BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26210.1
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354168 jgi|Araly1|354168|fgenesh1_pg.C_scaffold_7001341 555 2e-157
Ahg480503 jgi|Araly1|480503|fgenesh2_kg.3__3204__AT2G19680.1 257 7e-68
> Ahg354168 jgi|Araly1|354168|fgenesh1_pg.C_scaffold_7001341
Length=369
Score = 555 bits (300), Expect = 2e-157
Identities = 347/370 (94%), Gaps = 2/370 (1%)
Strand=Plus/Plus
Query 109 ATGGCATCAAAGTTGCTACAATTGAAATCCAAGGCATGTGAAGCATCAAAGTTTGTTTCC 168
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1 ATGGCATCGAAGTTGCTACAATTGAAATCCAAGGCCTGTGAAGCATCGAAGTTTGTGTCG 60
Query 169 AAGCATGGAACAACTTACTACAAACAGTTGCTGGATAAGAACAAG-ATGTATATCCAGGA 227
||||| || |||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 61 AAGCACGGCACAACTTACTACAAACAGTTGCTGGAGAAGAACAAGCA-GTATATCCAGGA 119
Query 228 GCCAGCTACTATAGAGAAATGCAATGAATTGTCTAAGCAGCTTCTCTACACTCGTCTTGC 287
|||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 120 GCCAGCCACTGTAGAGAAATGCAATGAGTTGTCTAAGCAGCTTCTTTACACTCGTCTTGC 179
Query 288 TAGCATTCCTGGGCGTTCTGAGTCATTTTGGAAGGAAGTCAATCACGTGAAGGGTTTATG 347
|||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct 180 GAGCATTCCTGGGCGTTATGAGTCATTTTGGAAGGAAGTCGATCACGTGAAGGGCTTATG 239
Query 348 GAAGAATCGGGCGGATTTGAAGGTTGAAGATGCTGGAATAGCTGCACTTTTTGGTCTGGA 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 240 GAAGAATCGGGCGGATTTGAAGGTTGAAGATGCTGGAATAGCTGCACTTTTTGGTTTAGA 299
Query 408 ATGCTTTGCGTGGTACTGTGCAGGAGAGATTGTAGGAAGGGGCTTCACTTTCACCGGCTA 467
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 300 ATGCTTTGCTTGGTACTGTGCTGGAGAGATCGTAGGAAGGGGCTTCACTTTCACCGGCTA 359
Query 468 CTACCCTTGA 477
||||||||||
Sbjct 360 CTACCCTTGA 369
> Ahg480503 jgi|Araly1|480503|fgenesh2_kg.3__3204__AT2G19680.1
Length=599
Score = 257 bits (139), Expect = 7e-68
Identities = 303/380 (80%), Gaps = 20/380 (5%)
Strand=Plus/Plus
Query 109 ATGGCATCAAAGTTGCTACAA-TTGAAATCCAAGGCATGTGAAGCATCAAAGTTTGTTTC 167
||||||||||| ||| ||||| || |||| ||||||||| | || ||||||||||| |
Sbjct 25 ATGGCATCAAAATTGGTACAACTT-CAATCAAAGGCATGTCAGGCTTCAAAGTTTGTGGC 83
Query 168 CAAGCAT-GGAACAACTTACTACAAACAGTTGCTGGATAAGAACAAG--ATGTATATCCA 224
||||||| |||| ||||||| || || ||| |||| |||||||| || | | ||
Sbjct 84 CAAGCATGGGAA-TTCTTACTATAAGCAATTGTTGGAGCAGAACAAGCAAT-T-CGTTCA 140
Query 225 GGAGCCAGCTACTATAGAGAAATGCAATGAATTGTCTAAGCAGCTT-CTCTACACTCGTC 283
||||| || ||| ||||||| |||| ||||||||||||||| || |||||||||||||
Sbjct 141 AGAGCCTGCAACTGTAGAGAAGTGCAGTGAATTGTCTAAGCA-ATTGCTCTACACTCGTC 199
Query 284 TTGCTAGCATTCCTGGGCGTTCTGAGTCATTTTGGAAGGAAGTCA-ATC-ACGTGAAGGG 341
||||||||||||| ||||||| ||| |||||||||| ||||| | | | | | |||
Sbjct 200 TTGCTAGCATTCCCGGGCGTTATGAAACATTTTGGAAAGAAGT-AGA-CTATGCAAAGAA 257
Query 342 TTTATGGAAGAATC-GGGCGGATTTGAAGGTTGAAGATGCTGGAATAGCTGCACTT-TTT 399
|||| |||||| | | ||| || ||||||| |||||||| ||||| |||||| || |||
Sbjct 258 CTTATTGAAGAA-CAGAGCGAATCTGAAGGTGGAAGATGCAGGAATCGCTGCA-TTGTTT 315
Query 400 GGTC-TGGAATGCTTTGCGTGGTACTGTGCAGGAGAGATTGTAGGAAGGGGCTTCACTTT 458
|| | | ||||||||||| |||| || ||||| || || || || || || ||||||||
Sbjct 316 GG-CTTAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGAGGTTTCACTTT 374
Query 459 CACCGGCTACTACCCTTGAA 478
||||||||||||||||||||
Sbjct 375 CACCGGCTACTACCCTTGAA 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28058466912
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5