BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26260.2 Length=1266 Score E Sequences producing significant alignments: (Bits) Value Ahg945448 jgi|Araly1|945448|scaffold_701677.1 1576 0.0 Ahg495755 jgi|Araly1|495755|fgenesh2_kg.8__1571__AT5G56640.1 797 0.0 Ahg945449 jgi|Araly1|945449|scaffold_701678.1 379 2e-104 > Ahg945448 jgi|Araly1|945448|scaffold_701677.1 Length=995 Score = 1576 bits (853), Expect = 0.0 Identities = 949/995 (95%), Gaps = 7/995 (1%) Strand=Plus/Plus Query 117 AAAAACCTTTCTTCGAAAAGATGACGATCTCTGTTGAGAAGCCGATTTTTGAAGAAGAGG 176 ||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 2 AAAAACCGTTCTTCGAAAAGATGACGATCTCTGTTGAGAAGCCGATTTTTG-AG--GAGG 58 Query 177 TTTCTGCATTCGAGAAGAGTGGGGACAATATCGGAGAGTTGAAATTGGACGGAGGATTTT 236 |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 59 GTTCTGCATTCAAGAAGAGTGGGGACAAGATCGGAGAGTTCAAATTGGACGGAGGATTTT 118 Query 237 CGATGCCGAAAATGGACACC-AATGACGACGAAGCTTTTTTGGCTCCTGAGATGAATGCA 295 |||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||| Sbjct 119 CGATGCCGAAAATGGACACCGAA-GACGATGAAGCTTTTTTGGCCCCTGAGATGAATGCA 177 Query 296 TTTGGCCGCCAATTCAGGGACTACGATGTTGAGAGTGAGAGGCAAAAGGGCGTCGAAGAG 355 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 TTTGGACGTCAATTCAGGGACTACGATGTTGAGAGTGAGAGGCAAAAGGGCGTCGAAGAG 237 Query 356 TTTTACAGATTACAACACATCAACCAAACTGTCGACTTTGTGAAAAAGATGAGGGCTGAA 415 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 238 TTTTACAGATTACAACACATTAACCAAACTGTCGACTTTGTGACAAAGATGAGGGCTGAA 297 Query 416 TATGGAAAATTAGATAAAATGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTCAATGAG 475 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 298 TATGGAAAATTAGATAAAAAGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTTAATGAG 357 Query 476 GTTGTGGATGAGAGTGATCCAGATCTTGACGAGCCCCAGATTCAGCATTTGCTTCAATCT 535 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 358 GTTGTGGATGAGAGTGATCCAGATCTCGACGAGCCTCAGATTCAGCATTTGCTTCAATCC 417 Query 536 GCCGAAGCCATCCGCAAAGATTACCCTAATGAAGATTGGCTTCATCTGACCGCTCTTATC 595 || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 418 GCGGAAGCAATCCGCAAAGATTACCCTAATGAGGATTGGCTTCATCTAACCGCTCTTATT 477 Query 596 CATGATCTTGGGAAAGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTT 655 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 478 CATGATCTTGGGAAGGTTATTACTCTTCCACAATTCGGAGGACTTCCACAATGGGCTGTT 537 Query 656 GTTGGTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACAAGTAC 715 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 538 GTTGGTGACACATTCCCTGTTGGCTGTGCCTTTGATGAATCTAACGTACATCACAAGTAC 597 Query 716 TTTGTGGAAAACCCAGATTTTCACAACGAAA-CCTACAACACTAAAAATGGGATTTACTC 774 ||| | || |||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 598 TTTATAGATAACCCAGATTTTCACAAC-AAAGCCTACAACACTAAAAATGGGATTTACTC 656 Query 775 TGAAGGGTGTGGATTAAACAATGTCATGATGTCTTGGGGCCATGACGACTACATGTACCT 834 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 CGAAGGATGTGGATTAAACAATGTCATGATGTCTTGGGGCCATGACGACTACATGTACCT 716 Query 835 GGTGGCTAAAGAAAACGGAAGTACCTTGCCGTCGGCTGGACAGTTTATCATAAGATACCA 894 ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 717 GGTTGCTAAAGAAAACGGAAGTACCTTGCCGTCTCCTGGACAGTTTATCATACGATACCA 776 Query 895 TTCCTTTTACCCTTTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAA 954 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TTCCTTTTACCCATTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAA 836 Query 955 GGAGAATCTGAAGTGGCTACACGTTTTCAACAAGTACGACTTGTACAGTAAGAGCAAAGT 1014 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GGAGAACCTGAAGTGGCTACACGTTTTCAACAAGTACGACTTGTACAGTAAGAGCAAAGT 896 Query 1015 TCACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAATATTTCCC 1074 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 897 TCATGTTGATGTGGAGAAGGTCAAGCCCTACTACATGTCTCTTATCAAGAAATATTTCCC 956 Query 1075 GGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAA 1109 |||||||||||||||||||||||||||||| |||| Sbjct 957 GGAAAACTTGAGGTGGTGAATTCGGTGGAGGAAAA 991 > Ahg495755 jgi|Araly1|495755|fgenesh2_kg.8__1571__AT5G56640.1 Length=1150 Score = 797 bits (431), Expect = 0.0 Identities = 703/834 (84%), Gaps = 19/834 (2%) Strand=Plus/Plus Query 272 TTTTTGGCTCCTGAGATGAATGCATTTGGCCGCCAATTCAGGGACT--AC-GATGTTGAG 328 |||||||||||||||||||| |||||||| || |||||||| |||| || ||| | Sbjct 128 TTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACACGGATACAAAT 187 Query 329 AGTGAGAGGCAAAAGGGCGTCGAAGAGTTT-TACAGATTACAACACATCAACCAAACTGT 387 || |||||||||||| |||||||| | ||| || | | ||||||||| ||||||| | | Sbjct 188 AGCGAGAGGCAAAAGAGCGTCGAACA-TTTCTATAAAACACAACACATTAACCAAAGTTT 246 Query 388 CGACTTTGTGAAA-AAGATGAG-GGCTGAATATGGAAAATTAGATAAAATGGTGATGAGC 445 |||||||| ||| || ||||| | ||| ||||||||||| || || |||||||||| | Sbjct 247 GGACTTTGT-AAAGAAAATGAGAAG-TGAGTATGGAAAATTGGACAAGATGGTGATGAAC 304 Query 446 ATTTGGGAATGTTGTGAGCTTCTCAATGAGGTTGTGGATGAGAGTGATCCAGATCTTGAC 505 ||||||||||||||||| ||| | || || || ||||| ||||||||||| || || ||| Sbjct 305 ATTTGGGAATGTTGTGAACTTTTAAACGAAGTGGTGGACGAGAGTGATCCCGACCTCGAC 364 Query 506 GAGCCCCAGATTCAGCATTTGCTTCAATCTGCCGAAGCCATCCGCAAAGATTACCCTAAT 565 || || || ||||| ||||||||||||||||| ||||| ||||| |||||||| || || Sbjct 365 GAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAAGATTATCCAAAC 424 Query 566 GAAGATTGGCTTCATCTGACCGCTCTTATCCATGATCTTGGGAAAGTTATTACTCTTCCA 625 |||||||||||||| || || ||||||||||||||||||||||| ||| ||||||| ||| Sbjct 425 GAAGATTGGCTTCACCTCACTGCTCTTATCCATGATCTTGGGAAGGTTCTTACTCTACCA 484 Query 626 CAATTCGGAGGACTTCCTCAATGGGCTGTTGTTGGTGACACATTCCCTGTTGGATGTGCA 685 || || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 485 CAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTCCCTGTTGGGTGTGCA 544 Query 686 TTTGATGAATCTAACGTACATCACAAGTACTTTGTGGAAAACCCAGATTTTCACAA-CGA 744 |||||||||||||||||||| |||||||| ||| |||||||| | |||||| |||| | | Sbjct 545 TTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACGCTGATTTTAACAATCCA 604 Query 745 AACCTACAACACTAAAAATGGGATTTACTCTGAAGGGTGTGGA-TTAAACAATGT-CATG 802 || || || || |||| ||| ||||| |||||||| |||||| || | ||||| | | Sbjct 605 AAG-TATAATACCAAAACTGGAATTTATTCTGAAGGATGTGGACTTGAG-AATGTTCTT- 661 Query 803 ATGTCTTGGGGCCATGACGACTACATGTACCTGGTGGCTAAAGAAAACGGAAGTACCTTG 862 ||||| ||||| ||||| ||||||||||| ||||||||||| || || ||||| ||| | Sbjct 662 ATGTCATGGGGACATGATGACTACATGTATCTGGTGGCTAAGGAGAATGGAAGCACCCTA 721 Query 863 CCGTCGGCTGGAC-AGTTTATCATAAGATACCATTCCTTTTACCCTTTGCACACGGCTGG 921 || || | |||| | || ||||| |||||||||||||||| || ||||||| |||||| Sbjct 722 CCATCCTCGGGACTA-TTCATCATCCGATACCATTCCTTTTATCCATTGCACAAGGCTGG 780 Query 922 AGAATACACCCATCTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTT 981 || ||||| || ||||||||||| ||||||||||| ||||| || ||||| || ||||| Sbjct 781 AGCTTACACTCACCTTATGAACGAAGAAGACAAGGAAAATCTCAAATGGCTCCATGTTTT 840 Query 982 CAACAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTCAAGCC 1041 ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct 841 CAACAAGTACGACTTATACAGCAAGAGCAAAGTACACGTGGATGTCGAGAAGGTTAAGCC 900 Query 1042 TTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAA-CTTGAGGTGGTGAA 1094 |||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 901 GTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCT-GAGGTGGTGAA 953 > Ahg945449 jgi|Araly1|945449|scaffold_701678.1 Length=667 Score = 379 bits (205), Expect = 2e-104 Identities = 302/349 (87%), Gaps = 6/349 (2%) Strand=Plus/Plus Query 254 ACCAATGACGACGAAGCTTTTTTGGCTCCTGAGATGAATGCATTTGGCCGCCAATTCAGG 313 ||||| ||||||||||| || ||||| || || ||||||||||| |||| ||||||||| Sbjct 213 ACCAAAGACGACGAAGCGTTCTTGGCACCAGAAATGAATGCATTCAGCCGTCAATTCAGG 272 Query 314 GACTACGATGTTGAGAGTGAGAGGCA-AAAGGGCGTCGAAGAGTTTTACAGA-TTACAAC 371 ||||| |||| |||| ||| ||||| ||| |||| |||| ||||||| | | || | Sbjct 273 GACTATGATGCTGAGTCTGAAAGGCAGAAA-AGCGTGGAAGCTTTTTACAAAGCT-CAGC 330 Query 372 ACATCAACCAAACTGTCGAC-TTTGTGAAAAAGATGAGGGCTGAATATGGAAAATTAGAT 430 | |||||||||||||||| | ||||||| ||||||||||||||| | ||||||||| || Sbjct 331 ATATCAACCAAACTGTCG-CTTTTGTGACAAAGATGAGGGCTGATTTTGGAAAATTGGAC 389 Query 431 AAAATGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTCAATGAGGTTGTGGATGAGAGT 490 |||| ||||||||||||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 390 AAAAAGGTGATGAGCATTTGGGAATGCTGTGAGCTCCTTAACGAGGTCGTAGATGAGAGT 449 Query 491 GATCCAGATCTTGACGAGCCCCAGATTCAGCATTTGCTTCAATCTGCCGAAGCCATCCGC 550 |||||||||||||| ||||| |||||||| |||||||||||||| || |||||||||||| Sbjct 450 GATCCAGATCTTGATGAGCCTCAGATTCAACATTTGCTTCAATCCGCGGAAGCCATCCGC 509 Query 551 AAAGATTACCCTAATGAAGATTGGCTTCATCTGACCGCTCTTATCCATG 599 |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 510 AAAGATTACCCTAATGAAGATTGGCTTCATCTAACCGCTCTTATTCATG 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47310539997 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5