BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26330.1
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889519 jgi|Araly1|889519|Al_scaffold_0007_1505 2891 0.0
> Ahg889519 jgi|Araly1|889519|Al_scaffold_0007_1505
Length=2235
Score = 2891 bits (1565), Expect = 0.0
Identities = 1779/1884 (94%), Gaps = 8/1884 (0%)
Strand=Plus/Plus
Query 360 TTTCAGGGAAACGCCGGAGGCGAAA-CCTATACCTTCGTCATGGAACGGAAAATGCGTCG 418
|||||||||| |||||||||| ||| || ||||||||||| ||||| ||||| |||||||
Sbjct 354 TTTCAGGGAACCGCCGGAGGCAAAATCC-ATACCTTCGTCGTGGAAAGGAAATTGCGTCG 412
Query 419 GAGGGGAAGACTTTGATCCATCTGTACATTGCAATCGTAAATTGATCGGTGCTCGATTTT 478
|||| ||||| || |||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 413 GAGGAGAAGAGTTCAATCCTTCCGTACATTGCAACCGTAAATTGATCGGTGCTCGATTTT 472
Query 479 ACCTCAGAGGATTCGAAGAGACGTACGGAACAATTGACTTTACGCGAGATCCTGAATACC 538
|||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||
Sbjct 473 ACCTCAGAGGATTCGAAGAGACATATGGACCGATTGACTTTACGCGAGATCCTGAATACC 532
Query 539 GATCGCCGCGAGATTACCTCGGTCACGGCACACACACAGCTTCCACCGCCGTCGGATCCG 598
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 533 GATCGCCGCGAGATTACCTCGGTCACGGCACACACACAGCTTCAACCGCCGTTGGATCCG 592
Query 599 TTGTTCGCAATGTCTCCGGCTTCTTCGGTCTT-GGACGCGGCACTGCTCGCGGCGGAGCT 657
|||||||||| ||||||||||||| |||| || ||||||||||||||||| |||||||||
Sbjct 593 TTGTTCGCAACGTCTCCGGCTTCTCCGGT-TTGGGACGCGGCACTGCTCGTGGCGGAGCT 651
Query 658 CCATTGGCTAGGCTAGCTGTGTTCAAGACGTGTTGGGGGAAGGATCTGGAAGGTGTTTGC 717
|| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CCGTCGGCGAGGCTAGCAGTGTTCAAGACGTGTTGGGGGAAGGATCTGGAAGGTGTTTGC 711
Query 718 ACGGAGGCTGATATCTTAGCAGCTTTTGACGACGCCATCCACGACGGCGTCCACGTGATT 777
||||||||||||||||| |||||||| |||||||| |||||| |||| ||| ||||||||
Sbjct 712 ACGGAGGCTGATATCTTGGCAGCTTTCGACGACGCGATCCACAACGGTGTCAACGTGATT 771
Query 778 TCGGCCTCTTTTGGCTATTCGCCGCCGTTATCTCCGTTTTTCGAGTCGAGCGCAGACATC 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TCGGCCTCTTTTGGCTATTCGCCGCCGTTATCTCCGTTTTTCGAGTCGAGCGCAGACATT 831
Query 838 GGGGCTTTTCACGCAG-CGGAGAGAGGAATCAGCGTGGTGTTCTCTACCGGAAACGATGG 896
|||||||||||||| | ||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 832 GGGGCTTTTCACGC-GTCGGAGAGAGGAATTAGCGTGGTTTTCTCTGGCGGAAACGATGG 890
Query 897 CCCTGATCCTGGTGTTGTTCAGAATGTCGCTCCTTGGGCGGTTTCTGTCGCAGCTTCGAC 956
|||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 891 GCCTGATCCCGGCGTTGTTCAGAATGTCGCTCCTTGGGCAGTTTCCGTCGCAGCTTCGAC 950
Query 957 AGTTGATCGGAGTTTTCCCACCAGAATTGTTATCGACGGTAGTTTCACTCTCACGGGTCA 1016
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 951 AGTTGATCGGAGTTTTCCCACCAGAATTGTTATCGACGGCAGTTTCACTCTTACGGGTCA 1010
Query 1017 GAGCTTGATTTCTCAGGAGATCACTGGTACATTAGCTCTTGCAACAACGTATTTCAATGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GAGCTTGATTTCTCAGGAGATCACTGGTACATTAGCTCTTGCAACAACGTATTTCAATGG 1070
Query 1077 AGGGGTTTGCAAATGGGAAAACTGGATGAAGAAATTGGCCAATGAGACAATAATTCTGTG 1136
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1071 AGGGGTTTGCAAATGGGAAAACTGGTTGAAGAAATTGGCCAATGGGACAATAATTCTGTG 1130
Query 1137 CTTTTCTACTTTGGGTCCGGTTCAGTTCATTGAAGAAGCACAAGCTGCTGCTATTAGAGC 1196
||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1131 CTTCTCTACTTTGGGTCCGGTTCAGTTCATTGAAGAGGCACAAGCTGCTGCCATAAGAGC 1190
Query 1197 GAACGCATTAGCGCTAATATTTGCAGCCTCACCAACCAGACAGCTCGCTGAAGAAGTAGA 1256
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1191 GAACGCATTAGCGCTAATATTTGCAGCCTCACCAACCAAACAGCTCGCTGAAGAAGTAGA 1250
Query 1257 CATGATCCCAACAGTTCGTGTTGATATTCTTCATGGGACTAGGATTAGGAACTATCTTGC 1316
||||||||||||||||||||| ||||||||||| ||||| | ||| ||||||||||||||
Sbjct 1251 CATGATCCCAACAGTTCGTGTGGATATTCTTCACGGGACAATGATCAGGAACTATCTTGC 1310
Query 1317 TCGTTCGCCTACAGTGCCAATGGTGAAAATTGGACCGAGCAAAACGGTTATCGGAGAGAC 1376
||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1311 TCGTTTGCCTACAGTGCCAATTTTGAAAATTGGACCGAGCAAAACGGTTATTGGAGAGAC 1370
Query 1377 TACAGCACCCTCCGTTGCATATTTCTCTTCAAGAGGACCTAGCTCACTATCACCTGATAT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TACAGCACCCTCCGTTGCATATTTCTCTTCAAGAGGACCTAGCTCACTATCACCTGATAT 1430
Query 1437 TCTCAAGCCAGATATTACAGCTCCTGGCATTGGGATATTAGCAGCATGGCCTCCTAGAAC 1496
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1431 TCTCAAGCCAGATATTACAGCGCCTGGCATTGGGATATTAGCAGCATGGCCTCATAAAAC 1490
Query 1497 TCCACCTACTCTGTTACCAGGAGACCACCGATCTATTGAGTGGAATTTCCAGTCGGGAAC 1556
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TCCACCTACACTGTTACCAGGAGACCACCGATCTATTGAGTGGAATTTCCAGTCGGGAAC 1550
Query 1557 TTCAATGTCATGTCCCCATGTGGCTGGAGTTATGGCGCTTCTCCAGTCAGCTCACCCTGA 1616
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1551 GTCAATGTCATGTCCTCATGTGGCTGGAGTTATGGCGCTTCTCCAGTCAGCTCATCCTGA 1610
Query 1617 CTGGTCACCTTCTGCTATCAGAAGCGCTATCATGACCACAGCGTATACAAGAGACACAAG 1676
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 CTGGTCACCTTCTGCAATCAGAAGCGCTATCATGACCACAGCGTATACAAGAGACACAAC 1670
Query 1677 CTATGACTTGATCCTCTCTGGTGGTTCGATGAAGTCCACTGACCCGTTTGATATTGGTGC 1736
|||||| |||||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1671 CTATGATTTGATCCTGTCTGGTGGGTCGATGAAGTCCACTGACCCCTTTGATATGGGTGC 1730
Query 1737 CGGGCATATAAACCCTTTGAAAGCCATGGACCCAGGTCTGGTTTACAATACCAGAACCGA 1796
|||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1731 TGGGCATTTAAACCCTTTGAAAGCCATGGACCCTGGTCTGGTTTACAATACCAAAACCGA 1790
Query 1797 CGACTATGTGCTCTTCATGTGCAACATTGGCTACACGGACCAAGAAATTAAGTCCATGGT 1856
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1791 AGAGTATGTGCTCTTCATGTGCAACATTGGCTACACGGACCAACAAATTAAGTCCATGGT 1850
Query 1857 TCTCCACCCAGAGCCTTCGACAACATGTCTTCCGTCTCACTCGTACCGAACAAATGCAGA 1916
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1851 TCTCCACCCAGAGCCTTCCACAACATGTCTTCCGTCTCACTCGTATCGAACAAATGCAGA 1910
Query 1917 TTTCAACTATCCGTCTATTACCATACCGAGCTTGAGATTAACCAGGACAATAAAACGTAC 1976
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1911 TTTCAACTATCCGTCTATTACCATACCGAGCTTGAGATTGACCAGGACAATAAAACGTAC 1970
Query 1977 TGTAAGCAACGTCGGTCCAAACAAAAACACAGTTTATTTCGTGGACATCATTAGACCCGT 2036
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1971 TGTAATCAACGTTGGTCCAAACAAAAACACAGTTTATTTCGTGGACATCATTAGACCCAT 2030
Query 2037 GGGAGTGGAAGTTTTGATCTGGCCGCGGATTCTGGTGTTCTCGAAGTGCCAACAAGAACA 2096
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2031 GGGAGTGGAAGTTGTGATCTGGCCGCGGATTCTAGTGTTCTCGAAGTGCCAACAAGAACA 2090
Query 2097 CTCATATTATGTTACATTCAAGCCCACTGAGATTTTCTCTGGTCGGTATGTATTTGGGGA 2156
| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2091 CACATATTATGTAACATTCAAGCCCACTGAGATTTACTCTGGTCGGTATGTATTTGGGGA 2150
Query 2157 AATCATGTGGACAAATGGGTTACATCGAGTTAGAAGTCCGGTGGTTGTGTTCTTGAGCAA 2216
|||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 2151 GATCATGTGGACAGATGGGTTACATCGAGTTAGAAGTCCGTTGGTTGTCTTCTTGAGCAA 2210
Query 2217 CGCT-GGTTTTCTTGCAAGCAGTT 2239
|||| || |||| ||||||||||
Sbjct 2211 CGCTAGGCCTTCT-GCAAGCAGTT 2233
Score = 459 bits (248), Expect = 5e-128
Identities = 281/297 (95%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 4 ATCTCGTCCATGAATTTTTGGAGATGTCGTTGTAGCAAAGACGATGCGG-AACAATCCAT 62
||||||||| ||| ||||||||||| ||||||||||||| |||| || ||||||| ||
Sbjct 34 ATCTCGTCCGCAAATATTTGGAGATGTTGTTGTAGCAAAGAAGATG-GGAAACAATCGAT 92
Query 63 GTTGTACAGTTACAACAATGGCTTCTTAGGCTTCTCAGCAAAACTCAACTCAACACAAGC 122
|||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||
Sbjct 93 GTTGTACAGTTACAACAATGGCTTCTCAGGCTTCTCTGCAAAACTCAACGCATCACAAGC 152
Query 123 TGCTTCTTTAGCAAAATTGAACCAGGTCATAACGGTTTTCAAGAGCAAAAGCTTGAAGTT 182
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TACTTCTTTAGCAAAATTGGACCAGGTCATAACGGTTTTCAAGAGCAAAAGCTTGAAGTT 212
Query 183 GCACACAACAAGGAGCTGGGATTTCTTAGGTCTCGCCGTTGACAATGCCCGTCGTACTCC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GCACACAACAAGGAGCTGGGATTTCTTAGGTCTCGCCGTTGACAATGCCCGTCGTACTCC 272
Query 243 TCCGCCGCAGCTCGCCTATGGATCCGACATTGTCGTCGGAATCTTCGATACTGGTCT 299
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 273 TCCGCCGCAGCTCGCCTATGGATCCGACATTGTCGTCGGAATATTCGATACTGGTCT 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84369892675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5