BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26370.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492177 jgi|Araly1|492177|fgenesh2_kg.7__1610__AT4G26370.1 2128 0.0
> Ahg492177 jgi|Araly1|492177|fgenesh2_kg.7__1610__AT4G26370.1
Length=1345
Score = 2128 bits (1152), Expect = 0.0
Identities = 1289/1354 (95%), Gaps = 13/1354 (1%)
Strand=Plus/Plus
Query 1 tttttttCAATTTTACGGATATCGTTATCTGCTTCTCACACTAACACGGCGAAGCAGAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1 TTTTTTTCAATTTTACGGATATCGTTATCTGCTTCTCACACTAACACGACGAAGCAGAGA 60
Query 61 AAGAGCTCGAAACAAAAATGGAGGGAACCTTCTCGCCGCTTTGCTTACGTTCTTCTTCGA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAGAGCTCGAAACAAAAATGGAGGGAACCATCTCGCCGCTTTGCTTACGTTCTTCTTCGA 120
Query 121 ACCTCTGTTACTTCTCCAGTAATGTTTCACCAGATTCTCACCGTTCTATAGGATTTACAT 180
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 121 GTCTCTGTTACTTCTCCAGTAATATCTCACCAGATTCTCACCGTTCTATAGGATTTACAT 180
Query 181 TGGTTGATTCGCTCCGGCCAACGAACTTGGTTTCCCTGCGAACGGGAAATAAACGTTCGT 240
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 181 TGGTTGATTCACTCCGGCCAACGAACTTGGTTTCCCTCCGAACGGGAAATAAACGGTCGT 240
Query 241 CATCGTCTTCACTACGGCTATTTCTCTCTCCGACTAGAAGCGCTCTCCGTACGCCGACTA 300
| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CGTCGTC-T--CTACGGCTATTTCTCTCTCCGACGAGAAGCGCTCTCCGTACGCCGACTA 297
Query 301 TTTCCGCGGAGGAGGTGAAAGATGTCCCGATGCCGAAGATTGATAAGAGCGGCCGATTAA 360
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 298 TTTCCGCGGATGAGGTGAAAGATGTTCCGATGCCCAAGATTGATAAGAGCGGCCGATTAA 357
Query 361 GCAGTCCTCGAGCCGCACGCGAGCTCGCTCTTGTAATACTTTATGCCGCATGCTTAGAAG 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 GCAGTCCTCGAGCCGCACGCGAGCTCGCTCTTGTAATACTCTATGCCGCATGCTTAGAAG 417
Query 421 GCTCTGACCCAATTCGTCTCTTTGAGAAGAGAATAAACGCAAGAAGAGAGCCTGGATACG 480
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 GCTCCGACCCAATTCGTCTCTTTGAGAAGAGAATAAATGCAAGAAGAGAGCCTGGATACG 477
Query 481 AGTTTGACAAGAGTTCTTTGTTGGAATACAACCACATGAGCTTTGGAGGACCCCCAGTTA 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGTTTGACAAGACTTCTTTGTTGGAATACAACCACATGAGCTTTGGAGGACCCCCAGTTA 537
Query 541 AAACAGAAACAAAAGAAGAAGAAGATGAGCTTGTGCGCCATGATGAAAAAGAATCGAAAA 600
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAACTGAAACAAAAGAAGAGGAAGATGAGCTTGTGCGCCATGATGAAAAAGAATCGAAAA 597
Query 601 TCGAAGCCGAAGTGCTTTCAGCTCCCCCAAAGCTGGTGTACAGCAAACTTGTTTTACGGT 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 TCGAAGCCGAAGTGCTTTCAGCTCCCCCAAAGCTGGTGTATAGCAAACTTGTTTTACGGT 657
Query 661 TTGCAAAGAAACTCTTGGCTGCGGTAGTTGATAAATGGGATAGTCATGTCGTTATCATCG 720
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 658 TTGCAAAGAAACTCTTGGCTGCAGTAGTTGATAAATGGGATAGCCATGTCGTTATCATCG 717
Query 721 AGAAAATTTCCCCGCCAGATTGGAAGAGTGCACCAGCTGGAAGAATATTGGAGTTTTCGA 780
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 718 AGAAAATTTCCCCACCAGATTGGAAGAGTGCACCAGCTGGAAGAATATTGGAGTTTTCAA 777
Query 781 TTCTTCACTTGGCAATGTCTGAAGTGGCAGTCCTTGAAACCCGACACCCGATTGTCATTA 840
|||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 778 TTCTTCACTTAGCAATGTCTGAAGTGGCAGTACTTGAAACCCGACACCCAATAGTCATCA 837
Query 841 ACGAGGCTGTTGATCTTGCAAAACGGTTCTGCGATGGATCAGCACCACGCATAATCAACG 900
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 838 ACGAGGCTGTTGATCTTGCAAAACGGTTCTGCGATGGATCAGCGCCACGCATAATCAACG 897
Query 901 GATGCCTAAGGACATTTGTCAAGGATAGAGCAACAACATCAACACCTCAAGCTTTAGAAT 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 GATGCCTAAGGACATTTGTCAAGGATAGAGCAGCAACATCAACACCTCAAGCTTTAGAAT 957
Query 961 TGAAGCAAGAAGTGTCGGTTTAAATTAGAACAAAACCCGCATCTTCGTTAGGAGGCAGGC 1020
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGAAGCAAGAAGTGTCAGTTTAAATTAGAACAAAACCCGCATCTTCGTTAGGAGGCAGGC 1017
Query 1021 AA-CCTCAAGA-TGTTGGTCGTCGGAAGTCGCTAGTAGGCAAAGTGTTGATCCGATGATC 1078
|| ||||| || | |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1018 AAACCTCAGGAAT-TTGGTCGTCGGAAGTCACTAGTAGGCAAAGTGTTGATCCGACGATC 1076
Query 1079 TTATATATTCGACAAAGTCGCTCTCTGTCTTGACAGACCGCTTCTGGTCCGAAGCTTTTG 1138
||||| || ||| |||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 1077 TTATACATA-GACGGAGTCGCTCTCTGTCTTCACAGGCCGCTTCTGGTCC-AAGCTTTTG 1134
Query 1139 ATACCTGAGACTGAATCTATCCATTGCAGGTCAACATGATTATTGCTAAGAACACAGCAT 1198
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct 1135 ATACCTGAGACTGAATCTATCTATTGCAGGTCAACATGATTATTGATAAGAACACAACAT 1194
Query 1199 ACTCATGTCTGTATTAATATATTGCCCATAAGATAGTA-T-TAATTTATGTAGTAGTTTT 1256
| ||||||||||||||||||| ||||| |||||||||| | ||||||||||||| |||||
Sbjct 1195 AGTCATGTCTGTATTAATATAATGCCCCTAAGATAGTAGTATAATTTATGTAGTGGTTTT 1254
Query 1257 CATGTTTCTGTCTTTGTATCCTCCTCCTTCACTTGTGTCCCATATTTGAGAACAAACAAA 1316
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1255 CATGTTTCTGTCTTTGTATCCTCCTCC---ACTTGTGTCCCATATTTGAGAACAAAAAAA 1311
Query 1317 GCTGTATAATCAGGTTTTTCGTATAGATGttttt 1350
|||||| |||||||||||||||||||||||||||
Sbjct 1312 GCTGTAAAATCAGGTTTTTCGTATAGATGTTTTT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5