BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26280.1
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889524 jgi|Araly1|889524|Al_scaffold_0007_1510 1400 0.0
Ahg484902 jgi|Araly1|484902|fgenesh2_kg.5__894__AT3G45070.1 198 5e-50
> Ahg889524 jgi|Araly1|889524|Al_scaffold_0007_1510
Length=933
Score = 1400 bits (758), Expect = 0.0
Identities = 865/917 (94%), Gaps = 5/917 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGTGGATGAAC-T--TGAGAGACGAAGACTTAACGGAAGAAACAAAGACTCTA 57
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGTGGATGAACTTGATGAGAGACGAAGACTTAACGGAAGAAACAAAGACTCTA 60
Query 58 ATCTCTTCACTTTCTTCAGAGAAAGGGTACCTCGGTCGAAACCTCTGCAAGTACCAAGGC 117
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ATCTCTTCACTTCCTTCAGAGAAAGCCTACCTCGGTCGAAACCTCTGCAAGTACCAAGGT 120
Query 118 TCTTGGTATTACTACAACTTTCTCCAAGGTGTTCTCAATTTCCAGAGAGGTTTTAAGCCT 177
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TCTTGGTATTACTACAACTTTCTCCAAGGCGTTCTCAATTTCCAGAGAGGTTTTAAGCCT 180
Query 178 CAAGACACTGATATTATCGTCGCATCGTACCCAAAATCCGGCACCCTGTGGCTCAAGGCA 237
|||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 CAAGACACCGATGCTATCGTCGCATCGTACCCAAAATGCGGCACCCTGTGGCTCAAGGCA 240
Query 238 CTCACTGTCGCGCTTTTTGAGAGAACAAAGAACCCTTC-TCATGATGATCCTATGAGCCA 296
||||| || ||||| |||||||| ||||||||||||| || ||||||||||| ||||||
Sbjct 241 CTCACAGTTGCGCTCGTTGAGAGATCAAAGAACCCTTCGTC-TGATGATCCTACGAGCCA 299
Query 297 TCCTCTTCTATCCAACAATCCTCACAACCTCCTCTCATCATCATCTCCAAGGTTGTTCTC 356
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 300 TCCTCTTTTATCCAACAATCCTCACAACCTCCTCACATCATCATCTCCAAGGCTGTTCTC 359
Query 357 TACTCACACGCCTTTCCACACGCTGCAAGTAGCTGTCAAGGACTCTCCTTGCAAGGTGGT 416
|||||||||||||||| | ||||| ||||||||| |||| ||||||||||||||||| |
Sbjct 360 TACTCACACGCCTTTCAATACGCTCCAAGTAGCTCTCAAAGACTCTCCTTGCAAGGTACT 419
Query 417 TTACATCTGCAGGGACGCGAAAGATTCGCTGGTGTCACGTTGGCATATCGTTTGCAGGAG 476
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TTACATTTGCAGGGACGCGAAGGATTCTCTGGTGTCACGTTGGCATATCGTTTGCAGGAG 479
Query 477 TCTGAATAAAGAAGAGGACAGAACCATTCTTGAGTCTATGTTTGAGTCCTTTTGCAGCGG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTGAATAAAGAAGAGGACAGAACCATTCTTGAGTCTATGTTTGAGTCCTTTTGCAGCGG 539
Query 537 AGTCTGCTTGTTTGGTCCGTTTTGGGATCATATCCTGAGTTACTGGAAAGCTAGCTTGGA 596
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 540 AGTCTGCTTGTTTGGTCCGTTCTGGGACCATATCCTGAGTTATTGGAAAGCTAGCTTGGA 599
Query 597 AAAGCCAAAGCAAGTGCTTTTCATGAGGTATGATGAGATAAAAACAGATCCTCATGGTCA 656
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 600 AAAGCCAAAGCAAGTGCTTTTCATGAGGTACGATGAAATAAAAACAGATCCTCATGGTCA 659
Query 657 GCTCAAGAAACTCGCAGAGTTTTTGGGTTGTCCATTTTCTAAGGAAGAAGAAAAGAACGG 716
| |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct 660 GATCAAGAAACTTGCAGAGTTCTTGGGTTGTCCATTTTCTAAGGAAGAAGAAAGGAATGG 719
Query 717 ATCTCTAAATAAGATCTTGGAGATGTGTTCTCTGCCTAACCTGAGCAGTTTGGAGGTTAA 776
||| || |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 720 ATCAATAGATAAGATCTTGGAGATGTGTTCTCTGCCTAACCTGAGCAGTTTGGATGTGAA 779
Query 777 CAAGACCGGAAAGTCAATCAATGGCATAGAGTACAAGAACCATTTCCGCAAAGGGATAGT 836
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAAGACAGGAAAATCAATCAATGGCATAGAGTACAAGAACCATTTCCGCAAAGGGATAGT 839
Query 837 TGGTGACTGGAAGAATCATCTAACTCCGGAAATGGGTAGCAAAATCGACATGATCATGAA 896
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 TGGTGATTGGAAGAATCATCTAACTCCGGAAATGGGTAACAAAATCGACATGATCATGAA 899
Query 897 GGAGAAACTCAAAGATT 913
|||||||||||||||||
Sbjct 900 GGAGAAACTCAAAGATT 916
> Ahg484902 jgi|Araly1|484902|fgenesh2_kg.5__894__AT3G45070.1
Length=765
Score = 198 bits (107), Expect = 5e-50
Identities = 230/286 (80%), Gaps = 22/286 (8%)
Strand=Plus/Plus
Query 12 GATGAAC-TTGAGAGACGAAGACTTAACG-GAAGAAACAAAGACTCTAATCTCTTCACTT 69
||||||| || ||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 21 GATGAACGTT-AGAAACGAAGACTTAA-GCGAAGAAACAAAGACTCTAATCTCTTCACTT 78
Query 70 TCTTCAGAGAAAGGGTAC-CTCGGTCGAAACCTCTGCAAGTACCAAGGCTCTTGGTATTA 128
||||||| |||| | | || || |||| | || ||||||||||| | ||||||| |
Sbjct 79 CCTTCAGACAAAGATTCCACTGGGA-GAAATGTTTGTAAGTACCAAGGATGTTGGTAT-A 136
Query 129 CTACA-ACT-TTCTCCAAGGTGTTCTCAATTTCCAGA-GAGGTTTTAAGCCTCAAGACAC 185
|| | | | ||||||||| ||| ||||||||||||| || || ||||||||||||||
Sbjct 137 CTCCCCA-TATTCTCCAAGCTGTCCTCAATTTCCAGAAGAACTTC-AAGCCTCAAGACAC 194
Query 186 TGATATTATCGTCGCATCGTACCCAAAATCCGGCACC-CTGTGGCTCAAGGCACTCAC-T 243
|||||| ||||| || |||| ||| |||| |||||| || ||||||||||| || || |
Sbjct 195 TGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACAACT-TGGCTCAAGGCGCTTACAT 253
Query 244 GTCGC-G-CTTTTTGAGAGAAC-AAAGAACCCTTCTCATGATGATC 286
|||| | | ||| | ||| | ||| | |||||||||||||||||
Sbjct 254 -TCGCAGTCGTTT-GT-AGATCGAAACA-CCCTTCTCATGATGATC 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5