BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G26320.1

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492181 jgi|Araly1|492181|fgenesh2_kg.7__1614__AT4G26320.1         486    4e-137


> Ahg492181 jgi|Araly1|492181|fgenesh2_kg.7__1614__AT4G26320.1
Length=335

 Score =  486 bits (263),  Expect = 4e-137
 Identities = 313/337 (93%), Gaps = 3/337 (1%)
 Strand=Plus/Plus

Query  4    ACTAAACATATAGTCTCTTCGTGCTTTCTCAAGAACCACCTAGAGATAACCCAATGGAGG  63
            |||||||||||| |||||| ||||||||||||||||||| |||||||||  |||||||||
Sbjct  1    ACTAAACATATAATCTCTTTGTGCTTTCTCAAGAACCACTTAGAGATAAATCAATGGAGG  60

Query  64   CAATGAAGATGAGACTCTTTGTGGCGGTTTTGGTGGCAGCGATGGCTTTCTCTGCGGTGC  123
            ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct  61   CAATGAAGATGAGACTCTTTGTGGCGGTTTTGGTGGCGGCGATGGCTTTTTCTGCTGTGC  120

Query  124  AACAGGCTGCCGCGGTGGAGGCTCCAGCTCCGAGTCCTACCTCCGATGCTTCCTTGGCCA  183
            |||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||| |||
Sbjct  121  AACAGGTTGCCGCGGTGGAGGCTCCCGCTCCGAGTCCTACCTCCGACGCTTCTTTGTCCA  180

Query  184  TCCCCGCTTTCTTCGCCTCGGTAGCCACTTTGGCCTTTGGGTTTCTCTTCTAGACAAATT  243
            |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TCCCGGCTTTCTTCGCCTCTGTAGCCACTTTGGCCTTTGGGTTTCTCTTCTAGACAAATT  240

Query  244  TGTTTTTGTCTTTTTAATGTTATAAAAATCATATTCTTG-tttttttATTTCGGTTTTCA  302
            ||||||||||||||| || | ||||||| |||||||||| ||||||| ||| | ||||| 
Sbjct  241  TGTTTTTGTCTTTTTGATCTGATAAAAACCATATTCTTGATTTTTTT-TTT-GTTTTTCT  298

Query  303  TTCTTATGTACTGTTCTAAGATTTTCCACATTTGAAT  339
            |||||||||||||||||||||||||||||||||||||
Sbjct  299  TTCTTATGTACTGTTCTAAGATTTTCCACATTTGAAT  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13239989383


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5