BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26240.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945451 jgi|Araly1|945451|scaffold_701680.1 979 0.0
> Ahg945451 jgi|Araly1|945451|scaffold_701680.1
Length=641
Score = 979 bits (530), Expect = 0.0
Identities = 601/636 (94%), Gaps = 2/636 (0%)
Strand=Plus/Plus
Query 55 TGCAATCTGAAGAAAAATCAAATGAAGAAGTTAGCGAGAAAATGGCGGAGAACTCGTCGT 114
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TGCAATCTGAAGAAAAATCAAATGAAGAAGTTAGCGAGAAAATGGCGAAGAACTCGTCGC 60
Query 115 GACGAAGATGATGATAAGTTCGTCCTTCCTACTTCTGAAGACGTCGATTCTCGGCCTATT 174
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 61 GATGAAGATGATGATAAGTTCGTCCTTCCTACTTCCGACGACGTCGATTCTCGGCCTATC 120
Query 175 GATACGCAAGAGCAGGAGGAGTACGTTCGGTATCTTGAGGAAGCTCATGCTCAGCAAAGT 234
|||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||
Sbjct 121 GATACGCAAGAGCAAGAAGAGTACGTTAGGTCGCTTGAGGAAGCTCATGCTCAGCAAAGT 180
Query 235 CTTCAATGGAGGAGCGTGTTTGTGGTTCTTCTGATCTGCTTTGGAGCTTTCCTCTTCTAC 294
| ||||||||||| ||||| |||||||| |||||||||| ||||||||| |||||||||
Sbjct 181 CGGCAATGGAGGAGTGTGTTCGTGGTTCTCCTGATCTGCTATGGAGCTTTTCTCTTCTAC 240
Query 295 TCCATTTTCCAGCAGTTCATGTCACCATGGGAACTGCGGTATCATGCCTACTTTATGGAA 354
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TCTATTTTTCAGCAGTTCATGTCACCATGGGAACTGCGGTATCATGCCTACTTCATGGAA 300
Query 355 GATCTCAAGTCATGGATGGTCATTTCAGCTGAGTGGATCGCTATCATGGCTTGCTCCCTC 414
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 301 GATCTCAAGTCATGGATGGTCATTTCAGCTGAGTGGATCGCTATCATGACTTGCTGCCTC 360
Query 415 TCCATTGTCGGGCTACGAGATAAGAAGAATGATCATAGACGATGGTTCTGGTACTCTTGT 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 TCCATTGTCGGGCTACGAGATAAGAAGAATGATCATAGACGATGGTTCTGGTACTCATGT 420
Query 475 GTTGTTGGATCTGCATTGACCATCTTTTGGCTTTATTACTTGCTGAGGCTTCCGAAATTC 534
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GTTGTTGGATCTGCATTGACCATCTTTTGGCTTTATTACTTACTGAGGCTTCCGAAATTC 480
Query 535 CGGTGGGATGCTATCTGGCTTCCGTTTGGGCCGCTTTGTGGAGCTGGAATTTGTCTATAC 594
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGATGGGATGCTATCTGGCTTCCGTTTGGGCCGCTTTGTGGAGCTGGAATTTGTCTATAC 540
Query 595 GTGGACCATCTTCTAGAGGAGTCATCTGAGGAAGTGAAAAAACTGAGGAACTATATGTAT 654
||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 541 GTGGACCATCTACTAGAGGAATCATCTGAGGAAGTGAAAAAATTAAGGAACTATATGTAT 600
Query 655 GCATATAAAGCACGGTAGAGAGATAATAGCTACTTT 690
|||||||||||| |||||||| | || ||||||||
Sbjct 601 GCATATAAAGCAAGGTAGAGA--TGATCGCTACTTT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5