BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26220.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945453 jgi|Araly1|945453|scaffold_701682.1 1088 0.0
> Ahg945453 jgi|Araly1|945453|scaffold_701682.1
Length=759
Score = 1088 bits (589), Expect = 0.0
Identities = 653/685 (95%), Gaps = 0/685 (0%)
Strand=Plus/Plus
Query 189 CCAAGGGATTGCTGAAAAGTGAAGAGCTCTATAAATATATACTGGAGACTAGTGTGTACC 248
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 57 CCAAGGGATTGCTGAAAAGTGAAGAGCTCTATAAATATATACTGGAGACCAGTGTGTACC 116
Query 249 CACGCGAGCCAGAGGTTCTCAGGGAGCTTAGGAACATTACTCATAACCACCCTCAAGCTG 308
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 CACGCGAGCCGGAGGTTCTCAAGGAGCTTAGGAACATTACTCATAACCACCCTCAAGCTG 176
Query 309 GTATGGCTACTGCACCAGACGCTGGCCAGTTGATGGGGATGCTGCTGAATCTGGTAAATG 368
| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 177 GGATGGCTACTGCACCGGACGCTGGCCAGTTGATGGGGATGCTGCTTAAACTGGTAAATG 236
Query 369 CAAGAAAGACTATCGAGGTTGGGGTTTTCACTGGATACTCTCTTCTCCTCACTGCTCTTA 428
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 237 CAAGAAAGACTATCGAGGTCGGGGTTTTTACTGGATACTCTCTTCTCCTCACTGCTCTTA 296
Query 429 CGCTACCAGAAGATGGCAAGGTTATCGCCATTGACATGAATAGAGACTCGTATGAAATAG 488
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 297 CATTACCAGAAGATGGCAAGGTTATTGCCATTGATGTGAATAGAGACTCGTATGAAATAG 356
Query 489 GATTGCCGGTTATAAAGAAAGCTGGTGTTGAACACAAAATTGATTTCAAAGAGTCTGAAG 548
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 357 GATTGCCGGTTATAAAGAAAGTTGGTGTTGAACACAAAATTGATTTCAGAGAGTCTGAAG 416
Query 549 CTCTTCCAGCCCTCGACGAGCTTTTAAACAATAAAGTGAATGAGGGTGGATTCGACTTCG 608
||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||
Sbjct 417 CTCTTCCAGCCCTCGACGAGCTTTTAAACGATAAAGCGAATGAGGGTGGGTTCGATTTCG 476
Query 609 CATTTGTGGATGCAGACAAGCTGAATTATTGGAACTATCATGAGAGGCTTATTAGATTGA 668
|||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||
Sbjct 477 CATTTGTGGATGCAGACAAGGTGAACTATTGGAACTACCATGAGAGGCTTATTAGACTGA 536
Query 669 TCAAGGTTGGTGGGATCATAGTGTATGATAACACTCTCTGGGGAGGATCAGTTGCTGAAC 728
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 537 TCAAGGTTGGTGGGATAATAGTGTATGACAACACTCTCTGGGGAGGATCAGTTGCTGAGC 596
Query 729 CGGACTCGTCCACGCCCGAGTGGAGGATAGAAGTCAAGAAAGCAACCCTCGAGCTGAACA 788
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 597 CAGACTCGTCCACGCCCGAGTGGAGGATAGAAATCAAGAAAGCAACCCTCGAGCTGAACA 656
Query 789 AGAAACTCTCGGCTGATCAGCGTGTGCAGATCTCGCAAGCTGCGCTTGGCGATGGTATCA 848
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 657 AGAAACTCTCGGCTGATAAGCGTGTGCAGATCTCGCAAGCTGCGCTTGGCGATGGAATCA 716
Query 849 CTATTTGCAGGAGGTTATATTGAGC 873
||||||||||||| |||||||||||
Sbjct 717 CTATTTGCAGGAGATTATATTGAGC 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5