAGGAGCTCCTGGGTTCCGTGAAAACGCATTGTTTCAAGACTAC 300 ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| Sbjct 241 TCGATGTGGGGATCAAAAGGAGCACCTGGGTTCCGTGAAAACGCACTGTTCCAAGACTAC 300 Query 301 CACGGTCTCAAAACTTTCAGACAAGCCATGGCTAGTTTCATGGAACAGATTCGAGGAGGC 360 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 301 CACGGTCTCAAAACTTTCAGACAAGCCATGGCTAGCTTCATGGAGCAGATTCGAGGAGGT 360 Query 361 AAAGCTAGATTTGATCCTGACCGGATCGTCCTCACCGCCGGAGCCACCGCCGCTAACGAA 420 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 AAAGCTAGATTCGATCCTGACCGGATCGTCCTCACCGCCGGAGCCACGGCCGCTAACGAA 420 Query 421 CTCTTAACTTTCATTCTCGCCGATCCTAACGACGCCCTTCTAGTTCCCACACCGTATTAT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTCTTAACTTTCATTCTCGCCGATCCTAACGACGCCCTTCTAGTTCCCACACCGTATTAT 480 Query 481 CCAGGATTCGATAGAGATTTGAGATGGAGAACCGGAGTGAAAATAGTACCCATCCACTGC 540 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 481 CCAGGATTCGATAGAGATTTGAGATGGAGAACCGGAGTAAAAATAGTACCGATCCATTGC 540 Query 541 GACAGCTCGAACCATTTCCAGATAACCCCGGAGGCGCTAGAGTCGGCGTACCAAACGGCT 600 |||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||| Sbjct 541 GACAGCTCGAACCATTTCGAGATAACCCCGGAGGCGCTTGAGTCGGCGTACCAGACAGCT 600 Query 601 CGTGACGCGAACATTAGAGTCCGAGGAGTGCTCATAACCAACCCATCGAACCCATTAGGG 660 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGTGACGCGAACATTAGAGTCCGAGGAGTGCTCATAACCAACCCATCGAACCCATTAGGC 660 Query 661 GCGACGGTCCAAAAGAAGGTTCTAGAAGATCTCCTTGACTTCTGCGTACGCAAGAATATT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 661 GCGACGGTCCAAAAGAAGGTTCTAGAAGATCTCCTTGACTTCTGCGTACGCAAGAACATT 720 Query 721 CACTTGGTCTCAGACGAGATCTACTCCGGCTCCGTCTTCCATGCCTCCGAGTTCACAAGC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 CACTTGGTCTCAGACGAGATCTACTCCGGCTCCGTCTTCCATGCCTCCGAGTTCACCAGC 780 Query 781 GTTGCCGAGATCGTAGAAAACATAGATGACGTGTCAGTAAAGGAACGAGTTCACATCGTC 840 ||||||||||||||||| | ||| |||||||||||||| |||||||| || ||||||||| Sbjct 781 GTTGCCGAGATCGTAGAGAGCATCGATGACGTGTCAGTCAAGGAACGTGTCCACATCGTC 840 Query 841 TACAGTCTCTCCAAGGATCTTGGTCTTCCTGGTTTCCGCGTGGGAACTATATACTCGTAC 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 841 TACAGTCTCTCCAAGGATCTTGGTCTTCCTGGTTTCCGCGTGGGAACTATATATTCGTAC 900 Query 901 AACGATAATGTTGTTCGGACAGCGAGAAGGATGTCGAGCTTCACGCTTGTCTCGTCTCAG 960 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AACGACAATGTTGTGCGGACAGCGAGAAGGATGTCGAGCTTCACGCTTGTCTCGTCTCAG 960 Query 961 ACACAACATATGCTGGCTTCTATGTTGTCGGATGAGGAGTTTACGGAGAAGTACATTAGG 1020 |||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 961 ACACAACACATGTTGGCTTCTATGTTGTCGGATGAGGAATTTACGGACAAGTACATTAGG 1020 Query 1021 ATAAACCGGGAAAGACTTAGAAGACGGTACGATACCATTGTGGAAGGGCTTAAGAAGGCA 1080 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1021 ATAAACCGGGAAAGACTTAGAAGACGGTACGAGATCATTGTGGAAGGGCTTAAGAAGGCA 1080 Query 1081 GGGATTGAGTGTTTGAAAGGGAACGCAGGGCTATTTTGTTGGATGAATTTGGGTTTCTTG 1140 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GGGATTGAGTGTTTGAAGGGGAACGCAGGGCTATTTTGTTGGATGAATTTGGGTTTCTTG 1140 Query 1141 CTCGAAAAGAAAACTAAAGACGGCGAGCTCCAGCTTTGGGATGTGATCTTAAAGGAGCTG 1200 || |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 1141 CTGGAAAAGAAAACTAAAGACGGTGAGCTACAGCTTTGGGATGTGATCTTGAAGGAGCTG 1200 Query 1201 AACCTGAATATATCTCCGGGATCTTCGTGCCACTGCTCGGAGGTCGGATGGTTTAGGGTT 1260 || |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1201 AAGCTGAATATATCTCCTGGAACTTCGTGTCACTGCTCGGAGGTCGGATGGTTTAGGGTT 1260 Query 1261 TGTTTTGCTAATATGAGTGAGAACACTTTGGAGATTGCGTTGAAGAGAATACATGAGTTC 1320 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TGTTTTGCTAATATGAGTGAAAACACTTTGGAGATTGCGTTGAAGAGAATACATGAGTTC 1320 Query 1321 ATGGACCGACGAAGGAGGTTTTGAAATGTTaaaaaaaaaaGTAAAGTAAATCCGtttttt 1380 |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1321 ATGGACCGACGAAGGAGGTTTTGAAATGAAAAAAAAAAAAGTAAAGTAAATCCCTTTTTT 1380 Query 1381 tGGTGGTTAAATATATGGGGGAGGGGTAATTAATTTTTTAGGAAAGAGAAGATAATTAAT 1440 |||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||| Sbjct 1381 TGGTGGTTAA-TATATGGGGGAGGGAAAATTAATTTTTTAGGAAGGAGAAGATGATTAAT 1439 Query 1441 TTAAACCCATTGATGTAAAATGGGTTTTGATTTGTTTCTCTTTTCTAGATATTATTGTTT 1500 | ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 TGAAAATCATTGATGAAAAATGGGTTTTGATTTGTTTCTCTTTTCTAGATATTATTGTTT 1499 Query 1501 GTTTTCTTGCTT-GGACAAAGCAAGTTAATTTCATGTTCATCAAGGTTGATTTGTAATAT 1559 |||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct 1500 GTTTTCTTGCTTTGGACGAAGCAAGTTAATTTCATACTCATCAAGGTTGATCTGTAATAT 1559 Query 1560 TTATTGTTATAAACGA 1575 || ||||||||||||| Sbjct 1560 TTGTTGTTATAAACGA 1575 > Ahg327275 jgi|Araly1|327275|fgenesh1_pm.C_scaffold_6002495 Length=1488 Score = 86.1 bits (46), Expect = 7e-16 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 458 TTC-TAGTTCCCACACCGTATTATCCAGGATTCGATAGAGATTTGAGATGGAGAACCGGA 516 ||| ||||||| || || ||||||||||| || ||||||||||||||||||||||||||| Sbjct 445 TTCTTAGTTCCGACTCCTTATTATCCAGGGTTTGATAGAGATTTGAGATGGAGAACCGGA 504 Query 517 GTGAA 521 ||||| Sbjct 505 GTGAA 509 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59420782200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5