BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26250.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492188 jgi|Araly1|492188|fgenesh2_kg.7__1621__AT4G26250.1 1387 0.0
Ahg894259 jgi|Araly1|894259|Al_scaffold_0006_2255 1266 0.0
> Ahg492188 jgi|Araly1|492188|fgenesh2_kg.7__1621__AT4G26250.1
Length=1019
Score = 1387 bits (751), Expect = 0.0
Identities = 925/1010 (92%), Gaps = 8/1010 (1%)
Strand=Plus/Plus
Query 23 TCGAGAAG-AGTATCAAAGCTGACGTGACGGTGAGCCATGACCGTG-TGAAAAGGGCTTA 80
|||||||| || ||| ||| |||||||| | |||||| ||| ||| | ||||| |||||
Sbjct 14 TCGAGAAGAAG-ATCGAAGATGACGTGATGATGAGCCCTGATGGTGAT-AAAAGAGCTTA 71
Query 81 CGTCACTTTCCTTGCTGGAAACAAAGACTACTGGATGGGTGTAGTTGGTCTAGCCAAGGG 140
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 72 TGTCACTTTCCTTGCCGGGAACAAAGACTACTGGATGGGTGTGGTTGGTCTAGCCAAAGG 131
Query 141 ACTTCGTAAGGTGAAATCTGCTTATCCTCTTGTGGTTGCGATTCTCCCGGACGTGCCTGA 200
||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 132 ACTCCGTAAAGTGAAATCTGCTTATCCTCTTGTGGTGGCTATTCTCCCGGACGTGCCTGA 191
Query 201 GGAACACCGTCAAATCCTGTTGGCTCAGGGATGCATCATCCGTGAGATTGAACCGGTTTA 260
||||||||||||||| || | |||||||||||||||||||||||||| ||||| || ||
Sbjct 192 AGAACACCGTCAAATCTTGGTCGCTCAGGGATGCATCATCCGTGAGATCGAACCAGTCTA 251
Query 261 TCCACCGGAAAACAAAACCGGTTATTCAATGGCCTATTACGTTATCAACTACTCCAAGCT 320
||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 252 TCCCCCAGAAAACAAAACCGGTTATTCTATGGCTTATTATGTTATCAACTACTCCAAGCT 311
Query 321 TCGTATTTGGGAGTTTGTGGAGTATGAAAAGATGATTTATCTAGATGGAGACATTCAAGT 380
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 312 TCGTATTTGGGAGTTTGTGGAATATGAGAAGATGATCTATCTAGATGGAGACATTCAAGT 371
Query 381 ATTTAGTAACATCGATCATCTTTTCGATACTCCTCGTGGCTACTTGTACGCTGTCAAAGA 440
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 372 ATTTAGTAATATCGATCATCTTTTTGATACTCCTCGTGGCTATTTGTACGCTGTCAAAGA 431
Query 441 TTGCTTTTGCGAGATTTCTTGGTCCAAAACTCCTCAATTTAAGATAGGTTACTGCCAACA 500
||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 432 TTGTTTTTGCGAGGTTTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTACTGCCAACA 491
Query 501 ATGTCCTGAAAAGGTGACATGGCCTGTTGAAAGTCTTGGTTCTCCACCGCCGGTATATTT 560
||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 492 GTGTCCTGAAAAGGTGACTTGGCCTGTCGAAAGCCTTGGTTCTCCACCGCCGGTTTATTT 551
Query 561 CAACGCCGGTATGTTGGTTTTTGAACCTA-ATCTCCTCACTTACGAGGATCTCCTTCGTG 619
||||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||
Sbjct 552 CAACGCCGGTATGTTGGTTTTTGAACC-ACATCTTGACACTTACGAGGATCTTCTTCGTG 610
Query 620 TTGTTCAAATCACCACTCCGACATATTTTGCCGAACAGGATTTTCTGAATGAATACTTTA 679
||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||
Sbjct 611 TTGTTCAAATCACCACTCCAACTTACTTTGCCGAACAGGATTTTCTGAATGATTACTTTA 670
Query 680 CAGACATTTACAAGCCCATCCCTTCGACCTACAACCTTGTAATGGCTATGCTTTGGCGTC 739
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 671 GAGACATTTACAAGCCAATCCCTTCGACCTATAACCTCGTAATGGCTATGCTTTGGCGTC 730
Query 740 ATCCTGAACACATTGACCTTGACCAAATCAGTGTTATTCATTATTGTGCAAATGGTTCGA 799
||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct 731 ATCCTGAACACGTTGACCTTGACCAAATCAGTGTTGTTCATTACTGTGCTAATGGTTCGA 790
Query 800 AGCCTTGGAGATTCGATGAAACTGAAGAGCATATGGATCGTGAGGACATAAAAATGTTGG 859
||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 791 AGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGTGAAGACATAAAAATGTTGG 850
Query 860 TGAAGAAATGGTGGGATATTTATGAAGATTCGAGTTTAGATTACAAGAACTTTGTCGAGA 919
|||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||
Sbjct 851 TGAAGAAATGGTGGGACATTTACGAAGATGCGAGTTTAGACTACAAGAACTTTGTCGAGA 910
Query 920 CTGAGTCCAAACTGAGTCCGATCA-ATGCAACCTTGGCTTCCAAGGAATCTGTTGGCGAT 978
||||| |||| || |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 911 CTGAGCCCAAGCTAAGTCCGATCACA-GCAACCTTGGCTTCCAAGGAATCTGTTGGCGAT 969
Query 979 GTCCTTATTAGTCTTGCCCCTTCCGCTGCATAACCAATTCTTTATGTGGA 1028
||||||| || ||||||||||| || ||||||||||| |||||||||||
Sbjct 970 GTCCTTACGAGCCTTGCCCCTTCTGCCGCATAACCAATCCTTTATGTGGA 1019
> Ahg894259 jgi|Araly1|894259|Al_scaffold_0006_2255
Length=1008
Score = 1266 bits (685), Expect = 0.0
Identities = 910/1018 (89%), Gaps = 17/1018 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCAAATGTCGATGACCGTCGAGAAGAGTATC-AAAGCTGACGTGACGGTGAGCCA 59
||||| |||||| ||||||||||||||||||| ||| ||| ||||||| ||||||||
Sbjct 1 ATGGCCCAAATGACGATGACCGTCGAGAAGAGGATCGAAA-CTGACGT---GGTGAGCC- 55
Query 60 T-GACCGTGTGAAAAGGGCTTACGTCACTTTCCTTGCTGGAAACAAAGACTACTGGATGG 118
| | | |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 56 TCGGCGGTGTGAAAAGGGCTTACGTCACTTTCCTCGCCGGAAACAAAGACTACTGGATGG 115
Query 119 GTGTAGTTGGTCTAGCCAAGGGACTTCGTAAGGTGAAATCTGCTTATCCTCTTGTGGTTG 178
|||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 116 GTGTGGTTGGTCTAGCCAAAGGACTTCGTAAGGTAAAATCAGCTTATCCTCTCGTGGTGG 175
Query 179 CGATTCTCCCGGACGTGCCTGAGGAACACCGTCAAATCCTGTTGGCTCAGGGATGCATCA 238
||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 176 CGACTCTCCCTGACGTGCCTGAGGAACACCGTCAAATCCTGGTGGCTCAAGGATGCATCA 235
Query 239 TCCGTGAGATTGAACCGGTTTATCCACCGGAAAACAAAACCGGTTATTCAATGGCCTATT 298
||||||| || |||| |||||||| ||||||||| ||||||||||||| ||||| ||||
Sbjct 236 TCCGTGACATCAAACCCGTTTATCCTCCGGAAAACGAAACCGGTTATTCCATGGCTTATT 295
Query 299 ACGTTATCAACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGA-AAAGATGATT 357
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 296 ACGTTATCAACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGAGAAA-ATGATA 354
Query 358 TATCTAGATGGAGACATTCAAGTATTTAGTAACATCGATCATCTTTTCGATACTCCTCGT 417
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 355 TATCTAGATGGAGACATACAAGTGTTTAGTAACATTGATCATCTTTTCGATACTCCTCGT 414
Query 418 GGCTACTTGTACGCTGTCAAAGATTGCTTTTGCGAGATTTCTTGGTCCAAAACTCCTCAA 477
|||||||||||||| || |||||||||||||||||| | |||||||| ||||||||||||
Sbjct 415 GGCTACTTGTACGCCGTGAAAGATTGCTTTTGCGAGGTATCTTGGTCTAAAACTCCTCAA 474
Query 478 TTTAAGATAGGTTACTGCCAACAAT-GTCCTGAAAAGGTGACATGGCCTGTTGAAAGTCT 536
| ||||| |||||||||||||| | | ||| |||| ||||| |||||||||||||| ||
Sbjct 475 TACAAGATCGGTTACTGCCAACAGTCG-CCTAAAAAAGTGACTTGGCCTGTTGAAAGCCT 533
Query 537 TGGTTCTCCACCGCCGGTATATTTCAACGCCGGTATGTTGGTTTTTGAACCTAATCTCCT 596
|| | |||||||||||||||||||| || |||||||||||||||||||| ||||| |
Sbjct 534 CCGTGCGCCACCGCCGGTATATTTCAATGCTGGTATGTTGGTTTTTGAACCAAATCTTAT 593
Query 597 CACTTACGAGGATCTCCTTCGTGTTGTTCAAATCACCACTCCGACATATTTTGCCGAACA 656
|||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 594 CACTTATGAGGATCTCCTTCGTGTTGTTCAAATCACTACTCCAACTTATTTTGCCGAACA 653
Query 657 GGA-TTTTCTGAATGAATACTTTACAGACATTTACAAGCCCATCCCTTCGACCTACAACC 715
||| |||| |||||| ||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 654 GGACTTTT-TGAATGTGTACTTCAGAGACATTTACAAGCCAATCCCTTCGACCTACAACC 712
Query 716 TTGTAATGGC--TATGCTTTGGCGTCATCCTGAACACATTGACCTTGACCAAATCAGTGT 773
| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 713 TCCCA--GGCCCTATGCTTTGGCGTCACCCTGAACACATTGACCTTGACCAAATCAGTGT 770
Query 774 TATTCATTATTGTGCAAATGGTTCGAAGCCTTGGAGATTCGATGAAACTGAAGAGCATAT 833
| |||| |||||||| ||||||||||||| |||||||||||||| | |||||||||| ||
Sbjct 771 TGTTCACTATTGTGCTAATGGTTCGAAGCTTTGGAGATTCGATGGAGCTGAAGAGCACAT 830
Query 834 GGATCGTGAGGACATAAAAATGTTGGTGAAGAAATGGTGGGATATTTATGAAGATTCGAG 893
|||||| || ||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 831 GGATCGAGAAGACATAAAAATGTTGGTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAG 890
Query 894 TTTAGATTACAAGAACTTTGTCGAGACTGAGTCCAAACTGAGTCCGATCAATGCAACCTT 953
|||||| |||||||| |||||||||||||||||||| |||| |||| ||| |||||||||
Sbjct 891 TTTAGACTACAAGAATTTTGTCGAGACTGAGTCCAAGCTGAATCCGGTCACTGCAACCTT 950
Query 954 GGCTTCCAAGGAATCTGTTGGCGATGTCCTTATTAGTCTTGCCCCTTCCGCTGCATAA 1011
||||||||||||||||||||| |||| ||| | || |||||||| || || ||||||
Sbjct 951 GGCTTCCAAGGAATCTGTTGGTGATGCCCTAACGAGCCTTGCCCCCTCTGCCGCATAA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5