BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26288.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945445 jgi|Araly1|945445|scaffold_701674.1 584 5e-166
Ahg329048 jgi|Araly1|329048|fgenesh1_pm.C_scaffold_7001275 200 2e-50
Ahg904298 jgi|Araly1|904298|Al_scaffold_0003_1426 189 5e-47
Ahg480296 jgi|Araly1|480296|fgenesh2_kg.3__2997__AT1G66530.1 172 5e-42
Ahg349990 jgi|Araly1|349990|fgenesh1_pg.C_scaffold_6000583 161 1e-38
> Ahg945445 jgi|Araly1|945445|scaffold_701674.1
Length=498
Score = 584 bits (316), Expect = 5e-166
Identities = 457/519 (88%), Gaps = 33/519 (6%)
Strand=Plus/Plus
Query 145 TTGACAAAAG-A--AGAAGAGATGAACATTCGCGATGGTAATCTTATTTCGACTACAAAA 201
|||||||||| | |||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct 1 TTGACAAAAGAAGCAGAAGAAATGATCATTCGCGATGGTAATCTGATTTCGACAACAAAA 60
Query 202 GAAGAAGAG-GGTGTTATTGGAGTTTCAGGATCCTCTGCAAAAG-----T-TTCATCTTC 254
||||||| | |||||| | ||||||||| ||||||| | ||||| | |||||||||
Sbjct 61 GAAGAAG-GTGGTGTTGTAGGAGTTTCAAGATCCTCGGAAAAAGATCCATCTTCATCTTC 119
Query 255 ATCTTCTATCTCTATGTGTTCATCTGATTTAACAGAGGATGcttcttcttcttcttcttc 314
||| ||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 120 ATCGTCTATCTCTATTTATTCATCTGATTTAACAGAGGATG---------------CTTC 164
Query 315 ttcttcttcttcttcAAATGGGCCTTTCGACGATCTTTCGGACCTCATCTCTCAGCTCCC 374
||||||||| || ||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct 165 TTCTTCTTC-TC--CAAATGGGCCTTTTGACGACCTATCAGACCTAATCTCTCAGCTCCC 221
Query 375 TATCATTCAGGTCAAGAAAGGAGGACTTTCAAAGTATTATAAAGGCAAATCTCAATCATT 434
| ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 222 TTTCACCCACGTCAAGAAAGGAGGACTTTCAAAGTATTATAAAGGCAAATCTCAGTCATT 281
Query 435 CACATCTCTAGCAAATGTCACAAGTCT-ACAGGATCTTGTGAAGAGAGGATCAAGAACGA 493
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 282 CACATCTCTAGCAAATGTCACAAG-CTTACAGGATCTTGTGAAGAGAGGATCAAGAACGA 340
Query 494 AGTCATGCTGCAAAAGGGATTATTTCTATGGACCAAAGGCAACAATCTCCATGAAAGCCA 553
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 341 AGTCATGCTGCAAAAGGGATTATTTATATGGACCAAAGGCCACAATCTCCATGAAAGCCA 400
Query 554 CGAGAACATCCTCAAAACATTCAAATTCAAGATTAACCTTTAAA-CCATTTCATGATTCA 612
| ||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 401 CAAGAACATCCTCAAGTCATTCCAATTCAAGATTAAC-TTTAAAACCATTTCATGATTCA 459
Query 613 CCCAAATCAGTTCAATGACATGACAAAACAACCTTCTGG 651
|| ||||||||||||||||||||||||||||||||||||
Sbjct 460 CCAAAATCAGTTCAATGACATGACAAAACAACCTTCTGG 498
> Ahg329048 jgi|Araly1|329048|fgenesh1_pm.C_scaffold_7001275
Length=1773
Score = 200 bits (108), Expect = 2e-50
Identities = 112/114 (98%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 813 TCAAATCTTGTAAACCGGAGTGATTCCAAGAAGGTGGAAGCATTTCCGCATGACTATGGC 872
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1773 TCAAATCTTGTAAACAGGAGTGATTCCAAGAAGGTGGAAGCATTTCCGCATAACTATGGC 1714
Query 873 CGTTGCTTCACAAAGTAGGAGACGGCTTGTCTCCTCTGGTGAACCATTGACCTG 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 CGTTGCTTCACAAAGTAGGAGACGGCTTGTCTCCTCTGGTGAACCATTGACCTG 1660
Score = 154 bits (83), Expect = 2e-36
Identities = 102/111 (92%), Gaps = 2/111 (2%)
Strand=Plus/Minus
Query 1035 ACCTGACAATTGGAGTAGAATCTGGTAAAGTGTTCAGATAAATTGTAGAGGTACTCGCAC 1094
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1664 ACCTGACAATTGGAGTAGAATCTGGTGTAGTGTTCAGATAAATTGTAGAGGTACTCGCAC 1605
Query 1095 AGAACACTCGGTAATAAGTTGGTACAAGCTTCCTCCACCGTCT--GCAAAT 1143
|| || |||||||| |||||||| ||||||||||| ||||||| ||||||
Sbjct 1604 AGCACGCTCGGTAACAAGTTGGTGCAAGCTTCCTCAACCGTCTCAGCAAAT 1554
Score = 126 bits (68), Expect = 4e-28
Identities = 70/71 (99%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 1230 CTCAGCAAATCGAAGCAAGTGAAGCCCCAGTGCTCGTTCATCTGCATGATCCAATGCTAA 1289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 CTCAGCAAATCGAAGCAAGTGAAGCCCCAGTGCTCGTTCATCTGCATGATCCAATGCTAG 1504
Query 1290 TTTTCCTGTCT 1300
|||||||||||
Sbjct 1503 TTTTCCTGTCT 1493
> Ahg904298 jgi|Araly1|904298|Al_scaffold_0003_1426
Length=1740
Score = 189 bits (102), Expect = 5e-47
Identities = 110/114 (96%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 813 TCAAATCTTGTAAACCGGAGTGATTCCAAGAAGGTGGAAGCATTTCCGCATGACTATGGC 872
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TCATATCATGTAAACAGGAGTGATTCCAAGAAGGTGGAAGCATTTCCGCATGACTATGGC 1681
Query 873 CGTTGCTTCACAAAGTAGGAGACGGCTTGTCTCCTCTGGTGAACCATTGACCTG 926
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1680 CGTTGCTTCACAAAGTAGGAGACGGCTTGTCTCCTCTGCTGAACCATTGACCTG 1627
> Ahg480296 jgi|Araly1|480296|fgenesh2_kg.3__2997__AT1G66530.1
Length=1790
Score = 172 bits (93), Expect = 5e-42
Identities = 107/114 (94%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 813 TCAAATCTTGTAAACCGGAGTGATTCCAAGAAGGTGGAAGCATTTCCGCATGACTATGGC 872
||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 TCAAAGCTTGTAAACAGGGGTGATTCCAAGAAGGTGGAAGCATTTCCGCATGACTATGGC 1731
Query 873 CGTTGCTTCACAAAGTAGGAGACGGCTTGTCTCCTCTGGTGAACCATTGACCTG 926
||||||||||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1730 TGTTGCTTCACATAGTAGGAGACGGCTTGTCTCCTCTGCTGAACCATTCACCTG 1677
> Ahg349990 jgi|Araly1|349990|fgenesh1_pg.C_scaffold_6000583
Length=1254
Score = 161 bits (87), Expect = 1e-38
Identities = 106/115 (92%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 813 TCAAATCTTGTAAACCGGAGTGATTCCAAGAAGGTGGAAGCATTTCCGCATGACTATGGC 872
||||| ||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1254 TCAAAGCTTATAAACAGGGGTGATTCCAAGTAGGTGGAAGCATTTCCGCATGACTAT-GC 1196
Query 873 C-GTTGCTTCACAAAGTAGGAGACGGCTTGTCTCCTCTGGTGAACCATTGACCTG 926
| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1195 CAGTTGCTTCACAAAGTAGGAGACGGCTTGTCTCCTCTGCTGAACCAATGACCTG 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5