BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26240.1 Length=909 Score E Sequences producing significant alignments: (Bits) Value Ahg945451 jgi|Araly1|945451|scaffold_701680.1 979 0.0 > Ahg945451 jgi|Araly1|945451|scaffold_701680.1 Length=641 Score = 979 bits (530), Expect = 0.0 Identities = 601/636 (94%), Gaps = 2/636 (0%) Strand=Plus/Plus Query 55 TGCAATCTGAAGAAAAATCAAATGAAGAAGTTAGCGAGAAAATGGCGGAGAACTCGTCGT 114 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 TGCAATCTGAAGAAAAATCAAATGAAGAAGTTAGCGAGAAAATGGCGAAGAACTCGTCGC 60 Query 115 GACGAAGATGATGATAAGTTCGTCCTTCCTACTTCTGAAGACGTCGATTCTCGGCCTATT 174 || |||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 61 GATGAAGATGATGATAAGTTCGTCCTTCCTACTTCCGACGACGTCGATTCTCGGCCTATC 120 Query 175 GATACGCAAGAGCAGGAGGAGTACGTTCGGTATCTTGAGGAAGCTCATGCTCAGCAAAGT 234 |||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||| Sbjct 121 GATACGCAAGAGCAAGAAGAGTACGTTAGGTCGCTTGAGGAAGCTCATGCTCAGCAAAGT 180 Query 235 CTTCAATGGAGGAGCGTGTTTGTGGTTCTTCTGATCTGCTTTGGAGCTTTCCTCTTCTAC 294 | ||||||||||| ||||| |||||||| |||||||||| ||||||||| ||||||||| Sbjct 181 CGGCAATGGAGGAGTGTGTTCGTGGTTCTCCTGATCTGCTATGGAGCTTTTCTCTTCTAC 240 Query 295 TCCATTTTCCAGCAGTTCATGTCACCATGGGAACTGCGGTATCATGCCTACTTTATGGAA 354 || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 TCTATTTTTCAGCAGTTCATGTCACCATGGGAACTGCGGTATCATGCCTACTTCATGGAA 300 Query 355 GATCTCAAGTCATGGATGGTCATTTCAGCTGAGTGGATCGCTATCATGGCTTGCTCCCTC 414 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 301 GATCTCAAGTCATGGATGGTCATTTCAGCTGAGTGGATCGCTATCATGACTTGCTGCCTC 360 Query 415 TCCATTGTCGGGCTACGAGATAAGAAGAATGATCATAGACGATGGTTCTGGTACTCTTGT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 361 TCCATTGTCGGGCTACGAGATAAGAAGAATGATCATAGACGATGGTTCTGGTACTCATGT 420 Query 475 GTTGTTGGATCTGCATTGACCATCTTTTGGCTTTATTACTTGCTGAGGCTTCCGAAATTC 534 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 421 GTTGTTGGATCTGCATTGACCATCTTTTGGCTTTATTACTTACTGAGGCTTCCGAAATTC 480 Query 535 CGGTGGGATGCTATCTGGCTTCCGTTTGGGCCGCTTTGTGGAGCTGGAATTTGTCTATAC 594 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGATGGGATGCTATCTGGCTTCCGTTTGGGCCGCTTTGTGGAGCTGGAATTTGTCTATAC 540 Query 595 GTGGACCATCTTCTAGAGGAGTCATCTGAGGAAGTGAAAAAACTGAGGAACTATATGTAT 654 ||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct 541 GTGGACCATCTACTAGAGGAATCATCTGAGGAAGTGAAAAAATTAAGGAACTATATGTAT 600 Query 655 GCATATAAAGCACGGTAGAGAGATAATAGCTACTTT 690 |||||||||||| |||||||| | || |||||||| Sbjct 601 GCATATAAAGCAAGGTAGAGA--TGATCGCTACTTT 634 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33700658628 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5