BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26390.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329043 jgi|Araly1|329043|fgenesh1_pm.C_scaffold_7001270 2272 0.0
Ahg495726 jgi|Araly1|495726|fgenesh2_kg.8__1542__AT5G56350.1 1325 0.0
> Ahg329043 jgi|Araly1|329043|fgenesh1_pm.C_scaffold_7001270
Length=1494
Score = 2272 bits (1230), Expect = 0.0
Identities = 1407/1495 (94%), Gaps = 2/1495 (0%)
Strand=Plus/Plus
Query 1 ATGGCTATGGAACAGAGGCCTAAGACGAAGATCGTGTGCACACTCGGGCCGGCGTCCAGA 60
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1 ATGGCTATGGAACAGAGGCCAAAGACGAAGATCGTGTGCACACTCGGGCCAGCTTCCAGA 60
Query 61 TCTGTCCCAATGGTCGAGAAGCTTCTTATGGCGGGGATGAGCGTGGCTCGCTTCAACTTT 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTCTCAATGGTCGAGAAGCTTCTTATGGCGGGGATGAGCGTGGCTCGCTTCAACTTT 120
Query 121 TCTCATGGATCTTACGAATATCACCAGGAGACTCTCGACAATCTTCGTCAGGCCATGCTT 180
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 TCTCATGGATCTTACGAATATCATCAGGAGACTCTCGACAATCTTCGTCAAGCCATGCTT 180
Query 181 AACACTGGCATGCTATGTGCTGTCATGCTCGACACCAAGGGACCAGAGATTCGAACCGGG 240
|| ||||| || || ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 AATACTGGGATTCTCTGTGCTGTCATGCTCGATACCAAGGGACCAGAGATTCGAACTGGG 240
Query 241 TTCTTAAAGGATGGGAAACCTATCCAGCTCAAACAAGGCCAAGAAATCACCATTTCAACT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTTGAAGGATGGGAAACCTATCCAGCTCAAACAAGGCCAAGAAATCACCATTTCAACT 300
Query 301 GACTATGACTTGAAGGGTGATGAGAAAACTATTTGCATGAGCTACAAGAAGTTGGCGCAA 360
||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 GACTATGACATGAAGGGTGATGAGAAAACGATTTGCATGAGCTACAAGAAGTTAGCGCAA 360
Query 361 GATGTGAATCCAGGCATGGTCATACTCTGTGCCGATGGTACCATCTCGTTAAAGGTCCTT 420
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 361 GATGTGAACCCAGGAATGGTCATACTCTGTGCCGATGGTACCATCTCGTTACTGGTTCTC 420
Query 421 TCTTGTGACAAAGAAAAGGGCACTGTCCGTTGTCGTTGTGAGAACACTTCAATGCTTGGT 480
|||||||||||||||||||| || || |||||||||||||| |||||||||||||| |||
Sbjct 421 TCTTGTGACAAAGAAAAGGGTACCGTTCGTTGTCGTTGTGAAAACACTTCAATGCTCGGT 480
Query 481 GAAAGAAAGAACGTTAATCTCCCTGGTGTTGTGGTTGATCTCCCAACTCTAACTGAAAAA 540
|| ||||| ||||| |||||||||||||| || || |||||||||||||||||||| |||
Sbjct 481 GAGAGAAAAAACGTCAATCTCCCTGGTGTCGTTGTGGATCTCCCAACTCTAACTGAGAAA 540
Query 541 GACAAGCAAGACATTCTTGAATGGGGAGTTCCCAATCAAATCGACATGATTGCTCTGTCT 600
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 541 GACAAGCAAGACATTCTTGAATGGGGAGTTCCAAATCAAATCGATATGATTGCTCTGTCT 600
Query 601 TTTGTCAGAAAAGGTTCGGACTTGGTACAAGTTAGGAAGCTACTTGGAAAACATGCTAAA 660
||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 601 TTTGTCAGAAAAGGTTCAGACTTGGTACAAGTTAGGCAGCTACTCGGAAAACATGCAAAA 660
Query 661 ACCATACTTCTCATGTCAAAGGTTGAAAACCAAGAAGGTGTAGCGAATTTTGATGATATC 720
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 ACCATTCTTCTCATGTCAAAGGTTGAGAACCAAGAAGGTGTAGCGAATTTTGATGATATT 720
Query 721 TTGATAAACTCGGATGCGTTTATGATCGCAAGAGGTGACCTTGGAATGGAGATTCCAATT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 721 TTGATAAACTCGGATGCGTTTATGATCGCTAGAGGTGACCTTGGAATGGAGATCCCAATT 780
Query 781 GAGAAGATATTCTTAGCTCAGAAAGTGATGATCTACAAGTGCAATTTCATGGGGAAGCCA 840
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 781 GAGAAGATCTTCTTAGCTCAGAAGGTGATGATCTACAAATGCAATTTCATGGGGAAGCCA 840
Query 841 GTGGTTACAGCGACTCAGATGCTTGAGTCTATGATCAAATCCCCACGACCAACAAGAGCA 900
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGGTCACAGCGACTCAGATGCTCGAGTCTATGATCAAATCCCCACGACCAACAAGAGCA 900
Query 901 GAAGCTACTGATGTTGCAAATGCTGTCCTCGATGGCACAGACTGTGTCATGCTTAGTGGT 960
||||| |||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 901 GAAGCCACTGATGTTGCAAACGCTGTACTCGATGGCACGGACTGTGTCATGCTCAGTGGT 960
Query 961 GAAACCGCAGCTGGAGCATACCCAGAGCTTGCTGTTCGTACAATGGCCAAGATATGTGTG 1020
||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 961 GAAACCGCAGCAGGAGCATATCCAGAGCTTGCTGTCCGTACAATGGCCAAGATTTGTGTG 1020
Query 1021 GAAGCAGAGAGCACACTTG-ACTATGGAGACATCTTCAAGAGGATAATGCTTCACGCTGC 1079
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAAGCAGAGAGCACA-TTGGACTATGGAGACATCTTCAAGAGGATAATGCTTCACGCTGC 1079
Query 1080 GGTCCCTATGAGCCCGATGGAGTCACTTGCTTCATCTGCGGTCAGAACCGCTACTTCCTC 1139
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 GGTCCCTATGAGCCCGATCGAGTCACTTGCTTCCTCTGCGGTCAGAACCGCTACTTCCTC 1139
Query 1140 AAGAGCCACTCTTATGATGGTCTTGACCAGAGGAGGCAGCACGGCGAGGCTGGTGGCTAA 1199
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 AAGAGCCACTCTCATGATGGTCTTGACCAGAGGAGGCAGCACGGCGAGACTGGTGGCTAA 1199
Query 1200 GTATAGACCAGGGATACCCATTTTGTCCGTGGTGGTTCCTGAAATCACGTCTGACTCTTT 1259
|||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 1200 GTATAGACCAGGGATACCCATTCTGTCGGTGGTGGTTCCTGAAATCACGTCCGACTCTTT 1259
Query 1260 TGATTGGGCGTGTAGCAACGAGGCACCGGCAAGACACAGTCTCATCTACCGTGGTTTAGT 1319
||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1260 TGATTGGTCGTGTAGTAACGAGGCACCAGCAAGACACAGTCTCATCTTCCGGGGTTTAGT 1319
Query 1320 CCCGGTGCTGTATGCTGGATCGGCTAGAGCCTCGATCGACGAGTCAACAGAAGAAACTCT 1379
||| || ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1320 CCCAGTTCTGTACGCTGGTTCGGCTAGAGCCTCGATAGACGAGTCAACTGAAGAAACGAT 1379
Query 1380 CGAGTTCGCGTCAGAGTATGGTAAAAAGAAGCAACTCTGCAAGACCGGAGACTCTGTTGT 1439
|||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 1380 CGAGTTCGCGACAGAGTACGGGAAAAAGAAGCAACTGTGCAAGACCGGAGACTCTGTTGT 1439
Query 1440 GGCTCTCTTCCGTACAGGTAACGCTATTGTTATCAAGATCTTGACCGTCAAGTGA 1494
|||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1440 GGCTCTCTTCCGAACAGGTAACGCCATTGTTATCAAGATCTTGACAGTCAAGTGA 1494
> Ahg495726 jgi|Araly1|495726|fgenesh2_kg.8__1542__AT5G56350.1
Length=1942
Score = 1325 bits (717), Expect = 0.0
Identities = 1245/1499 (83%), Gaps = 40/1499 (3%)
Strand=Plus/Plus
Query 16 AGGCCTAAGACGAAGATCGTGTGCACACTCGGGCCGGCGTCCAGATCTGTCCCAATGGTC 75
||||| |||||||||||||| || || || || || || ||||||||||| || |||||
Sbjct 236 AGGCCGAAGACGAAGATCGTTTGTACTCTAGGTCCAGCTTCCAGATCTGTTCCGATGGTT 295
Query 76 GAGAAGCTTCTTATGGCGGGGATGAGCGTGGCTCGCTTCAACTTT-TCTCATGGATCTTA 134
||||||||||||| ||| || |||| ||| |||||||| || ||| |||||||||||| |
Sbjct 296 GAGAAGCTTCTTAGGGCTGGTATGAACGTTGCTCGCTTTAA-TTTCTCTCATGGATCTCA 354
Query 135 CGAATATCACCAGGAGACTCTCGACAATCTTCGTCAGGCCATGCTTAACACTGGCATGCT 194
||||| || || |||||||| || ||||| | ||| || |||||||| ||||| || ||
Sbjct 355 TGAATACCATCAAGAGACTCTTGATAATCTCCATCAAGCTATGCTTAATACTGGGATTCT 414
Query 195 ATGTGCTGTCATGCTCGACACCAAGGGACCAGAGATTCGAACCGGGTTCTT-AAAGGATG 253
||||||||||||||||| |||||||| ||||| || |||||||||||||| ||| ||||
Sbjct 415 CTGTGCTGTCATGCTCGATACCAAGGGTCCAGAAATCCGAACCGGGTTCTTGAAA-GATG 473
Query 254 GGAAACCTATCCAGCTCAAACAAGGCCAAGAAATCACCATTTCAACTGACTATGACTTGA 313
||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 474 GGAAACCAATCCAGCTGAAACAAGGCCAAGAGATCACCATTTCGACTGACTATGACTTGA 533
Query 314 AGGGTGATGAGAAAACTATTTGCATGAGCTACAAGAAGTTGGC-GCAAGATGTGAATCCA 372
||||||| ||||| || ||||||||||||||||| |||||||| | ||||||||| |||
Sbjct 534 AGGGTGACGAGAACACGATTTGCATGAGCTACAAAAAGTTGGCTG-TAGATGTGAACCCA 592
Query 373 GGCATGGTCATACTCTGTGCCGATGGTACCATCTCGTTAAAGGTCCTTTCTTGTGACAAA 432
|| ||||||||||| || || |||||||||||||||||| ||| || ||||||||||||
Sbjct 593 GGAATGGTCATACTTTGCGCTGATGGTACCATCTCGTTACTGGTTCTCTCTTGTGACAAA 652
Query 433 GAAAAGGGCACTGTCCGTTGTCGTTGTGAGAACACTTCAATGCTTGGTGAAAGAAAGAAC 492
|| || || ||||||||||| || |||||||||| | ||||||| || || || ||||||
Sbjct 653 GAGAACGGTACTGTCCGTTGCCGGTGTGAGAACAGTGCAATGCTCGGAGAGAGGAAGAAC 712
Query 493 GTTAATCTCCCTGGTGTTGTGGTTGATCTCCCAACTCTAACTGAAAAAGAC-AAGCAAGA 551
|| ||||| || ||||| || || |||||||||||||||||||| |||||| ||| ||||
Sbjct 713 GTCAATCTTCCAGGTGTCGTTGTGGATCTCCCAACTCTAACTGAGAAAGACAAAG-AAGA 771
Query 552 CATTCTTG-AATGGGGAGTTCCC-AATCAAATCGACATGATTGCTCTGTCTTTTGTCAGA 609
|| || || ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 772 CA-TCATGCAATGGGGAG-TCCCGAATCAAATCGACATGATTGCTCTGTCTTTTGTCAGA 829
Query 610 AAAGGTTCGGACTTGGTACAAGTTAGGAAGCTACTTGGAAAACATGCTAAAACCATACTT 669
|||||||| |||||||| || || |||| || || ||||| || || |||| ||| |||
Sbjct 830 AAAGGTTCAGACTTGGTCCAGGTCCGGAAACTTCTAGGAAAGCACGCCAAAAACATTCTT 889
Query 670 CTCATGTCAAAGGTTGAAAACCAAGAAGGTGTAGCGAATTTTGATGATATCTTGATAAAC 729
|||||||| ||||| || |||||||||||||| || ||||||||||| || ||| | ||
Sbjct 890 CTCATGTCTAAGGTCGAGAACCAAGAAGGTGTGGCAAATTTTGATGACATTTTGGTCAAT 949
Query 730 TCGGATGCGTTT-ATGATCGCAAGAGGTGACCTTGGAATGGAGATTCCAATTGAGAAGAT 788
||||| || ||| ||||| || ||||| || || || ||||| || ||||||||||||||
Sbjct 950 TCGGACGC-TTTCATGATTGCCAGAGGAGATCTGGGCATGGAAATCCCAATTGAGAAGAT 1008
Query 789 ATTCTTAGCTCAGAAAGTGATGATCTACAAGTGCAATTTC-ATGGGGAAGCCAGTGGTTA 847
|||||||||||||| |||||||||||||| ||||| || | ||| || || ||||| |
Sbjct 1009 CTTCTTAGCTCAGAAGGTGATGATCTACAAATGCAACATCCA-GGGAAAACCTGTGGTCA 1067
Query 848 CAGCGACTCAGATGCTTGAGTCTATGATCAAATCCCCACGACCAACAAGAGCAGAAGCTA 907
|||||||||||||||| ||||| |||||||| || || ||||| |||||||| ||||| |
Sbjct 1068 CAGCGACTCAGATGCTCGAGTCCATGATCAAGTCTCCTCGACCCACAAGAGCTGAAGCCA 1127
Query 908 CTGATGTTGCAAATGCTGTCCTCGATGGCACAGACTGTGTCATGCTTAGTGGTGAAACCG 967
| ||||||||||| || |||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1128 CAGATGTTGCAAACGCGGTCCTCGACGGTACAGACTGTGTCATGCTCAGTGGTGAAACCG 1187
Query 968 CAGCTGGAGCATACCCAGAGCTTGCTGTTCGTACAATGGCCAAGATATGTGTGGAAGCAG 1027
|||||||||||||||| || || ||||| ||||||||||| ||||| ||||||||||| |
Sbjct 1188 CAGCTGGAGCATACCCTGAACTAGCTGTCCGTACAATGGCTAAGATCTGTGTGGAAGCCG 1247
Query 1028 AGAGCACACTTGACTATGGAGACATCTTCAAGAGGATAATGCT-TCACGCTGCGGTCCCT 1086
||||||| |||||||| |||||| ||||||||||||| ||||| | || || | || ||
Sbjct 1248 AGAGCACCCTTGACTACGGAGACGTCTTCAAGAGGATCATGCTGT-ACTCTCCAGTTCCA 1306
Query 1087 ATGAGCCCGA-TGGAGTCACTTGCTTCATCTGCGGTCAGAACCGCTA-CTTCCTCAAGAG 1144
|||||||| | | |||||||| || || || || ||||||||||||| || | | ||||
Sbjct 1307 ATGAGCCC-ACTTGAGTCACTCGCATCCTCAGCAGTCAGAACCGCTAACT-CAGCTAGAG 1364
Query 1145 CCACTCTTATGATGGTCTTGACCAGAGGAGGCAGCACGGCGAGGCTGGTGGCTAAGTATA 1204
|||| || || |||||| | ||||||||||| ||||| || || || || |||||||| |
Sbjct 1365 CCACCCTCATCATGGTCCTAACCAGAGGAGGGAGCACAGCAAGACTTGTTGCTAAGTACA 1424
Query 1205 GACCAGGGATACCCATTTTGTCCGTGGTGGTTCCTGAAATCACGTCTGACT-CTTTTGAT 1263
||||||| || || ||| | ||||| || ||||| || |||| | |||| ||| ||
Sbjct 1425 GACCAGGAATGCCTATTCTATCCGTCGTTGTTCCCGAGATCAAAACCGACTTCTTC-GAC 1483
Query 1264 TGGGCGTGTAGCAACGAGGCACCGGCAAGACACAGTCTCATCTACCGTGGTTT-AGTCCC 1322
||| | || ||| | ||| | || || |||||||| ||||||| ||||||| | | ||||
Sbjct 1484 TGGTCTTGCAGCGATGAGTCCCCAGCTAGACACAGCCTCATCTTCCGTGGTCTGA-TCCC 1542
Query 1323 GGTGCTGTATGCTGGATCGGCTAGAGCCTCG-ATCGACGAGTCAACAGAAGAAACTCTCG 1381
||||| || |||||||| |||||||||||| | ||| || |||||||||||| || | |
Sbjct 1543 AGTGCTCTACGCTGGATCCGCTAGAGCCTCGCA-CGATGAATCAACAGAAGAAGCTATTG 1601
Query 1382 AGTTCGCGT-CAGAGTATGGTAAAAAGAA-GCAACTCTGCAAGACCGGAGACTCTGTTGT 1439
|||| || | | |||| || ||| |||| | | || |||||||| ||||||||||||||
Sbjct 1602 AGTTTGC-TACTCAGTACGGGAAAGAGAAAG-AGCTGTGCAAGACTGGAGACTCTGTTGT 1659
Query 1440 GGCTCT-CTTCCG--TACAGGTAACGCTATT-GTTATCAAGATCTTGACCGTCAAGTGA 1494
||||| || ||| | | ||||| ||| | || ||||||||||||||||||||||||
Sbjct 1660 TGCTCTACT-CCGAGT-C-GGTAATGCT-TCAGTGATCAAGATCTTGACCGTCAAGTGA 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5