BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26260.2
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945448 jgi|Araly1|945448|scaffold_701677.1 1576 0.0
Ahg495755 jgi|Araly1|495755|fgenesh2_kg.8__1571__AT5G56640.1 797 0.0
Ahg945449 jgi|Araly1|945449|scaffold_701678.1 379 2e-104
> Ahg945448 jgi|Araly1|945448|scaffold_701677.1
Length=995
Score = 1576 bits (853), Expect = 0.0
Identities = 949/995 (95%), Gaps = 7/995 (1%)
Strand=Plus/Plus
Query 117 AAAAACCTTTCTTCGAAAAGATGACGATCTCTGTTGAGAAGCCGATTTTTGAAGAAGAGG 176
||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2 AAAAACCGTTCTTCGAAAAGATGACGATCTCTGTTGAGAAGCCGATTTTTG-AG--GAGG 58
Query 177 TTTCTGCATTCGAGAAGAGTGGGGACAATATCGGAGAGTTGAAATTGGACGGAGGATTTT 236
|||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 59 GTTCTGCATTCAAGAAGAGTGGGGACAAGATCGGAGAGTTCAAATTGGACGGAGGATTTT 118
Query 237 CGATGCCGAAAATGGACACC-AATGACGACGAAGCTTTTTTGGCTCCTGAGATGAATGCA 295
|||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||
Sbjct 119 CGATGCCGAAAATGGACACCGAA-GACGATGAAGCTTTTTTGGCCCCTGAGATGAATGCA 177
Query 296 TTTGGCCGCCAATTCAGGGACTACGATGTTGAGAGTGAGAGGCAAAAGGGCGTCGAAGAG 355
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTTGGACGTCAATTCAGGGACTACGATGTTGAGAGTGAGAGGCAAAAGGGCGTCGAAGAG 237
Query 356 TTTTACAGATTACAACACATCAACCAAACTGTCGACTTTGTGAAAAAGATGAGGGCTGAA 415
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 238 TTTTACAGATTACAACACATTAACCAAACTGTCGACTTTGTGACAAAGATGAGGGCTGAA 297
Query 416 TATGGAAAATTAGATAAAATGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTCAATGAG 475
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 TATGGAAAATTAGATAAAAAGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTTAATGAG 357
Query 476 GTTGTGGATGAGAGTGATCCAGATCTTGACGAGCCCCAGATTCAGCATTTGCTTCAATCT 535
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 358 GTTGTGGATGAGAGTGATCCAGATCTCGACGAGCCTCAGATTCAGCATTTGCTTCAATCC 417
Query 536 GCCGAAGCCATCCGCAAAGATTACCCTAATGAAGATTGGCTTCATCTGACCGCTCTTATC 595
|| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 418 GCGGAAGCAATCCGCAAAGATTACCCTAATGAGGATTGGCTTCATCTAACCGCTCTTATT 477
Query 596 CATGATCTTGGGAAAGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTT 655
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 CATGATCTTGGGAAGGTTATTACTCTTCCACAATTCGGAGGACTTCCACAATGGGCTGTT 537
Query 656 GTTGGTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACAAGTAC 715
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 538 GTTGGTGACACATTCCCTGTTGGCTGTGCCTTTGATGAATCTAACGTACATCACAAGTAC 597
Query 716 TTTGTGGAAAACCCAGATTTTCACAACGAAA-CCTACAACACTAAAAATGGGATTTACTC 774
||| | || |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 598 TTTATAGATAACCCAGATTTTCACAAC-AAAGCCTACAACACTAAAAATGGGATTTACTC 656
Query 775 TGAAGGGTGTGGATTAAACAATGTCATGATGTCTTGGGGCCATGACGACTACATGTACCT 834
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGAAGGATGTGGATTAAACAATGTCATGATGTCTTGGGGCCATGACGACTACATGTACCT 716
Query 835 GGTGGCTAAAGAAAACGGAAGTACCTTGCCGTCGGCTGGACAGTTTATCATAAGATACCA 894
||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 717 GGTTGCTAAAGAAAACGGAAGTACCTTGCCGTCTCCTGGACAGTTTATCATACGATACCA 776
Query 895 TTCCTTTTACCCTTTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAA 954
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTCCTTTTACCCATTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAA 836
Query 955 GGAGAATCTGAAGTGGCTACACGTTTTCAACAAGTACGACTTGTACAGTAAGAGCAAAGT 1014
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGAGAACCTGAAGTGGCTACACGTTTTCAACAAGTACGACTTGTACAGTAAGAGCAAAGT 896
Query 1015 TCACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAATATTTCCC 1074
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 897 TCATGTTGATGTGGAGAAGGTCAAGCCCTACTACATGTCTCTTATCAAGAAATATTTCCC 956
Query 1075 GGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAA 1109
|||||||||||||||||||||||||||||| ||||
Sbjct 957 GGAAAACTTGAGGTGGTGAATTCGGTGGAGGAAAA 991
> Ahg495755 jgi|Araly1|495755|fgenesh2_kg.8__1571__AT5G56640.1
Length=1150
Score = 797 bits (431), Expect = 0.0
Identities = 703/834 (84%), Gaps = 19/834 (2%)
Strand=Plus/Plus
Query 272 TTTTTGGCTCCTGAGATGAATGCATTTGGCCGCCAATTCAGGGACT--AC-GATGTTGAG 328
|||||||||||||||||||| |||||||| || |||||||| |||| || ||| |
Sbjct 128 TTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACACGGATACAAAT 187
Query 329 AGTGAGAGGCAAAAGGGCGTCGAAGAGTTT-TACAGATTACAACACATCAACCAAACTGT 387
|| |||||||||||| |||||||| | ||| || | | ||||||||| ||||||| | |
Sbjct 188 AGCGAGAGGCAAAAGAGCGTCGAACA-TTTCTATAAAACACAACACATTAACCAAAGTTT 246
Query 388 CGACTTTGTGAAA-AAGATGAG-GGCTGAATATGGAAAATTAGATAAAATGGTGATGAGC 445
|||||||| ||| || ||||| | ||| ||||||||||| || || |||||||||| |
Sbjct 247 GGACTTTGT-AAAGAAAATGAGAAG-TGAGTATGGAAAATTGGACAAGATGGTGATGAAC 304
Query 446 ATTTGGGAATGTTGTGAGCTTCTCAATGAGGTTGTGGATGAGAGTGATCCAGATCTTGAC 505
||||||||||||||||| ||| | || || || ||||| ||||||||||| || || |||
Sbjct 305 ATTTGGGAATGTTGTGAACTTTTAAACGAAGTGGTGGACGAGAGTGATCCCGACCTCGAC 364
Query 506 GAGCCCCAGATTCAGCATTTGCTTCAATCTGCCGAAGCCATCCGCAAAGATTACCCTAAT 565
|| || || ||||| ||||||||||||||||| ||||| ||||| |||||||| || ||
Sbjct 365 GAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAAGATTATCCAAAC 424
Query 566 GAAGATTGGCTTCATCTGACCGCTCTTATCCATGATCTTGGGAAAGTTATTACTCTTCCA 625
|||||||||||||| || || ||||||||||||||||||||||| ||| ||||||| |||
Sbjct 425 GAAGATTGGCTTCACCTCACTGCTCTTATCCATGATCTTGGGAAGGTTCTTACTCTACCA 484
Query 626 CAATTCGGAGGACTTCCTCAATGGGCTGTTGTTGGTGACACATTCCCTGTTGGATGTGCA 685
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 485 CAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTCCCTGTTGGGTGTGCA 544
Query 686 TTTGATGAATCTAACGTACATCACAAGTACTTTGTGGAAAACCCAGATTTTCACAA-CGA 744
|||||||||||||||||||| |||||||| ||| |||||||| | |||||| |||| | |
Sbjct 545 TTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACGCTGATTTTAACAATCCA 604
Query 745 AACCTACAACACTAAAAATGGGATTTACTCTGAAGGGTGTGGA-TTAAACAATGT-CATG 802
|| || || || |||| ||| ||||| |||||||| |||||| || | ||||| | |
Sbjct 605 AAG-TATAATACCAAAACTGGAATTTATTCTGAAGGATGTGGACTTGAG-AATGTTCTT- 661
Query 803 ATGTCTTGGGGCCATGACGACTACATGTACCTGGTGGCTAAAGAAAACGGAAGTACCTTG 862
||||| ||||| ||||| ||||||||||| ||||||||||| || || ||||| ||| |
Sbjct 662 ATGTCATGGGGACATGATGACTACATGTATCTGGTGGCTAAGGAGAATGGAAGCACCCTA 721
Query 863 CCGTCGGCTGGAC-AGTTTATCATAAGATACCATTCCTTTTACCCTTTGCACACGGCTGG 921
|| || | |||| | || ||||| |||||||||||||||| || ||||||| ||||||
Sbjct 722 CCATCCTCGGGACTA-TTCATCATCCGATACCATTCCTTTTATCCATTGCACAAGGCTGG 780
Query 922 AGAATACACCCATCTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTT 981
|| ||||| || ||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct 781 AGCTTACACTCACCTTATGAACGAAGAAGACAAGGAAAATCTCAAATGGCTCCATGTTTT 840
Query 982 CAACAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTCAAGCC 1041
||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct 841 CAACAAGTACGACTTATACAGCAAGAGCAAAGTACACGTGGATGTCGAGAAGGTTAAGCC 900
Query 1042 TTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAA-CTTGAGGTGGTGAA 1094
|||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 901 GTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCT-GAGGTGGTGAA 953
> Ahg945449 jgi|Araly1|945449|scaffold_701678.1
Length=667
Score = 379 bits (205), Expect = 2e-104
Identities = 302/349 (87%), Gaps = 6/349 (2%)
Strand=Plus/Plus
Query 254 ACCAATGACGACGAAGCTTTTTTGGCTCCTGAGATGAATGCATTTGGCCGCCAATTCAGG 313
||||| ||||||||||| || ||||| || || ||||||||||| |||| |||||||||
Sbjct 213 ACCAAAGACGACGAAGCGTTCTTGGCACCAGAAATGAATGCATTCAGCCGTCAATTCAGG 272
Query 314 GACTACGATGTTGAGAGTGAGAGGCA-AAAGGGCGTCGAAGAGTTTTACAGA-TTACAAC 371
||||| |||| |||| ||| ||||| ||| |||| |||| ||||||| | | || |
Sbjct 273 GACTATGATGCTGAGTCTGAAAGGCAGAAA-AGCGTGGAAGCTTTTTACAAAGCT-CAGC 330
Query 372 ACATCAACCAAACTGTCGAC-TTTGTGAAAAAGATGAGGGCTGAATATGGAAAATTAGAT 430
| |||||||||||||||| | ||||||| ||||||||||||||| | ||||||||| ||
Sbjct 331 ATATCAACCAAACTGTCG-CTTTTGTGACAAAGATGAGGGCTGATTTTGGAAAATTGGAC 389
Query 431 AAAATGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTCAATGAGGTTGTGGATGAGAGT 490
|||| ||||||||||||||||||||| |||||||| || || ||||| || |||||||||
Sbjct 390 AAAAAGGTGATGAGCATTTGGGAATGCTGTGAGCTCCTTAACGAGGTCGTAGATGAGAGT 449
Query 491 GATCCAGATCTTGACGAGCCCCAGATTCAGCATTTGCTTCAATCTGCCGAAGCCATCCGC 550
|||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||
Sbjct 450 GATCCAGATCTTGATGAGCCTCAGATTCAACATTTGCTTCAATCCGCGGAAGCCATCCGC 509
Query 551 AAAGATTACCCTAATGAAGATTGGCTTCATCTGACCGCTCTTATCCATG 599
|||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 510 AAAGATTACCCTAATGAAGATTGGCTTCATCTAACCGCTCTTATTCATG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5