BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26230.1
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492190 jgi|Araly1|492190|fgenesh2_kg.7__1623__AT4G26230.1 671 0.0
Ahg931417 jgi|Araly1|931417|scaffold_303874.1 375 2e-103
> Ahg492190 jgi|Araly1|492190|fgenesh2_kg.7__1623__AT4G26230.1
Length=550
Score = 671 bits (363), Expect = 0.0
Identities = 417/443 (94%), Gaps = 4/443 (1%)
Strand=Plus/Plus
Query 3 TCTCCGTCACCACCGGCTCTGTATTTCGGCATTTGTggagagaagaaggtaaagagaga- 61
|||| ||||||||||||||||||||||||| || ||||||||| ||||||| || || |
Sbjct 1 TCTCTGTCACCACCGGCTCTGTATTTCGGCGTTCGTGGAGAGACGAAGGTACAG-GA-AC 58
Query 62 agat-agaaacataaaatgtcggagaagaagggaaggaaagaggaggTGGTGACCAGAGA 120
| || ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 59 ATATAAGAGACACAAAATGTCGGAGAAGAAGGGAAGGAAAGAAGAGGTGGTGACCAGAGA 118
Query 121 GTACACCATCAACCTTCACAGACGCCTTCATAGCTGTACCTTTAAGAAGAAGGCTCCAAA 180
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 GTACACCATCAATCTCCACAGACGTCTTCATAGCTGTACCTTTAAGAAGAAGGCTCCAAA 178
Query 181 GGCGATCAAGGAGATAAGGAAGTTTGCTGAGAAGGAAATGGGGACAAAGGATGTGAGAGT 240
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 TGCAATCAAGGAGATAAGGAAGTTTGCTGAGAAGGCAATGGGGACAAAGGATGTGAGAGT 238
Query 241 GGATGTTAAATTGAACAAGCAGATTTGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAAT 300
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 GGATGTCAAATTGAACAAGCAGATTTGGAGCAAAGGTATCAGAGGTCCTCCTAGGAGAAT 298
Query 301 CAGAGTCCGAGTTGCTCGTAAGAGAAATGATGATGAAGATGCAAAGGAAGAGTTCTTCTC 360
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 299 CAGAGTCCGAGTTGCTCGTAAGAGAAACGATGACGAAGATGCAAAGGAAGAGTTCTTCTC 358
Query 361 TCTTGTCACTGTTGCTGAAATCCCTGCTGAAGGACTCTCTGGCCTCGGCACTAAGATCAT 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 359 TCTTGTCACTGTTGCTGAAATCCCTGCTGAAGGACTCTCTGGCCTTGGCACTAAGGTCAT 418
Query 421 TGAAGAAGAGGATTAAACTATCT 443
|||||||||||||| ||||||||
Sbjct 419 TGAAGAAGAGGATTGAACTATCT 441
> Ahg931417 jgi|Araly1|931417|scaffold_303874.1
Length=400
Score = 375 bits (203), Expect = 2e-103
Identities = 300/347 (86%), Gaps = 6/347 (2%)
Strand=Plus/Plus
Query 89 aagggaaggaaa-gaggaggTGGTGACCAGAGAGTACACCATCAACCTTCACAGACGCCT 147
||||||| |||| |||||||| || |||||||||||||| ||||| |||||||| |||||
Sbjct 33 AAGGGAA-GAAAGGAGGAGGTCGTTACCAGAGAGTACACTATCAATCTTCACAGGCGCCT 91
Query 148 TCATAGCTGTACCTTTAAGAAGAAGGCTCCAAAGGCGATCAAGGAGATAAGGAAGTTTGC 207
||||||||||| || ||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 92 CCATAGCTGTACGTTCAAGAAGAAGGCACCCAATGCCATCAAAGAGATCAGGAAGTTTGC 151
Query 208 --TGAGAAGGAAATGGGGACAAAGGATGTGAGAGTGGATGTTAAATTGAACAAGCAGATT 265
||| || | |||||| |||||||| || ||||| ||||||||| | |||||||||||
Sbjct 152 ATTGA-AA-GCAATGGGAACAAAGGACGTTAGAGTCGATGTTAAACTCAACAAGCAGATA 209
Query 266 TGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAATCAGAGTCCGAGTTGCTCGTAAGAGA 325
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 210 TGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAATCAGAGTCCGTGTTGCCCGTAAGAGG 269
Query 326 AATGATGATGAAGATGCAAAGGAAGAGTTCTTCTCTCTTGTCACTGTTGCTGAAATCCCT 385
|| |||||||||||||| ||||||||||| ||||| || |||||||| ||||| || ||
Sbjct 270 AACGATGATGAAGATGCCAAGGAAGAGTTTTTCTCACTCGTCACTGTCGCTGAGATTCCG 329
Query 386 GCTGAAGGACTCTCTGGCCTCGGCACTAAGATCATTGAAGAAGAGGA 432
||||||||| | ||||| | || |||||| ||||||||||||||||
Sbjct 330 GCTGAAGGATTGTCTGGTTTGGGTACTAAGGTCATTGAAGAAGAGGA 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24741773133
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5