BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26270.1
Length=2086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1 1642 0.0
Ahg495754 jgi|Araly1|495754|fgenesh2_kg.8__1570__AT5G56630.1 1423 0.0
> Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1
Length=1799
Score = 1642 bits (889), Expect = 0.0
Identities = 1021/1082 (94%), Gaps = 19/1082 (2%)
Strand=Plus/Plus
Query 92 TTTACCGACTACAATGGTCAAAATTTCTCTACTCCTATAAAAATGGGTCGCCTTGTTTTT 151
|||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 1 TTTACCGACTCCAATGGTCAAAA-TTCTCTAATCCTATAAAAAAGGGTCGCCTTGTTTTT 59
Query 152 GATCAACGGATTTGATTCATCTTTCTTTTTACCTTTCTTCCTGCTTTCGTATTCAATTTG 211
|||| |||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 60 GATCTACGGATTTGATTCA----------T--CTTTCTTCCTGATTTCGTATTCAATTTG 107
Query 212 TAGTTGACCAGTTCAAAAGTCTCTATACCAG-aaaaaaaaa-TCG-TTTTTTATTATATT 268
| |||||| ||||| ||||||||||||| || ||||||||| ||| ||||| |||| |||
Sbjct 108 TCGTTGACGAGTTC-AAAGTCTCTATACGAGAAAAAAAAAATTCGATTTTTAATTAAATT 166
Query 269 ATAAGACTTTTCCCCTGAA-ATTGTTGTTCCTCTGTTTCGAGCGTTCGTTATGAGTACTG 327
|||||| |||||||||||| ||||||||||||||||||| | | |||||||||||||||
Sbjct 167 ATAAGAGTTTTCCCCTGAAGTTTGTTGTTCCTCTGTTTCGTGAG-TCGTTATGAGTACTG 225
Query 328 TGGAGAGTAGCAAACCGAAGATCATCAATGGCTCTTGTGGTTATGTTCTAGAAGATGTAC 387
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 226 TGGAAAGTAGCAAACCGAAGATCATCAATGGTTCTTGTGGTTATGTTCTAGAAGACGTTC 285
Query 388 CGCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAATC 447
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CTCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAATC 345
Query 448 CAGCTTACTCAGTGGTTAAGCAATACTTTGTTGATGCTGATGACAGTGTTCCTCAAAAGA 507
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 346 CAGCATACTCAGTGGTGAAGCAATACTTTGTTGATGCTGATGATAGTGTTCCTCAAAAGA 405
Query 508 TCGTTGTTCACAAGGATGGTCCAAGGGGGATTCATTTTAGACGAGCCGGGCCACGTCAGA 567
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 406 TCGTTGTTCACAAGGATGGTCCAAGGGGGATTCATTTTAGACGAGCAGGGCCACGTCAAA 465
Query 568 AGGTATACTTCGAATCTGATGAAGTGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGTC 627
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 466 AGGTATACTTCGAATCTGATGAAGGGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGTC 525
Query 628 CTGGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTCTATCTTATATGTATGGAGTGA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 CTGGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTCTATCTTATATGTATGGAGTGA 585
Query 688 AGAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTCCT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AGAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTCCT 645
Query 748 TGGACTCTAAAGTTGTAAATGATATCCATAAGCGTGGAGGGACTATCCTTGGGACCTCAC 807
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 646 TGGACTCTAAAGTCGTAAATGATATCCATAAGCGTGGAGGGACTATCCTCGGGACCTCGC 705
Query 808 GAGGTGGTCACGATACCACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCAGG 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GAGGTGGTCACGATACCACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCAGG 765
Query 868 TTTACATTATAGGAGGAGATGGAACACAGCGAGGAGCATCTGTCATATTTGAGGAAATTA 927
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 766 TTTACATTATAGGAGGAGATGGAACTCAGCGAGGAGCATCTGTTATATTTGAGGAAATTA 825
Query 928 GAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACAATCGATAATGACATAC 987
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 826 GACGACGTGGCCTGAAAGTTGCAGTTGTTGGAATCCCGAAAACAATCGATAATGACATAC 885
Query 988 CTGTGATAGACAAATCTTTTGGGTTTGACACTGCTGTAGAAGAGGCTCAACGAGCTATTA 1047
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 886 CTGTGATAGACAAATCTTTTGGGTTTGACACAGCTGTAGAAGAGGCTCAACGAGCTATTA 945
Query 1048 ATGCAGCACATGTGGAAGCCGAGAGTATAGAGAATGGTATCGGAGTTGTCAAGCTTATGG 1107
| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||
Sbjct 946 ACGCAGCACATGTGGAAGCGGAGAGTATAGAGAACGGTATTGGCGTTGTCAAGCTTATGG 1005
Query 1108 GTCGCTACAGCGGGTTCATAGCGATGTATGCCACTCTAGCAAGCAGAGATGTGGACTGCT 1167
| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1006 GCCGCTACAGCGGTTTCATAGCGATGTACGCGACTCTAGCAAGCAGAGATGTGGACTGCT 1065
Query 1168 GT 1169
||
Sbjct 1066 GT 1067
Score = 1090 bits (590), Expect = 0.0
Identities = 699/749 (93%), Gaps = 18/749 (2%)
Strand=Plus/Plus
Query 1203 GAAGGCGGACTGTTTGAGTACATAGAGAAACGACTCAAGGAGAGCGGTCACATGGTTCTT 1262
||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 1068 GAAGGTGGACTGTTTGAGTACATAGAGAAACGGCTCAAGGAGAGTGGTCATATGGTGCTT 1127
Query 1263 GTGATTGCAGAAGGTGCAGGACAAGATCTAATGTCGAAGAGCATGGAATCTATGACACTC 1322
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1128 GTGATTGCAGAAGGTGCAGGACAAGATCTAATGTCAAAGAGCATGGAATCTATGACACTC 1187
Query 1323 AAAGATGCATCTGGTAACAAACTTCTTAAAGATGTTGGCCTTTGGCTGTCACAAAGCATC 1382
|| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 1188 AAGGATGCATCTGGTAACAAACTTCTCAAAGATGTTGGTCTTTGGTTGTCACAAAGCATC 1247
Query 1383 AAGGATCATTTTAATCAGAAGAAGATGGTGATGAACCTCAAGTACATAGATCCAACATAC 1442
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1248 AAGGATCATTTTAATCAGAAGAAGATGGTGATGAACCTCAAGTACATAGATCCAACGTAC 1307
Query 1443 ATGATTCGAGCTGTTCCTAGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAG 1502
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 ATGATTCGGGCTATTCCTAGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAG 1367
Query 1503 AGTGCAGTGCACGGTGCAATGGCTGGATACACTGGCTATATCAGTGGTCTAGTGAACGGA 1562
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1368 AGTGCAGTGCACGGTGCAATGGCTGGATACACTGGCTATATCAGTGGTTTAGTGAACGGA 1427
Query 1563 AGACAAACCTACATACCCTTTTACAGGATAACGGAGAAACAGAACCATGTGGTGATCACA 1622
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AGACAAACCTACATACCCTTCTACAGGATAACGGAGAAACAGAACCATGTGGTGATCACA 1487
Query 1623 GACAGGATGTGGGCAAGGCTACTCTCTTCGACAAACCAGCCGAGTTTCTTGGGCCCCAAA 1682
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1488 GACAGGATGTGGGCAAGGCTACTATCTTCGACAAACCAGCCGAGTTTCTTGGGCCCCAAA 1547
Query 1683 GATGTCTTTGATAATAAAGAGAAACCGATGTCGGCTCTCCTTGACGATGGTAACTGCAAT 1742
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1548 GATGTCTTTGATAATAAAGAGAAGCCGATGTCGGCTCTCCTGGACGATGGCAACTGCAAT 1607
Query 1743 GGCGTGGTGGATGTTCCTCCAGTCACCAAAGAGATCACCAAGTGACCTGAACATAAGAAC 1802
||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1608 GGCATGGTCGATGTTCCTCCAGTCACCAAAGAGATCAACAAGTGACCTGAACATAGGAAC 1667
Query 1803 AACGACAGAAAAGCTTTG-CGTTTTCAAAAGATGTTACATGTTTTAGGTAGTTGAGTAAA 1861
||||||| || |||||| |||||||||| | ||||||| ||||||||||| |||||||
Sbjct 1668 AACGACATAA--GCTTTGGCGTTTTCAAATGGTGTTACAAGTTTTAGGTAG--GAGTAAA 1723
Query 1862 ATAATAGGGTGTTGACGGTTTTACCCTTTTTGGCATAACAAAGCAATCTTTGTTAGATGC 1921
|||| ||||| ||||| |||||||||||||||||| ||| || | ||||||
Sbjct 1724 ATAAAAGGGTTTTGACTGTTTTACCCTTTTTGGCA---CAA--CA-T-------AGATGC 1770
Query 1922 CTCACGTTGTAATTTTCCACGTCATGATG 1950
|||| |||||||||||||||||| |||||
Sbjct 1771 CTCATGTTGTAATTTTCCACGTCCTGATG 1799
> Ahg495754 jgi|Araly1|495754|fgenesh2_kg.8__1570__AT5G56630.1
Length=2015
Score = 1423 bits (770), Expect = 0.0
Identities = 1171/1366 (86%), Gaps = 22/1366 (2%)
Strand=Plus/Plus
Query 330 GAG-AGTAGCAAACCGAAGATCATCAATGGCT-CTTGTGGTTATGTTCTAGAAGATGTAC 387
||| |||| ||| ||||||||| |||| || | || |||||||| |||| |||| || |
Sbjct 368 GAGAAGTAACAAGCCGAAGATCGTCAACGG-TCCTGGTGGTTATATTCTTCAAGACGTTC 426
Query 388 CGCATCTC-TCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAAT 446
| |||||| | ||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 427 CTCATCTCAT-TGATTATCTTCCTGATCTTCCTACTTATCCGAATCCATTGCAAGACAAT 485
Query 447 CCAGCTTACTCAGTGGTTAAGCAATACTTTGTTGATGCTGATGACAGTGTTCCTCAAAAG 506
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| | |||
Sbjct 486 CCAGCTTACTCAGTGGTTAAGCAATACTTTGTTGATGCAGATGATAGTGTCCCTGAGAAG 545
Query 507 ATCGTTGTTCACAAGGATGGTCCAAGGGGGATTCATTTTAGACGAGCCGGGCCACGTCAG 566
| ||||||||||||||||||||||| || || ||||| || || || || ||||||||
Sbjct 546 GTTGTTGTTCACAAGGATGGTCCAAGAGGAATCCATTTCAGGCGCGCTGGTCCACGTCAA 605
Query 567 AAGGTATACTTCGAATCTGATGAAGTGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGT 626
||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 606 AAGGTTTACTTTGAGTCTGATGAAGTGCATGCTTGCATAGTTACATGTGGAGGTCTCTGT 665
Query 627 CCTGGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTCT-ATCTTATATGTATGGAGT 685
|| || || |||||||| ||||||||||| |||||||| || ||| || |||||||||||
Sbjct 666 CCCGGTCTCAATACCGTCATTAGAGAAATTGTGAGCAG-CTTATCATACATGTATGGAGT 724
Query 686 GAAGAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTC 745
||||||||| || ||||| ||||||||||| ||||| || || || ||||||||| || |
Sbjct 725 GAAGAGAATCCTTGGAATCGATGGTGGATACAGAGGATTCTACGCCAAGAATACTATCCC 784
Query 746 CTTGGACTCTAAAGTTGTAAATGATATCCATAAGCGTGGAGGGACTATCCTTGGGACCTC 805
||| |||||||||| || ||||||||||||||||| ||||| || || || ||||||||
Sbjct 785 CTTAAACTCTAAAGTCGTGAATGATATCCATAAGCGCGGAGGAACCATTCTCGGGACCTC 844
Query 806 ACGAGGTGGTCACGATACCACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCA 865
| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 845 AAGAGGTGGACACGATACCACGAAGATAGTTGATAGCATTCAAGATCGAGGAATTAATCA 904
Query 866 GGTTTACATTATAGGAGGAGATGGAACACAGCGAGGAGCATCTGTCATATTTGAGGAAAT 925
|||||||||||| |||||||||||||| ||| |||| || || || ||||||||||||||
Sbjct 905 GGTTTACATTATTGGAGGAGATGGAACCCAGAGAGGTGCTTCAGTAATATTTGAGGAAAT 964
Query 926 TAGAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACAATCGATAATGACAT 985
|||||||||||| || |||||||| || ||||||| |||||||| || |||||||| ||
Sbjct 965 TAGAAGACGTGGACTTAAAGTTGCTGTGGTTGGAATTCCGAAAACTATTGATAATGATAT 1024
Query 986 ACCTGTGATAGACAAATCTTTTGGGTTTGACACTGCTGTAGAAGAGGCTCAACGAGCTAT 1045
||||| |||||||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct 1025 TCCTGTAATAGACAAATCTTTTGGGTTTGACACTGCTGTGGAGGAAGCTCAACGAGCAAT 1084
Query 1046 TAATGCAGCACATGTGGAAGCCGAGAGTA-TAGAGAATGGTATCGGAGTTGTCAAGCTTA 1104
||| ||||||||||| ||||| ||||| | | |||||||||||||| ||||||||||||
Sbjct 1085 TAACGCAGCACATGTCGAAGCTGAGAGCAAT-GAGAATGGTATCGGTTTTGTCAAGCTTA 1143
Query 1105 TGGGTCGCTACAGCGGGTTCATAGCGATGTATGCCAC-TCTAGCAAGCAGAGATGTGGAC 1163
||||||| |||||||||||||||||||||||||| || | |||| ||||||||||| |||
Sbjct 1144 TGGGTCGTTACAGCGGGTTCATAGCGATGTATGCTACAT-TAGCCAGCAGAGATGTTGAC 1202
Query 1164 TGCTGTTTGATTCCGGAGTCACCATTTTACCTGGAAGGAGAAGGCGGACTGTTTGAGTAC 1223
|| || |||||||| ||||||||||||||||| ||||||||||| ||||| ||||||| |
Sbjct 1203 TGTTGCTTGATTCCTGAGTCACCATTTTACCTCGAAGGAGAAGGTGGACTCTTTGAGTTC 1262
Query 1224 ATAGAGAAACGACTCAAGGAG-AGCGGTCACATGGTTCTTGTGATTGCAGAAGGTGCAGG 1282
|||||| ||| ||||||||| | ||||||||||| |||| |||| |||||||||||
Sbjct 1263 GTAGAGAGACGGCTCAAGGAGCAT-GGTCACATGGTGATTGTTCTTGCTGAAGGTGCAGG 1321
Query 1283 ACAAGATCTAATGT-CGAAGAGCATGGAATCTATGACACTCAAAGATGCATCTGGTAACA 1341
||| ||| | |||| | || ||||||||||||| | || || ||||| ||||| ||||
Sbjct 1322 ACAGGATTTGATGTGCAAA-AGCATGGAATCTA---CTCTTAAGGATGCTTCTGGGAACA 1377
Query 1342 AACTTCTTAAAGATGTTGGCCTT-TGGCTGTCACAAAGCATCAAGGATCATTTTAATCAG 1400
|||||||||||||||| ||| || ||||| |||||||||||||||| | |||||||| ||
Sbjct 1378 AACTTCTTAAAGATGTCGGC-TTGTGGCTATCACAAAGCATCAAGGTTTATTTTAATAAG 1436
Query 1401 AAGAAGATGGTGATGAACCTCAAGTACATAGATCCAACATACATGATTCGAGCTGTTCCT 1460
|| |||||||||||||| ||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct 1437 AATAAGATGGTGATGAATCTCAAATACATTGATCCTACATACATGATCCGGGCTGTTCCA 1496
Query 1461 AGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAGAGTGCAGTGCACGGTGCA 1520
|| ||||| |||||||||||||| ||||||||||| |||||||| || || || ||||||
Sbjct 1497 AGTAATGCATCAGACAATGTTTACTGTACACTTCTTGCTCAGAGCGCGGTTCATGGTGCA 1556
Query 1521 ATGGCTGGATACACTGGCTATATCAGTGGTCTAGTGAACGGAAGACAAACCTACATACCC 1580
|||||||| ||||||||||| | ||||||||| || || ||||||||||| ||||| |||
Sbjct 1557 ATGGCTGGTTACACTGGCTACACCAGTGGTCTTGTCAATGGAAGACAAACATACAT-CCC 1615
Query 1581 TTT-TACAGGATAACGGAGAAACAGAACCATGTGGTGATCACAGACAGGATGTGGGCAAG 1639
|| ||||||||||| |||| |||||| |||| || || || || || |||||||| ||
Sbjct 1616 TTACTACAGGATAACAGAGACGCAGAACAATGTAGTAATTACGGATAGAATGTGGGCGAG 1675
Query 1640 GCTACTCTCTTCGACAAACCAGCCGAGTTTCTTGGGCCCCAAAGAT 1685
| || | ||||| || |||||||| ||||||||||| || || |||
Sbjct 1676 GTTATTGTCTTCTACGAACCAGCCAAGTTTCTTGGGGCCTAAGGAT 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78465904700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5